Rorug02G0520900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000142
Physical Location & Seq
Reverse (-)
65262460 .. 65266064
3605 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0520900.1

Sequence Viewer

Length: 1623 bp
ATGTGGCTGGCTACCGTACCTCACCGTCACCGACCCCTTCCTCCGGTTCCGACGACCCTCACCGCTCGTCCGAATCCGAAGCTGTTCTATCATTCTCTTCCCAAACCAGCCTCGTTTCGTTTCGGTCTCCGCCTCCGCCTCCGCCTCAACAGCTACAAAGCTTCGGCGGCAAAGAAGCAGCTGCCGGAGGTAGCAACTCGAAAATCAGATAGTGAGAAATTTCGGTCACAAGAGGAAAAGAACGGTGAAGGTTTGGATTTGGGATGGTTGCCTGCTTTTCCTCACGTGTTTATTGCCTCCATGTCCAATTTTCTTTTTGGTTATCACATAGGGGTGATGAATGGTCCGATTGTTTCGATTGCTCGAGAACTCGGATTTGAAGGTAATTCAATTCTCGAGGGGCTTGTGGTGAGCATATTTATAGTTGGTGCATTTCTTGGAAGCATATGCTGCGGTTCGATTGTAGATAAACTTGGCTGTAGGAGGACCTTTCAGATTGACACCATTCCTTTGATTCTTGGAGCATTGATAAGTGCACAAGCGCATTCCTTGGATGAAGTACTTTTGGGAAGGTTTCTTGTTGGCCTCGGCATAGGGGTTAACACTGTTCTTGTTCCTATCTATATATCAGAGATTGCTCCAACAAAATATAGAGGTTCATTGGGAACCTTGTGTCAAATTGGCACATGTCTTGGGATCATTTCATCACTGTTTCTTGGAATTCCCTCAGAAACTGATCCACACTGGTGGAGGACAATGCTGTATATCGCAAGTGTCCCTGGATTTGTCCTCGCACTTGGAATGCAATTTGCTGTAGATAGCCCCCGTTGGCTATGCAAGGTTGGGAGATTGAGCAATGCTAAAGAAGTGATCAAAAATGTTTGGGGAGCATCTGAAGTTGAAAAGGCAGTTGAAGAATTTCAGGCAGTAATCAAGAATGATGGTAGTGATTTGGAAAGCAGTTGGTTGGAGCTATTGGAAGAGCCAAACTCTAGAGTTGCATGCATAGGAGGTGCCCTTTTTGTACTTCAACAGTTCGCGGGTATAAATGGGGTTCTTTACTTTTCATCACTGACTTTTCAAGATGTTGGAATTACAAGTAGTGCTTTAGCAAGCTTGCTTGTTGGTGTTACCAACTTTGCAGGAGCACTTTGTGCTTTGTACTTGATTGATAAACAGGGGAGGCAGAAGCTTTTGATTGGAAGTTACTTAGGAATGGCACTTTCAATGTTTCTTGTGGTCTATGCGATCAGTTTTCCACTAGATGAGGAACTAGGTCACAACTTATCAATACTGGGAACAGTCATGTACATATTTACCTTTGCAATAGGAGCCGGCCCGGTCACTGGACTTGTCATACCAGAACTCAGCAGTAGCAGATCACGGGGGAAGATCATGGGATTCAGTTTTTCTGCTCACTGGGTTTGCAACTTCTTGGTGGGTTTATTTTTCCTCGACTTGGTGGAGAAATTCGGAGTTGCTCCAGTTTATGGTACCTTTGGCGGAGTTTCCTTGTTGGCAGCAATATTTTCTACCTACTTTATAGTTGAAACCAAAGGGCGCTCCCTTGAGGATATAGAAATGTCACTAAGCTCAGATTTCATTGCCAGAGGCAAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295

Protein Analysis

540

Amino Acids

58.69

Weight (kDa)

8.28

Isoelectric Point (pI)

