FvH4_6g21291

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000142
Physical Location & Seq
Reverse (-)
14827074 .. 14828104
1031 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g21291.t1

Sequence Viewer

Length: 816 bp
ATGATTCTGAAGCGTCTAACCCTAGTCGATTCAATCAGATTCGCTGCTGTTTGTTCTACTTGGAAAAGTGTATCATCACAATGGCTTCAACGAGCAACCCGACTTCCATGGCTCTTGAGATCCTCTTGGTTTCTAGACTCAGAAACCGTGAATTATAGTCTCTACAGTCCAAGTGAAGACACAGTCTACGACCTCAAGTTTCCAAGTGCTTCACGCAGTAGTAATGAGATACTTTGCTCGGGCTCTGTTCATGGCTGGCTGATTATGTCTGAATGGACAAAAAAGCAACGGTTTTGTGATATCACGGCCATCAATTACTTCTTGAACCCAATGACAGGTGATCGTATTTCGCTTCCCCAGCTGACCGGAATCATCCGATGGTGGTCCTCGGCCTCTTCAGATCCAACAAGCTCTGATTACATTGTTGCAATTGCACAATGGTCACAGTTAGTGTTTTGCAGGCCAAATCGTCTTACATGCGAAGGTAAAAGCAAGTATCAGAAAATCATTGTTTGCAAGGAAAAGACAATAAAAGCTGGAAGCCTCTCTGCAGATCGTATGGCACCCGTGTGTTACTCGGCTCCGTCAATTACCTGGTCCTCCAAAGGTGAGTTTTTTGTGGCTTGGAAGAGGCTTAGACCTAAGGAGCACGACAAGCTTCCCGAGTTTCCAATAATTTATGTGTTAAAGACGGATGATACAAGTAGTTGTAATCCAATTTGGGTGAACGCAATGAACGATGTTGGTCAAGACCAAGTGCTCTTGTTATCGGACTTGCACAGCACCTTAAGCCCAAGTCATTTATGCCAATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

272

Amino Acids

30.83

Weight (kDa)

8.81

Isoelectric Point (pI)

