Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Beta-prop_KIB1-4 | PF03478 | 66 - 225 | 6.8e-16 | KIB1-4 beta-propeller |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 697 |
| AclWI | GGATC | 2 cut(s) | 764, 777 |
| AcsI | RAATTY | 4 cut(s) | 101, 200, 885, 1064 |
| AcuI | CTGAAG | 2 cut(s) | 468, 1011 |
| AcyI | GRCGYC | 1 cut(s) | 298 |
| AdeI | CACNNNGTG | 1 cut(s) | 766 |
| AfaI | GTAC | 3 cut(s) | 355, 489, 879 |
| AgsI | TTSAA | 2 cut(s) | 827, 844 |
| AjnI | CCWGG | 3 cut(s) | 320, 454, 978 |
| AluBI | AGCT | 4 cut(s) | 74, 218, 542, 689 |
| AluI | AGCT | 4 cut(s) | 74, 218, 542, 689 |
| Alw21I | GWGCWC | 2 cut(s) | 400, 907 |
| Alw26I | GTCTC | 1 cut(s) | 969 |
| AlwI | GGATC | 2 cut(s) | 764, 777 |
| Ama87I | CYCGRG | 1 cut(s) | 399 |
| AoxI | GGCC | 3 cut(s) | 551, 678, 1033 |
| ApaI | GGGCCC | 1 cut(s) | 1037 |
| ApeKI | GCWGC | 3 cut(s) | 444, 623, 1118 |
| ApoI | RAATTY | 4 cut(s) | 101, 200, 885, 1064 |
| AspS9I | GGNCC | 6 cut(s) | 452, 570, 679, 866, 1033, 1034 |
| AsuHPI | GGTGA | 2 cut(s) | 812, 1109 |
| AvaI | CYCGRG | 1 cut(s) | 399 |
| AvaII | GGWCC | 3 cut(s) | 452, 570, 866 |
| AxyI | CCTNAGG | 1 cut(s) | 303 |
| BaeGI | GKGCMC | 1 cut(s) | 1037 |
| BamHI | GGATCC | 1 cut(s) | 769 |
| BanII | GRGCYC | 1 cut(s) | 1037 |
| BauI | CACGAG | 1 cut(s) | 761 |
| BbsI | GAAGAC | 1 cut(s) | 990 |
| Bbv12I | GWGCWC | 2 cut(s) | 400, 907 |
| BbvI | GCAGC | 3 cut(s) | 456, 610, 1105 |
| BccI | CCATC | 5 cut(s) | 257, 351, 421, 602, 841 |
| BciT130I | CCWGG | 3 cut(s) | 322, 456, 980 |
| BciVI | GTATCC | 1 cut(s) | 1116 |
| BclI | TGATCA | 1 cut(s) | 273 |
| BcoDI | GTCTC | 1 cut(s) | 969 |
| BfaI | CTAG | 3 cut(s) | 686, 890, 1147 |
| BfmI | CTRYAG | 4 cut(s) | 442, 547, 690, 818 |
| BfuI | GTATCC | 1 cut(s) | 1116 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1032 |
| BisI | GCNGC | 3 cut(s) | 445, 624, 1119 |
| BlsI | GCNGC | 3 cut(s) | 446, 625, 1120 |
| BmcAI | AGTACT | 1 cut(s) | 355 |
| Bme1390I | CCNGG | 3 cut(s) | 322, 456, 980 |
| Bme18I | GGWCC | 3 cut(s) | 452, 570, 866 |
| BmeT110I | CYCGRG | 1 cut(s) | 399 |
| BmgT120I | GGNCC | 6 cut(s) | 452, 570, 679, 866, 1033, 1034 |
| BmiI | GGNNCC | 2 cut(s) | 771, 1035 |
| BmrFI | CCNGG | 3 cut(s) | 322, 456, 980 |
| BmsI | GCATC | 3 cut(s) | 396, 647, 1013 |
