Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 294 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 845 |
| Acc36I | ACCTGC | 1 cut(s) | 294 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 306 |
| AccBSI | CCGCTC | 1 cut(s) | 185 |
| AccI | GTMKAC | 1 cut(s) | 75 |
| AccIII | TCCGGA | 1 cut(s) | 988 |
| AciI | CCGC | 5 cut(s) | 27, 48, 185, 614, 1818 |
| AclWI | GGATC | 1 cut(s) | 1236 |
| AcsI | RAATTY | 3 cut(s) | 533, 1168, 1490 |
| AcuI | CTGAAG | 2 cut(s) | 153, 1601 |
| AcyI | GRCGYC | 1 cut(s) | 631 |
| AfaI | GTAC | 4 cut(s) | 263, 688, 825, 1207 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 306, 725 |
| AflIII | ACRYGT | 1 cut(s) | 1095 |
| AgsI | TTSAA | 9 cut(s) | 180, 202, 715, 1130, 1140, 1286, 1303, 1397, 1495 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1649 |
| AjnI | CCWGG | 3 cut(s) | 653, 787, 834 |
| AleI | CACNNNNGTG | 1 cut(s) | 1766 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 118, 150 |
| Alw21I | GWGCWC | 4 cut(s) | 733, 1474, 1578, 1828 |
| Alw26I | GTCTC | 5 cut(s) | 4, 1439, 1627, 1636, 1636 |
| AlwI | GGATC | 1 cut(s) | 1236 |
| Ama87I | CYCGRG | 2 cut(s) | 7, 732 |
| Aor13HI | TCCGGA | 1 cut(s) | 988 |
| AoxI | GGCC | 4 cut(s) | 28, 49, 887, 1036 |
| ApeKI | GCWGC | 5 cut(s) | 142, 777, 812, 980, 1808 |
| ApoI | RAATTY | 3 cut(s) | 533, 1168, 1490 |
| AseI | ATTAAT | 1 cut(s) | 1320 |
| AspS9I | GGNCC | 6 cut(s) | 59, 309, 785, 888, 1037, 1325 |
| AsuHPI | GGTGA | 1 cut(s) | 1367 |
| AsuII | TTCGAA | 1 cut(s) | 247 |
| AvaI | CYCGRG | 2 cut(s) | 7, 732 |
| AvaII | GGWCC | 4 cut(s) | 59, 309, 785, 1325 |
| BanII | GRGCYC | 2 cut(s) | 1080, 1578 |
| Bbv12I | GWGCWC | 4 cut(s) | 733, 1474, 1578, 1828 |
| BbvI | GCAGC | 5 cut(s) | 129, 789, 799, 967, 1820 |
| BccI | CCATC | 9 cut(s) | 35, 217, 247, 500, 590, 754, 1115, 1664, 1789 |
| BceAI | ACGGC | 2 cut(s) | 368, 1613 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 6, 40 |
| BciT130I | CCWGG | 3 cut(s) | 655, 789, 836 |
| BclI | TGATCA | 2 cut(s) | 606, 916 |
| BcoDI | GTCTC | 5 cut(s) | 4, 1439, 1627, 1636, 1636 |
| BfaI | CTAG | 5 cut(s) | 930, 1044, 1160, 1511, 1829 |
| BfmI | CTRYAG | 4 cut(s) | 143, 775, 1048, 1201 |
| BfuAI | ACCTGC | 1 cut(s) | 294 |
| BisI | GCNGC | 8 cut(s) | 28, 49, 143, 778, 813, 981, 1809, 1819 |
| BlpI | GCTNAGC | 1 cut(s) | 1473 |
| BlsI | GCNGC | 8 cut(s) | 29, 50, 144, 779, 814, 982, 1810, 1820 |
| BmcAI | AGTACT | 2 cut(s) | 688, 1207 |
| Bme1390I | CCNGG | 3 cut(s) | 655, 789, 836 |