46.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 54 - 175 6.8e-14 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000142)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 562
AccI GTMKAC 1 cut(s) 186
AclWI GGATC 2 cut(s) 114, 395
AcoI YGGCCR 1 cut(s) 306
AcuI CTGAAG 2 cut(s) 29, 381
AfiI CCNNNNNNNGG 1 cut(s) 335
AflII CTTAAG 1 cut(s) 787
AgsI TTSAA 3 cut(s) 33, 89, 325
AjnI CCWGG 1 cut(s) 593
AleI CACNNNNGTG 1 cut(s) 568
AluBI AGCT 4 cut(s) 361, 411, 536, 658
AluI AGCT 4 cut(s) 361, 411, 536, 658
Alw21I GWGCWC 2 cut(s) 651, 762
Alw26I GTCTC 1 cut(s) 164
AlwI GGATC 2 cut(s) 114, 395
Ama87I CYCGRG 2 cut(s) 238, 662
AoxI GGCC 3 cut(s) 306, 390, 461
ApeKI GCWGC 1 cut(s) 44
AspS9I GGNCC 2 cut(s) 384, 597
AsuHPI GGTGA 3 cut(s) 350, 620, 736
AvaI CYCGRG 2 cut(s) 238, 662
AvaII GGWCC 2 cut(s) 384, 597
AxyI CCTNAGG 1 cut(s) 642
BanI GGYRCC 1 cut(s) 562
BanII GRGCYC 1 cut(s) 245
BbsI GAAGAC 1 cut(s) 183
Bbv12I GWGCWC 2 cut(s) 651, 762
BbvI GCAGC 1 cut(s) 31
BccI CCATC 2 cut(s) 317, 372
BceAI ACGGC 1 cut(s) 321
BciT130I CCWGG 1 cut(s) 595
BcoDI GTCTC 1 cut(s) 164
BfaI CTAG 3 cut(s) 23, 134, 814
BfmI CTRYAG 2 cut(s) 163, 549
BfrI CTTAAG 1 cut(s) 787
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
Bme1390I CCNGG 1 cut(s) 595
Bme18I GGWCC 2 cut(s) 384, 597
BmeT110I CYCGRG 2 cut(s) 238, 662
BmgT120I GGNCC 2 cut(s) 384, 597
BmiI GGNNCC 2 cut(s) 564, 582
BmrFI CCNGG 1 cut(s) 595
BpiI GAAGAC 1 cut(s) 183
BpuEI CTTGAG 2 cut(s) 136, 179
BsaJI CCNNGG 2 cut(s) 107, 387
BsaWI WCCGGW 1 cut(s) 365
Bsc4I CCNNNNNNNGG 1 cut(s) 335
Bse21I CCTNAGG 1 cut(s) 642
Bse3DI GCAATG 1 cut(s) 738
BseBI CCWGG 1 cut(s) 595
BseDI CCNNGG 2 cut(s) 107, 387
BseGI GGATG 2 cut(s) 372, 700
BseLI CCNNNNNNNGG 1 cut(s) 335
BseMI GCAATG 1 cut(s) 738
BseMII CTCAG 1 cut(s) 153
BseXI GCAGC 1 cut(s) 31
BseYI CCCAGC 1 cut(s) 357
BshFI GGCC 3 cut(s) 308, 392, 463
BshNI GGYRCC 1 cut(s) 562
BsiHKAI GWGCWC 2 cut(s) 651, 762
BsiHKCI CYCGRG 2 cut(s) 238, 662
BsiSI CCGG 1 cut(s) 366
BslI CCNNNNNNNGG 1 cut(s) 335
BsmAI GTCTC 1 cut(s) 164
BsnI GGCC 3 cut(s) 308, 392, 463
BsoBI CYCGRG 2 cut(s) 238, 662
Bsp1286I GDGCHC 3 cut(s) 245, 651, 762
Bsp143I GATC 4 cut(s) 119, 340, 400, 553
Bsp19I CCATGG 1 cut(s) 107
BspANI GGCC 3 cut(s) 308, 392, 463
BspCNI CTCAG 1 cut(s) 152
BspLI GGNNCC 2 cut(s) 564, 582
BspMAI CTGCAG 1 cut(s) 553
BspPI GGATC 2 cut(s) 114, 395
BspT107I GGYRCC 1 cut(s) 562
BspTI CTTAAG 1 cut(s) 787
BsrDI GCAATG 1 cut(s) 738
BssECI CCNNGG 2 cut(s) 107, 387
BssMI GATC 4 cut(s) 119, 340, 400, 553
BssT1I CCWWGG 1 cut(s) 107
Bst2UI CCWGG 1 cut(s) 595