| BpiI | GAAGAC | 1 cut(s) | 990 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 393, 425 |
| BsaHI | GRCGYC | 1 cut(s) | 298 |
| BsaI | GGTCTC | 1 cut(s) | 969 |
| BsaJI | CCNNGG | 3 cut(s) | 128, 320, 779 |
| Bse21I | CCTNAGG | 1 cut(s) | 303 |
| Bse3DI | GCAATG | 1 cut(s) | 454 |
| BseBI | CCWGG | 3 cut(s) | 322, 456, 980 |
| BseDI | CCNNGG | 3 cut(s) | 128, 320, 779 |
| BseGI | GGATG | 4 cut(s) | 148, 638, 663, 931 |
| BseMI | GCAATG | 1 cut(s) | 454 |
| BseMII | CTCAG | 3 cut(s) | 294, 481, 884 |
| BseRI | GAGGAG | 1 cut(s) | 737 |
| BseSI | GKGCMC | 1 cut(s) | 1037 |
| BseXI | GCAGC | 3 cut(s) | 456, 610, 1105 |
| BsgI | GTGCAG | 3 cut(s) | 67, 72, 1104 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1041 |
| BshFI | GGCC | 3 cut(s) | 553, 680, 1035 |
| BsiEI | CGRYCG | 1 cut(s) | 1041 |
| BsiHKAI | GWGCWC | 2 cut(s) | 400, 907 |
| BsiHKCI | CYCGRG | 1 cut(s) | 399 |
| BsmAI | GTCTC | 1 cut(s) | 969 |
| BsnI | GGCC | 3 cut(s) | 553, 680, 1035 |
| Bso31I | GGTCTC | 1 cut(s) | 969 |
| BsoBI | CYCGRG | 1 cut(s) | 399 |
| Bsp120I | GGGCCC | 1 cut(s) | 1033 |
| Bsp1286I | GDGCHC | 3 cut(s) | 400, 907, 1037 |
| Bsp143I | GATC | 3 cut(s) | 273, 769, 1038 |
| Bsp19I | CCATGG | 1 cut(s) | 128 |
| BspACI | CCGC | 1 cut(s) | 697 |
| BspANI | GGCC | 3 cut(s) | 553, 680, 1035 |
| BspCNI | CTCAG | 3 cut(s) | 295, 480, 883 |
| BspHI | TCATGA | 1 cut(s) | 945 |
| BspLI | GGNNCC | 2 cut(s) | 771, 1035 |
| BspMAI | CTGCAG | 1 cut(s) | 446 |
| BspPI | GGATC | 2 cut(s) | 764, 777 |
| BspTNI | GGTCTC | 1 cut(s) | 969 |
| BsrDI | GCAATG | 1 cut(s) | 454 |
| BssECI | CCNNGG | 3 cut(s) | 128, 320, 779 |
| BssMI | GATC | 3 cut(s) | 273, 769, 1038 |
| BssNI | GRCGYC | 1 cut(s) | 298 |
| BssSI | CACGAG | 1 cut(s) | 761 |
| BssT1I | CCWWGG | 2 cut(s) | 128, 779 |
| Bst2BI | CACGAG | 1 cut(s) | 761 |
| Bst2UI | CCWGG | 3 cut(s) | 322, 456, 980 |
| Bst4CI | ACNGT | 3 cut(s) | 21, 79, 506 |
| Bst6I | CTCTTC | 1 cut(s) | 487 |
| BstACI | GRCGYC | 1 cut(s) | 298 |
| BstC8I | GCNNGC | 2 cut(s) | 97, 555 |
| BstDEI | CTNAG | 3 cut(s) | 303, 467, 870 |
| BstDSI | CCRYGG | 1 cut(s) | 128 |
| BstF5I | GGATG | 4 cut(s) | 148, 638, 663, 931 |
| BstKTI | GATC | 3 cut(s) | 276, 772, 1041 |
| BstMAI | GTCTC | 1 cut(s) | 969 |
| BstMBI | GATC | 3 cut(s) | 273, 769, 1038 |
| BstMCI | CGRYCG | 1 cut(s) | 1041 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 686, 1032 |