| Bme18I | GGWCC | 4 cut(s) | 59, 309, 785, 1325 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1649 |
| BmeT110I | CYCGRG | 2 cut(s) | 7, 732 |
| BmgT120I | GGNCC | 6 cut(s) | 59, 309, 785, 888, 1037, 1325 |
| BmiI | GGNNCC | 1 cut(s) | 1449 |
| BmrFI | CCNGG | 3 cut(s) | 655, 789, 836 |
| BmrI | ACTGGG | 2 cut(s) | 131, 1074 |
| BmsI | GCATC | 3 cut(s) | 14, 1004, 1296 |
| BmuI | ACTGGG | 2 cut(s) | 131, 1074 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 726, 758 |
| BpmI | CTGGAG | 1 cut(s) | 1241 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1473 |
| Bpu14I | TTCGAA | 1 cut(s) | 247 |
| BpuEI | CTTGAG | 1 cut(s) | 1094 |
| BsaHI | GRCGYC | 1 cut(s) | 631 |
| BsaJI | CCNNGG | 5 cut(s) | 461, 653, 1238, 1351, 1451 |
| BsaWI | WCCGGW | 1 cut(s) | 988 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 306, 725 |
| Bse1I | ACTGG | 6 cut(s) | 126, 312, 684, 1024, 1080, 1085 |
| Bse3DI | GCAATG | 2 cut(s) | 787, 1039 |
| BseAI | TCCGGA | 1 cut(s) | 988 |
| BseBI | CCWGG | 3 cut(s) | 655, 789, 836 |
| BseDI | CCNNGG | 5 cut(s) | 461, 653, 1238, 1351, 1451 |
| BseGI | GGATG | 5 cut(s) | 228, 481, 995, 1757, 1800 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 306, 725 |
| BseMI | GCAATG | 2 cut(s) | 787, 1039 |
| BseMII | CTCAG | 3 cut(s) | 627, 1343, 1487 |
| BseNI | ACTGG | 6 cut(s) | 126, 312, 684, 1024, 1080, 1085 |
| BseRI | GAGGAG | 3 cut(s) | 1196, 1238, 1790 |
| BseXI | GCAGC | 5 cut(s) | 129, 789, 799, 967, 1820 |
| BsgI | GTGCAG | 2 cut(s) | 400, 405 |
| BshFI | GGCC | 4 cut(s) | 30, 51, 889, 1038 |
| BsiHKAI | GWGCWC | 4 cut(s) | 733, 1474, 1578, 1828 |
| BsiHKCI | CYCGRG | 2 cut(s) | 7, 732 |
| BsiSI | CCGG | 1 cut(s) | 989 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 306, 725 |
| BsmAI | GTCTC | 5 cut(s) | 4, 1439, 1627, 1636, 1636 |
| BsmBI | CGTCTC | 1 cut(s) | 1636 |
| BsmI | GAATGC | 1 cut(s) | 290 |
| BsnI | GGCC | 4 cut(s) | 30, 51, 889, 1038 |
| BsoBI | CYCGRG | 2 cut(s) | 7, 732 |
| Bsp119I | TTCGAA | 1 cut(s) | 247 |
| Bsp1286I | GDGCHC | 5 cut(s) | 733, 1080, 1474, 1578, 1828 |
| Bsp13I | TCCGGA | 1 cut(s) | 988 |
| Bsp143I | GATC | 6 cut(s) | 93, 606, 916, 1228, 1248, 1686 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1473 |
| Bsp19I | CCATGG | 2 cut(s) | 461, 1451 |
| BspACI | CCGC | 5 cut(s) | 27, 48, 185, 614, 1818 |
| BspANI | GGCC | 4 cut(s) | 30, 51, 889, 1038 |
| BspCNI | CTCAG | 3 cut(s) | 628, 1342, 1486 |
| BspEI | TCCGGA | 1 cut(s) | 988 |
| BspHI | TCATGA | 1 cut(s) | 1726 |