Bst4CI ACNGT 5 cut(s) 148, 167, 184, 291, 447
Bst6I CTCTTC 2 cut(s) 400, 623
BstAFI CTTAAG 1 cut(s) 787
BstC8I GCNNGC 2 cut(s) 257, 461
BstDEI CTNAG 3 cut(s) 139, 635, 642
BstDSI CCRYGG 1 cut(s) 107
BstF5I GGATG 2 cut(s) 372, 700
BstKTI GATC 4 cut(s) 122, 343, 403, 556
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 4 cut(s) 119, 340, 400, 553
BstMWI GCNNNNNNNGC 3 cut(s) 358, 655, 789
BstNI CCWGG 1 cut(s) 595
BstNSI RCATGY 1 cut(s) 480
BstSCI CCNGG 1 cut(s) 593
BstSFI CTRYAG 2 cut(s) 163, 549
BstV1I GCAGC 1 cut(s) 31
BstV2I GAAGAC 1 cut(s) 183
BstX2I RGATCY 2 cut(s) 119, 400
BstYI RGATCY 2 cut(s) 119, 400
Bsu36I CCTNAGG 1 cut(s) 642
BsuRI GGCC 3 cut(s) 308, 392, 463
BtgI CCRYGG 1 cut(s) 107
BtsCI GGATG 2 cut(s) 372, 700
Cac8I GCNNGC 2 cut(s) 257, 461
Cfr13I GGNCC 2 cut(s) 384, 597
CseI GACGC 1 cut(s) 2
CsiI ACCWGGT 1 cut(s) 593
CviAII CATG 3 cut(s) 108, 251, 477
DdeI CTNAG 3 cut(s) 139, 635, 642
DpnI GATC 4 cut(s) 121, 342, 402, 555
DpnII GATC 4 cut(s) 119, 340, 400, 553
EaeI YGGCCR 1 cut(s) 306
Eam1104I CTCTTC 2 cut(s) 400, 623
EarI CTCTTC 2 cut(s) 400, 623
Eco130I CCWWGG 1 cut(s) 107
Eco24I GRGCYC 1 cut(s) 245
Eco32I GATATC 1 cut(s) 301
Eco47I GGWCC 2 cut(s) 384, 597
Eco57I CTGAAG 2 cut(s) 29, 381
Eco81I CCTNAGG 1 cut(s) 642
Eco88I CYCGRG 2 cut(s) 238, 662
EcoRII CCWGG 1 cut(s) 593
EcoRV GATATC 1 cut(s) 301
EcoT14I CCWWGG 1 cut(s) 107
EcoT38I GRGCYC 1 cut(s) 245
ErhI CCWWGG 1 cut(s) 107
FaeI CATG 3 cut(s) 111, 254, 480
FaiI YATR 8 cut(s) 109, 156, 252, 266, 478, 560, 681, 805
FatI CATG 3 cut(s) 107, 250, 476
FblI GTMKAC 1 cut(s) 186
Fnu4HI GCNGC 1 cut(s) 45
FokI GGATG 2 cut(s) 359, 707
FriOI GRGCYC 1 cut(s) 245
Fsp4HI GCNGC 1 cut(s) 45
FspBI CTAG 3 cut(s) 23, 134, 814
GluI GCNGC 1 cut(s) 45
GsaI CCCAGC 1 cut(s) 361
HaeIII GGCC 3 cut(s) 308, 392, 463
HapII CCGG 1 cut(s) 366
HgaI GACGC 1 cut(s) 2
Hin1II CATG 3 cut(s) 111, 254, 480
HindIII AAGCTT 1 cut(s) 656
HinfI GANTC 5 cut(s) 4, 29, 39, 137, 369
HpaII CCGG 1 cut(s) 366
HphI GGTGA 3 cut(s) 350, 620, 736
Hpy166II GTNNAC 2 cut(s) 187, 727
Hpy188I TCNGA 9 cut(s) 9, 38, 142, 271, 377, 400, 415, 501, 772
Hpy188III TCNNGA 5 cut(s) 115, 134, 322, 662, 749
Hpy8I GTNNAC 2 cut(s) 187, 727
HpyAV CCTTC 1 cut(s) 476
HpyCH4III ACNGT 5 cut(s) 148, 167, 184, 291, 447
HpyCH4V TGCA 6 cut(s) 428, 434, 459, 516, 551, 778
HpyF10VI GCNNNNNNNGC 3 cut(s) 358, 655, 789
HpyF3I CTNAG 3 cut(s) 139, 635, 642
Hsp92II CATG 3 cut(s) 111, 254, 480
Kzo9I GATC 4 cut(s) 119, 340, 400, 553
LmnI GCTCC 2 cut(s) 586, 646
LpnPI CCDG 8 cut(s) 241, 321, 371, 379, 445, 522, 580, 607