| BstNI | CCWGG | 3 cut(s) | 322, 456, 980 |
| BstNSI | RCATGY | 1 cut(s) | 788 |
| BstSCI | CCNGG | 3 cut(s) | 320, 454, 978 |
| BstSFI | CTRYAG | 4 cut(s) | 442, 547, 690, 818 |
| BstSLI | GKGCMC | 1 cut(s) | 1037 |
| BstV1I | GCAGC | 3 cut(s) | 456, 610, 1105 |
| BstV2I | GAAGAC | 1 cut(s) | 990 |
| BstX2I | RGATCY | 1 cut(s) | 769 |
| BstYI | RGATCY | 1 cut(s) | 769 |
| Bsu36I | CCTNAGG | 1 cut(s) | 303 |
| BsuI | GTATCC | 1 cut(s) | 1116 |
| BsuRI | GGCC | 3 cut(s) | 553, 680, 1035 |
| BtgI | CCRYGG | 1 cut(s) | 128 |
| BtsCI | GGATG | 4 cut(s) | 148, 638, 663, 931 |
| BtsI | GCAGTG | 3 cut(s) | 55, 439, 1121 |
| BtsIMutI | CAGTG | 5 cut(s) | 55, 439, 475, 878, 1121 |
| Cac8I | GCNNGC | 2 cut(s) | 97, 555 |
| CciI | TCATGA | 1 cut(s) | 945 |
| Cfr13I | GGNCC | 6 cut(s) | 452, 570, 679, 866, 1033, 1034 |
| CseI | GACGC | 1 cut(s) | 287 |
| Csp6I | GTAC | 3 cut(s) | 354, 488, 878 |
| CviAII | CATG | 8 cut(s) | 129, 136, 277, 435, 567, 785, 946, 1010 |
| CviQI | GTAC | 3 cut(s) | 354, 488, 878 |
| DdeI | CTNAG | 3 cut(s) | 303, 467, 870 |
| DpnI | GATC | 3 cut(s) | 275, 771, 1040 |
| DpnII | GATC | 3 cut(s) | 273, 769, 1038 |
| DraIII | CACNNNGTG | 1 cut(s) | 766 |
| Eam1104I | CTCTTC | 1 cut(s) | 487 |
| EarI | CTCTTC | 1 cut(s) | 487 |
| EciI | GGCGGA | 1 cut(s) | 712 |
| Eco130I | CCWWGG | 2 cut(s) | 128, 779 |
| Eco147I | AGGCCT | 1 cut(s) | 553 |
| Eco24I | GRGCYC | 1 cut(s) | 1037 |
| Eco31I | GGTCTC | 1 cut(s) | 969 |
| Eco47I | GGWCC | 3 cut(s) | 452, 570, 866 |
| Eco57I | CTGAAG | 2 cut(s) | 468, 1011 |
| Eco81I | CCTNAGG | 1 cut(s) | 303 |
| Eco88I | CYCGRG | 1 cut(s) | 399 |
| EcoRII | CCWGG | 3 cut(s) | 320, 454, 978 |
| EcoT14I | CCWWGG | 2 cut(s) | 128, 779 |
| EcoT38I | GRGCYC | 1 cut(s) | 1037 |
| ErhI | CCWWGG | 2 cut(s) | 128, 779 |
| FaeI | CATG | 8 cut(s) | 132, 139, 280, 438, 570, 788, 949, 1013 |
| FatI | CATG | 8 cut(s) | 128, 135, 276, 434, 566, 784, 945, 1009 |
| FbaI | TGATCA | 1 cut(s) | 273 |
| Fnu4HI | GCNGC | 3 cut(s) | 445, 624, 1119 |
| FokI | GGATG | 4 cut(s) | 135, 625, 650, 918 |
| FriOI | GRGCYC | 1 cut(s) | 1037 |
| Fsp4HI | GCNGC | 3 cut(s) | 445, 624, 1119 |
| FspBI | CTAG | 3 cut(s) | 686, 890, 1147 |
| GluI | GCNGC | 3 cut(s) | 445, 624, 1119 |
| HaeIII | GGCC | 3 cut(s) | 553, 680, 1035 |
| HgaI | GACGC | 1 cut(s) | 287 |