| BspLI | GGNNCC | 1 cut(s) | 1449 |
| BspMAI | CTGCAG | 3 cut(s) | 147, 779, 1205 |
| BspMI | ACCTGC | 1 cut(s) | 294 |
| BspPI | GGATC | 1 cut(s) | 1236 |
| BspT104I | TTCGAA | 1 cut(s) | 247 |
| BsrBI | CCGCTC | 1 cut(s) | 185 |
| BsrDI | GCAATG | 2 cut(s) | 787, 1039 |
| BsrI | ACTGG | 6 cut(s) | 126, 312, 684, 1024, 1080, 1085 |
| BssECI | CCNNGG | 5 cut(s) | 461, 653, 1238, 1351, 1451 |
| BssMI | GATC | 6 cut(s) | 93, 606, 916, 1228, 1248, 1686 |
| BssNI | GRCGYC | 1 cut(s) | 631 |
| BssT1I | CCWWGG | 3 cut(s) | 461, 1238, 1451 |
| Bst2UI | CCWGG | 3 cut(s) | 655, 789, 836 |
| Bst4CI | ACNGT | 3 cut(s) | 412, 842, 1559 |
| Bst6I | CTCTTC | 2 cut(s) | 563, 1778 |
| BstACI | GRCGYC | 1 cut(s) | 631 |
| BstBI | TTCGAA | 1 cut(s) | 247 |
| BstC8I | GCNNGC | 5 cut(s) | 405, 430, 1389, 1574, 1806 |
| BstDEI | CTNAG | 4 cut(s) | 512, 636, 1329, 1473 |
| BstDSI | CCRYGG | 2 cut(s) | 461, 1451 |
| BstEII | GGTNACC | 1 cut(s) | 1355 |
| BstF5I | GGATG | 5 cut(s) | 228, 481, 995, 1757, 1800 |
| BstKTI | GATC | 6 cut(s) | 96, 609, 919, 1231, 1251, 1689 |
| BstMAI | GTCTC | 5 cut(s) | 4, 1439, 1627, 1636, 1636 |
| BstMBI | GATC | 6 cut(s) | 93, 606, 916, 1228, 1248, 1686 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1044 |
| BstNI | CCWGG | 3 cut(s) | 655, 789, 836 |
| BstNSI | RCATGY | 2 cut(s) | 1099, 1247 |
| BstPI | GGTNACC | 1 cut(s) | 1355 |
| BstSCI | CCNGG | 3 cut(s) | 653, 787, 834 |
| BstSFI | CTRYAG | 4 cut(s) | 143, 775, 1048, 1201 |
| BstV1I | GCAGC | 5 cut(s) | 129, 789, 799, 967, 1820 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1768 |
| BsuRI | GGCC | 4 cut(s) | 30, 51, 889, 1038 |
| BtgI | CCRYGG | 2 cut(s) | 461, 1451 |
| BtsCI | GGATG | 5 cut(s) | 228, 481, 995, 1757, 1800 |
| BtsI | GCAGTG | 4 cut(s) | 388, 772, 1316, 1828 |
| BtsIMutI | CAGTG | 7 cut(s) | 319, 388, 408, 772, 1316, 1337, 1828 |
| BveI | ACCTGC | 1 cut(s) | 294 |
| Cac8I | GCNNGC | 5 cut(s) | 405, 430, 1389, 1574, 1806 |
| CciI | TCATGA | 1 cut(s) | 1726 |
| Cfr13I | GGNCC | 6 cut(s) | 59, 309, 785, 888, 1037, 1325 |
| CseI | GACGC | 1 cut(s) | 620 |
| Csp6I | GTAC | 4 cut(s) | 262, 687, 824, 1206 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1466, 1501 |
| CviQI | GTAC | 4 cut(s) | 262, 687, 824, 1206 |
| DdeI | CTNAG | 4 cut(s) | 512, 636, 1329, 1473 |
| DpnI | GATC | 6 cut(s) | 95, 608, 918, 1230, 1250, 1688 |
| DpnII | GATC | 6 cut(s) | 93, 606, 916, 1228, 1248, 1686 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 845 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1649 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 845 |