Lsp1109I GCAGC 1 cut(s) 31
MabI ACCWGGT 1 cut(s) 593
MaeI CTAG 3 cut(s) 23, 134, 814
MaeIII GTNAC 2 cut(s) 441, 572
MalI GATC 4 cut(s) 121, 342, 402, 555
MboI GATC 4 cut(s) 119, 340, 400, 553
MboII GAAGA 3 cut(s) 188, 387, 640
MfeI CAATTG 1 cut(s) 429
MflI RGATCY 2 cut(s) 119, 400
MhlI GDGCHC 3 cut(s) 245, 651, 762
MluCI AATT 6 cut(s) 151, 313, 429, 588, 675, 717
MlyI GAGTC 1 cut(s) 131
MmeI TCCRAC 1 cut(s) 428
MnlI CCTC 7 cut(s) 133, 203, 397, 403, 554, 610, 624
MseI TTAA 2 cut(s) 686, 788
MslI CAYNNNNRTG 2 cut(s) 79, 568
MspA1I CMGCKG 1 cut(s) 361
MspCI CTTAAG 1 cut(s) 787
MspI CCGG 1 cut(s) 366
MspR9I CCNGG 1 cut(s) 595
MunI CAATTG 1 cut(s) 429
MvaI CCWGG 1 cut(s) 595
MwoI GCNNNNNNNGC 3 cut(s) 358, 655, 789
NcoI CCATGG 1 cut(s) 107
NdeII GATC 4 cut(s) 119, 340, 400, 553
NlaIII CATG 3 cut(s) 111, 254, 480
NlaIV GGNNCC 2 cut(s) 564, 582
NmeAIII GCCGAG 2 cut(s) 368, 557
NmuCI GTSAC 1 cut(s) 441
NspI RCATGY 1 cut(s) 480
OliI CACNNNNGTG 1 cut(s) 568
PcsI WCGNNNNNNNCGW 2 cut(s) 97, 735
PfeI GAWTC 4 cut(s) 4, 29, 39, 369
PflFI GACNNNGTC 1 cut(s) 182
PkrI GCNGC 1 cut(s) 46
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
Psp6I CCWGG 1 cut(s) 593
PspFI CCCAGC 1 cut(s) 357
PspGI CCWGG 1 cut(s) 593
PspN4I GGNNCC 2 cut(s) 564, 582
PspPI GGNCC 2 cut(s) 384, 597
PstI CTGCAG 1 cut(s) 553
PsuI RGATCY 2 cut(s) 119, 400
PsyI GACNNNGTC 1 cut(s) 182
PvuII CAGCTG 1 cut(s) 361
RseI CAYNNNNRTG 2 cut(s) 79, 568
SaqAI TTAA 2 cut(s) 686, 788
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 4 cut(s) 119, 340, 400, 553
Sau96I GGNCC 2 cut(s) 384, 597
SchI GAGTC 1 cut(s) 131
ScrFI CCNGG 1 cut(s) 595
SduI GDGCHC 3 cut(s) 245, 651, 762
SexAI ACCWGGT 1 cut(s) 593
SfcI CTRYAG 2 cut(s) 163, 549
SinI GGWCC 2 cut(s) 384, 597
SmiMI CAYNNNNRTG 2 cut(s) 79, 568
SmlI CTYRAG 3 cut(s) 115, 194, 787
SmoI CTYRAG 3 cut(s) 115, 194, 787
Sse9I AATT 6 cut(s) 151, 313, 429, 588, 675, 717
SspMI CTAG 3 cut(s) 23, 134, 814
StyD4I CCNGG 1 cut(s) 593
StyI CCWWGG 1 cut(s) 107
TaaI ACNGT 5 cut(s) 148, 167, 184, 291, 447
TaqI TCGA 1 cut(s) 27
TasI AATT 6 cut(s) 151, 313, 429, 588, 675, 717
TfiI GAWTC 4 cut(s) 4, 29, 39, 369
Tru1I TTAA 2 cut(s) 686, 788
Tru9I TTAA 2 cut(s) 686, 788
TseFI GTSAC 1 cut(s) 441
TseI GCWGC 1 cut(s) 44
Tsp45I GTSAC 1 cut(s) 441
TspDTI ATGAA 2 cut(s) 239, 749
TspGWI ACGGA 2 cut(s) 573, 707
Tth111I GACNNNGTC 1 cut(s) 182
Vha464I CTTAAG 1 cut(s) 787
VpaK11BI GGWCC 2 cut(s) 384, 597
XbaI TCTAGA 1 cut(s) 133
XceI RCATGY 1 cut(s) 480
XmiI GTMKAC 1 cut(s) 186
XspI CTAG 3 cut(s) 23, 134, 814
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.