| Hin1I | GRCGYC | 1 cut(s) | 298 |
| Hin1II | CATG | 8 cut(s) | 132, 139, 280, 438, 570, 788, 949, 1013 |
| HinfI | GANTC | 4 cut(s) | 710, 823, 942, 986 |
| HphI | GGTGA | 2 cut(s) | 812, 1109 |
| Hpy188I | TCNGA | 4 cut(s) | 34, 348, 721, 991 |
| Hpy188III | TCNNGA | 6 cut(s) | 302, 590, 761, 844, 946, 1042 |
| HpyAV | CCTTC | 4 cut(s) | 163, 440, 850, 1059 |
| HpyCH4III | ACNGT | 3 cut(s) | 21, 79, 506 |
| HpyCH4V | TGCA | 9 cut(s) | 4, 48, 53, 210, 444, 525, 626, 920, 1121 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 686, 1032 |
| HpyF3I | CTNAG | 3 cut(s) | 303, 467, 870 |
| Hsp92I | GRCGYC | 1 cut(s) | 298 |
| Hsp92II | CATG | 8 cut(s) | 132, 139, 280, 438, 570, 788, 949, 1013 |
| Ksp22I | TGATCA | 1 cut(s) | 273 |
| Kzo9I | GATC | 3 cut(s) | 273, 769, 1038 |
| LmnI | GCTCC | 2 cut(s) | 223, 414 |
| Lsp1109I | GCAGC | 3 cut(s) | 456, 610, 1105 |
| LweI | GCATC | 3 cut(s) | 396, 647, 1013 |
| MaeI | CTAG | 3 cut(s) | 686, 890, 1147 |
| MaeIII | GTNAC | 4 cut(s) | 437, 472, 808, 1097 |
| MalI | GATC | 3 cut(s) | 275, 771, 1040 |
| MboI | GATC | 3 cut(s) | 273, 769, 1038 |
| MfeI | CAATTG | 2 cut(s) | 90, 258 |
| MflI | RGATCY | 1 cut(s) | 769 |
| MhlI | GDGCHC | 3 cut(s) | 400, 907, 1037 |
| MluCI | AATT | 8 cut(s) | 90, 101, 169, 200, 258, 603, 885, 1064 |
| MlyI | GAGTC | 2 cut(s) | 951, 980 |
| MseI | TTAA | 3 cut(s) | 339, 380, 861 |
| MspR9I | CCNGG | 3 cut(s) | 322, 456, 980 |
| MunI | CAATTG | 2 cut(s) | 90, 258 |
| MvaI | CCWGG | 3 cut(s) | 322, 456, 980 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 686, 1032 |
| NcoI | CCATGG | 1 cut(s) | 128 |
| NdeII | GATC | 3 cut(s) | 273, 769, 1038 |
| NlaIII | CATG | 8 cut(s) | 132, 139, 280, 438, 570, 788, 949, 1013 |
| NlaIV | GGNNCC | 2 cut(s) | 771, 1035 |
| NmuCI | GTSAC | 3 cut(s) | 437, 808, 1097 |
| NspI | RCATGY | 1 cut(s) | 788 |
| PaeR7I | CTCGAG | 1 cut(s) | 399 |
| PagI | TCATGA | 1 cut(s) | 945 |
| PceI | AGGCCT | 1 cut(s) | 553 |
| PfeI | GAWTC | 2 cut(s) | 710, 823 |
| PkrI | GCNGC | 3 cut(s) | 446, 625, 1120 |
| Ple19I | CGATCG | 1 cut(s) | 1041 |
| PleI | GAGTC | 2 cut(s) | 950, 980 |
| PpsI | GAGTC | 2 cut(s) | 950, 980 |
| Psp6I | CCWGG | 3 cut(s) | 320, 454, 978 |
| PspGI | CCWGG | 3 cut(s) | 320, 454, 978 |
| PspN4I | GGNNCC | 2 cut(s) | 771, 1035 |
| PspOMI | GGGCCC | 1 cut(s) | 1033 |