| Eam1104I | CTCTTC | 2 cut(s) | 563, 1778 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1649 |
| EarI | CTCTTC | 2 cut(s) | 563, 1778 |
| EciI | GGCGGA | 1 cut(s) | 629 |
| Ecl136II | GAGCTC | 1 cut(s) | 1576 |
| Eco130I | CCWWGG | 3 cut(s) | 461, 1238, 1451 |
| Eco24I | GRGCYC | 2 cut(s) | 1080, 1578 |
| Eco32I | GATATC | 1 cut(s) | 331 |
| Eco47I | GGWCC | 4 cut(s) | 59, 309, 785, 1325 |
| Eco53kI | GAGCTC | 1 cut(s) | 1576 |
| Eco57I | CTGAAG | 2 cut(s) | 153, 1601 |
| Eco88I | CYCGRG | 2 cut(s) | 7, 732 |
| Eco91I | GGTNACC | 1 cut(s) | 1355 |
| EcoICRI | GAGCTC | 1 cut(s) | 1576 |
| EcoO65I | GGTNACC | 1 cut(s) | 1355 |
| EcoRI | GAATTC | 1 cut(s) | 1490 |
| EcoRII | CCWGG | 3 cut(s) | 653, 787, 834 |
| EcoRV | GATATC | 1 cut(s) | 331 |
| EcoT14I | CCWWGG | 3 cut(s) | 461, 1238, 1451 |
| EcoT38I | GRGCYC | 2 cut(s) | 1080, 1578 |
| ErhI | CCWWGG | 3 cut(s) | 461, 1238, 1451 |
| Esp3I | CGTCTC | 1 cut(s) | 1636 |
| FbaI | TGATCA | 2 cut(s) | 606, 916 |
| FblI | GTMKAC | 1 cut(s) | 75 |
| Fnu4HI | GCNGC | 8 cut(s) | 28, 49, 143, 778, 813, 981, 1809, 1819 |
| FokI | GGATG | 5 cut(s) | 235, 468, 982, 1744, 1807 |
| FriOI | GRGCYC | 2 cut(s) | 1080, 1578 |
| Fsp4HI | GCNGC | 8 cut(s) | 28, 49, 143, 778, 813, 981, 1809, 1819 |
| FspBI | CTAG | 5 cut(s) | 930, 1044, 1160, 1511, 1829 |
| GluI | GCNGC | 8 cut(s) | 28, 49, 143, 778, 813, 981, 1809, 1819 |
| GsuI | CTGGAG | 1 cut(s) | 1241 |
| HaeIII | GGCC | 4 cut(s) | 30, 51, 889, 1038 |
| HapII | CCGG | 1 cut(s) | 989 |
| HgaI | GACGC | 1 cut(s) | 620 |
| Hin1I | GRCGYC | 1 cut(s) | 631 |
| HinfI | GANTC | 7 cut(s) | 715, 907, 1130, 1282, 1566, 1644, 1679 |
| HpaII | CCGG | 1 cut(s) | 989 |
| HphI | GGTGA | 1 cut(s) | 1367 |
| Hpy166II | GTNNAC | 5 cut(s) | 76, 137, 264, 317, 739 |
| Hpy188I | TCNGA | 4 cut(s) | 283, 367, 1180, 1747 |
| Hpy8I | GTNNAC | 5 cut(s) | 76, 137, 264, 317, 739 |
| Hpy99I | CGWCG | 4 cut(s) | 21, 41, 1655, 1673 |
| HpyAV | CCTTC | 4 cut(s) | 243, 496, 773, 1280 |
| HpyCH4III | ACNGT | 3 cut(s) | 412, 842, 1559 |
| HpyCH4IV | ACGT | 2 cut(s) | 1650, 1668 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1044 |
| HpyF3I | CTNAG | 4 cut(s) | 512, 636, 1329, 1473 |
| HpySE526I | ACGT | 2 cut(s) | 1650, 1668 |
| Hsp92I | GRCGYC | 1 cut(s) | 631 |
| Kpn2I | TCCGGA | 1 cut(s) | 988 |
| Ksp22I | TGATCA | 2 cut(s) | 606, 916 |
| Kzo9I | GATC | 6 cut(s) | 93, 606, 916, 1228, 1248, 1686 |