| PspPI | GGNCC | 6 cut(s) | 452, 570, 679, 866, 1033, 1034 |
| PspXI | VCTCGAGB | 1 cut(s) | 399 |
| PstI | CTGCAG | 1 cut(s) | 446 |
| PsuI | RGATCY | 1 cut(s) | 769 |
| PvuI | CGATCG | 1 cut(s) | 1041 |
| RsaI | GTAC | 3 cut(s) | 355, 489, 879 |
| RsaNI | GTAC | 3 cut(s) | 354, 488, 878 |
| SaqAI | TTAA | 3 cut(s) | 339, 380, 861 |
| SatI | GCNGC | 3 cut(s) | 445, 624, 1119 |
| Sau3AI | GATC | 3 cut(s) | 273, 769, 1038 |
| Sau96I | GGNCC | 6 cut(s) | 452, 570, 679, 866, 1033, 1034 |
| ScaI | AGTACT | 1 cut(s) | 355 |
| SchI | GAGTC | 2 cut(s) | 951, 980 |
| ScrFI | CCNGG | 3 cut(s) | 322, 456, 980 |
| SduI | GDGCHC | 3 cut(s) | 400, 907, 1037 |
| SetI | ASST | 8 cut(s) | 76, 220, 457, 544, 691, 768, 861, 981 |
| SfaNI | GCATC | 3 cut(s) | 396, 647, 1013 |
| SfcI | CTRYAG | 4 cut(s) | 442, 547, 690, 818 |
| Sfr274I | CTCGAG | 1 cut(s) | 399 |
| SinI | GGWCC | 3 cut(s) | 452, 570, 866 |
| SlaI | CTCGAG | 1 cut(s) | 399 |
| SmlI | CTYRAG | 1 cut(s) | 399 |
| SmoI | CTYRAG | 1 cut(s) | 399 |
| Sse9I | AATT | 8 cut(s) | 90, 101, 169, 200, 258, 603, 885, 1064 |
| SseBI | AGGCCT | 1 cut(s) | 553 |
| SsiI | CCGC | 1 cut(s) | 697 |
| SspMI | CTAG | 3 cut(s) | 686, 890, 1147 |
| StuI | AGGCCT | 1 cut(s) | 553 |
| StyD4I | CCNGG | 3 cut(s) | 320, 454, 978 |
| StyI | CCWWGG | 2 cut(s) | 128, 779 |
| TaaI | ACNGT | 3 cut(s) | 21, 79, 506 |
| TaqI | TCGA | 2 cut(s) | 400, 1041 |
| TaqII | GACCGA | 1 cut(s) | 521 |
| TasI | AATT | 8 cut(s) | 90, 101, 169, 200, 258, 603, 885, 1064 |
| TatI | WGTACW | 1 cut(s) | 353 |
| TfiI | GAWTC | 2 cut(s) | 710, 823 |
| Tru1I | TTAA | 3 cut(s) | 339, 380, 861 |
| Tru9I | TTAA | 3 cut(s) | 339, 380, 861 |
| TscAI | CASTG | 5 cut(s) | 55, 446, 475, 878, 1128 |
| TseFI | GTSAC | 3 cut(s) | 437, 808, 1097 |
| TseI | GCWGC | 3 cut(s) | 444, 623, 1118 |
| Tsp45I | GTSAC | 3 cut(s) | 437, 808, 1097 |
| TspDTI | ATGAA | 5 cut(s) | 248, 329, 962, 1026, 1106 |
| TspGWI | ACGGA | 3 cut(s) | 647, 705, 762 |
| TspRI | CASTG | 5 cut(s) | 55, 446, 475, 878, 1128 |
| VpaK11BI | GGWCC | 3 cut(s) | 452, 570, 866 |
| XapI | RAATTY | 4 cut(s) | 101, 200, 885, 1064 |
| XceI | RCATGY | 1 cut(s) | 788 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 649 |
| XhoI | CTCGAG | 1 cut(s) | 399 |
| XspI | CTAG | 3 cut(s) | 686, 890, 1147 |
| ZrmI | AGTACT | 1 cut(s) | 355 |