| LmnI | GCTCC | 3 cut(s) | 556, 1581, 1801 |
| Lsp1109I | GCAGC | 5 cut(s) | 129, 789, 799, 967, 1820 |
| LweI | GCATC | 3 cut(s) | 14, 1004, 1296 |
| MaeI | CTAG | 5 cut(s) | 930, 1044, 1160, 1511, 1829 |
| MaeII | ACGT | 2 cut(s) | 1650, 1668 |
| MaeIII | GTNAC | 4 cut(s) | 770, 1355, 1455, 1553 |
| MalI | GATC | 6 cut(s) | 95, 608, 918, 1230, 1250, 1688 |
| MbiI | CCGCTC | 1 cut(s) | 185 |
| MboI | GATC | 6 cut(s) | 93, 606, 916, 1228, 1248, 1686 |
| MboII | GAAGA | 9 cut(s) | 302, 305, 338, 580, 697, 700, 1327, 1594, 1795 |
| MfeI | CAATTG | 2 cut(s) | 423, 591 |
| MhlI | GDGCHC | 5 cut(s) | 733, 1080, 1474, 1578, 1828 |
| MlyI | GAGTC | 3 cut(s) | 901, 1638, 1688 |
| MmeI | TCCRAC | 1 cut(s) | 1549 |
| MroI | TCCGGA | 1 cut(s) | 988 |
| MseI | TTAA | 4 cut(s) | 1007, 1320, 1505, 1716 |
| MslI | CAYNNNNRTG | 2 cut(s) | 271, 1766 |
| MspA1I | CMGCKG | 3 cut(s) | 142, 1766, 1818 |
| MspI | CCGG | 1 cut(s) | 989 |
| MspR9I | CCNGG | 3 cut(s) | 655, 789, 836 |
| MunI | CAATTG | 2 cut(s) | 423, 591 |
| Mva1269I | GAATGC | 1 cut(s) | 290 |
| MvaI | CCWGG | 3 cut(s) | 655, 789, 836 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1044 |
| NcoI | CCATGG | 2 cut(s) | 461, 1451 |
| NdeII | GATC | 6 cut(s) | 93, 606, 916, 1228, 1248, 1686 |
| NlaIV | GGNNCC | 1 cut(s) | 1449 |
| NmuCI | GTSAC | 4 cut(s) | 770, 1355, 1455, 1553 |
| NspI | RCATGY | 2 cut(s) | 1099, 1247 |
| NspV | TTCGAA | 1 cut(s) | 247 |
| OliI | CACNNNNGTG | 1 cut(s) | 1766 |
| PaeR7I | CTCGAG | 1 cut(s) | 732 |
| PagI | TCATGA | 1 cut(s) | 1726 |
| PaqCI | CACCTGC | 1 cut(s) | 294 |
| PciI | ACATGT | 1 cut(s) | 1095 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 253 |
| PctI | GAATGC | 1 cut(s) | 290 |
| PfeI | GAWTC | 4 cut(s) | 715, 1130, 1282, 1566 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 306 |
| PkrI | GCNGC | 8 cut(s) | 29, 50, 144, 779, 814, 982, 1810, 1820 |
| PleI | GAGTC | 3 cut(s) | 901, 1638, 1687 |
| PpsI | GAGTC | 3 cut(s) | 901, 1638, 1687 |
| PscI | ACATGT | 1 cut(s) | 1095 |
| PshBI | ATTAAT | 1 cut(s) | 1320 |
| Psp124BI | GAGCTC | 1 cut(s) | 1578 |
| Psp6I | CCWGG | 3 cut(s) | 653, 787, 834 |
| PspEI | GGTNACC | 1 cut(s) | 1355 |
| PspGI | CCWGG | 3 cut(s) | 653, 787, 834 |
| PspN4I | GGNNCC | 1 cut(s) | 1449 |
| PspPI | GGNCC | 6 cut(s) | 59, 309, 785, 888, 1037, 1325 |
| PspXI | VCTCGAGB | 1 cut(s) | 732 |
| PstI | CTGCAG | 3 cut(s) | 147, 779, 1205 |
| PvuII | CAGCTG | 2 cut(s) | 142, 1766 |
| RsaI | GTAC | 4 cut(s) | 263, 688, 825, 1207 |
| RsaNI | GTAC | 4 cut(s) | 262, 687, 824, 1206 |
| RseI | CAYNNNNRTG | 2 cut(s) | 271, 1766 |
| SacI | GAGCTC | 1 cut(s) | 1578 |
| SaqAI | TTAA | 4 cut(s) | 1007, 1320, 1505, 1716 |
| SatI | GCNGC | 8 cut(s) | 28, 49, 143, 778, 813, 981, 1809, 1819 |
| Sau3AI | GATC | 6 cut(s) | 93, 606, 916, 1228, 1248, 1686 |
| Sau96I | GGNCC | 6 cut(s) | 59, 309, 785, 888, 1037, 1325 |
| ScaI | AGTACT | 2 cut(s) | 688, 1207 |
| SchI | GAGTC | 3 cut(s) | 901, 1638, 1688 |
| ScrFI | CCNGG | 3 cut(s) | 655, 789, 836 |
| SduI | GDGCHC | 5 cut(s) | 733, 1080, 1474, 1578, 1828 |
| SfaNI | GCATC | 3 cut(s) | 14, 1004, 1296 |
| SfcI | CTRYAG | 4 cut(s) | 143, 775, 1048, 1201 |
| Sfr274I | CTCGAG | 1 cut(s) | 732 |
| SfuI | TTCGAA | 1 cut(s) | 247 |
| SinI | GGWCC | 4 cut(s) | 59, 309, 785, 1325 |
| SlaI | CTCGAG | 1 cut(s) | 732 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 271, 1766 |
| SmlI | CTYRAG | 2 cut(s) | 732, 1073 |
| SmoI | CTYRAG | 2 cut(s) | 732, 1073 |
| SsiI | CCGC | 5 cut(s) | 27, 48, 185, 614, 1818 |
| SspMI | CTAG | 5 cut(s) | 930, 1044, 1160, 1511, 1829 |
| SstI | GAGCTC | 1 cut(s) | 1578 |
| StyD4I | CCNGG | 3 cut(s) | 653, 787, 834 |
| StyI | CCWWGG | 3 cut(s) | 461, 1238, 1451 |
| TaaI | ACNGT | 3 cut(s) | 412, 842, 1559 |
| TaiI | ACGT | 2 cut(s) | 1653, 1671 |
| TaqI | TCGA | 9 cut(s) | 16, 39, 247, 453, 733, 1294, 1564, 1671, 1689 |
| TaqII | GACCGA | 1 cut(s) | 93 |
| TatI | WGTACW | 3 cut(s) | 261, 686, 1205 |
| TauI | GCSGC | 3 cut(s) | 30, 51, 1821 |
| TfiI | GAWTC | 4 cut(s) | 715, 1130, 1282, 1566 |
| Tru1I | TTAA | 4 cut(s) | 1007, 1320, 1505, 1716 |
| Tru9I | TTAA | 4 cut(s) | 1007, 1320, 1505, 1716 |
| TscAI | CASTG | 7 cut(s) | 319, 388, 415, 779, 1316, 1337, 1828 |
| TseFI | GTSAC | 4 cut(s) | 770, 1355, 1455, 1553 |
| TseI | GCWGC | 5 cut(s) | 142, 777, 812, 980, 1808 |
| Tsp45I | GTSAC | 4 cut(s) | 770, 1355, 1455, 1553 |
| TspDTI | ATGAA | 4 cut(s) | 581, 662, 891, 1743 |
| TspGWI | ACGGA | 2 cut(s) | 25, 34 |
| TspRI | CASTG | 7 cut(s) | 319, 388, 415, 779, 1316, 1337, 1828 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 306 |
| VpaK11BI | GGWCC | 4 cut(s) | 59, 309, 785, 1325 |
| VspI | ATTAAT | 1 cut(s) | 1320 |
| XapI | RAATTY | 3 cut(s) | 533, 1168, 1490 |
| XceI | RCATGY | 2 cut(s) | 1099, 1247 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 415, 1006, 1031 |
| XhoI | CTCGAG | 1 cut(s) | 732 |
| XmiI | GTMKAC | 1 cut(s) | 75 |
| XspI | CTAG | 5 cut(s) | 930, 1044, 1160, 1511, 1829 |
| ZrmI | AGTACT | 2 cut(s) | 688, 1207 |