35.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 96 - 527 3.5e-100 Sugar (and other) transporter
MFS_1 PF07690 99 - 473 2.8e-22 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000142)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1493
AccB1I GGYRCC 2 cut(s) 1013, 1493
AccB7I CCANNNNNTGG 1 cut(s) 1490
AccBSI CCGCTC 1 cut(s) 65
AccII CGCG 1 cut(s) 1040
AciI CCGC 8 cut(s) 63, 130, 136, 142, 167, 453, 1040, 1503
AclWI GGATC 2 cut(s) 704, 731
AcsI RAATTY 4 cut(s) 218, 720, 917, 1469
AcuI CTGAAG 1 cut(s) 915
AcvI CACGTG 1 cut(s) 286
AdeI CACNNNGTG 1 cut(s) 1154
AfaI GTAC 6 cut(s) 18, 561, 1026, 1163, 1310, 1495
AfiI CCNNNNNNNGG 4 cut(s) 43, 1346, 1459, 1490
AflIII ACRYGT 2 cut(s) 285, 686
AgsI TTSAA 8 cut(s) 380, 390, 902, 914, 1031, 1082, 1227, 1550
AjnI CCWGG 1 cut(s) 778
AleI CACNNNNGTG 1 cut(s) 745
AluBI AGCT 8 cut(s) 82, 153, 161, 181, 973, 1116, 1192, 1593
AluI AGCT 8 cut(s) 82, 153, 161, 181, 973, 1116, 1192, 1593
Alw21I GWGCWC 2 cut(s) 538, 1150
Alw26I GTCTC 1 cut(s) 131
Alw44I GTGCAC 1 cut(s) 534
AlwI GGATC 2 cut(s) 704, 731
AlwNI CAGNNNCTG 1 cut(s) 734
Ama87I CYCGRG 2 cut(s) 363, 395
AoxI GGCC 2 cut(s) 583, 1336
ApaLI GTGCAC 1 cut(s) 534
ApeKI GCWGC 4 cut(s) 178, 181, 450, 1520
ApoI RAATTY 4 cut(s) 218, 720, 917, 1469
Asp700I GAANNNNTTC 2 cut(s) 83, 918
Asp718I GGTACC 1 cut(s) 1493
AspLEI GCGC 2 cut(s) 544, 1563
AspS9I GGNCC 3 cut(s) 344, 486, 1337
AsuC2I CCSGG 1 cut(s) 1340
AsuHPI GGTGA 6 cut(s) 14, 20, 52, 257, 346, 421
AvaI CYCGRG 2 cut(s) 363, 395
AvaII GGWCC 2 cut(s) 344, 486
BaeGI GKGCMC 2 cut(s) 538, 1018
BanI GGYRCC 2 cut(s) 1013, 1493
BbrPI CACGTG 1 cut(s) 286
Bbv12I GWGCWC 2 cut(s) 538, 1150
BbvI GCAGC 4 cut(s) 168, 190, 437, 1532
BccI CCATC 2 cut(s) 258, 935
BciT130I CCWGG 1 cut(s) 780
BclI TGATCA 1 cut(s) 870
BcnI CCSGG 1 cut(s) 1340
BcoDI GTCTC 1 cut(s) 131
BfaI CTAG 3 cut(s) 993, 1262, 1274
BfmI CTRYAG 2 cut(s) 478, 813
BfoI RGCGCY 1 cut(s) 1564
BisI GCNGC 5 cut(s) 168, 179, 182, 451, 1521
BlsI GCNGC 5 cut(s) 169, 180, 183, 452, 1522
BmcAI AGTACT 1 cut(s) 561
Bme1390I CCNGG 2 cut(s) 780, 1340
Bme18I GGWCC 2 cut(s) 344, 486
BmeT110I CYCGRG 2 cut(s) 363, 395
BmgT120I GGNCC 3 cut(s) 344, 486, 1337
BmiI GGNNCC 5 cut(s) 48, 667, 1015, 1333, 1495
BmrFI CCNGG 2 cut(s) 780, 1340
BmrI ACTGGG 2 cut(s) 1304, 1429
BmsI GCATC 1 cut(s) 899
BmuI ACTGGG 2 cut(s) 1304, 1429
BplI GAGNNNNNCTC 2 cut(s) 974, 1006
BpmI CTGGAG 1 cut(s) 1467
BpuEI CTTGAG 1 cut(s) 1589
BpuMI CCSGG 1 cut(s) 1340
BsaAI YACGTR 1 cut(s) 286
BsaI GGTCTC 1 cut(s) 131
BsaJI CCNNGG 3 cut(s) 549, 586, 778
BsaWI WCCGGW 1 cut(s) 43
Bsc4I CCNNNNNNNGG 4 cut(s) 43, 1346, 1459, 1490
Bse118I RCCGGY 1 cut(s) 1334
Bse1I ACTGG 5 cut(s) 749, 1299, 1351, 1424, 1484
Bse3DI GCAATG 2 cut(s) 862, 1602
BseBI CCWGG 1 cut(s) 780
BseDI CCNNGG 3 cut(s) 549, 586, 778
BseGI GGATG 2 cut(s) 269, 559
BseLI CCNNNNNNNGG 4 cut(s) 43, 1346, 1459, 1490
BseMI GCAATG 2 cut(s) 862, 1602
BseMII CTCAG 3 cut(s) 741, 1381, 1608
BseNI ACTGG 5 cut(s) 749, 1299, 1351, 1424, 1484
BseSI GKGCMC 2 cut(s) 538, 1018
BseXI GCAGC 4 cut(s) 168, 190, 437, 1532
Bsh1236I CGCG 1 cut(s) 1040
BshFI GGCC 2 cut(s) 585, 1338
BshNI GGYRCC 2 cut(s) 1013, 1493
BsiHKAI GWGCWC 2 cut(s) 538, 1150
BsiHKCI CYCGRG 2 cut(s) 363, 395
BsiSI CCGG 4 cut(s) 44, 185, 1335, 1340
BslFI GGGAC 1 cut(s) 761
BslI CCNNNNNNNGG 4 cut(s) 43, 1346, 1459, 1490
BsmAI GTCTC 1 cut(s) 131
BsmFI GGGAC 1 cut(s) 761
BsmI GAATGC 2 cut(s) 544, 807
BsnI GGCC 2 cut(s) 585, 1338
Bso31I GGTCTC 1 cut(s) 131
BsoBI CYCGRG 2 cut(s) 363, 395
Bsp1286I GDGCHC 3 cut(s) 538, 1018, 1150
Bsp1407I TGTACA 1 cut(s) 1308
Bsp143I GATC 6 cut(s) 696, 736, 870, 1248, 1379, 1392
BspACI CCGC 8 cut(s) 63, 130, 136, 142, 167, 453, 1040, 1503
BspANI GGCC 2 cut(s) 585, 1338
BspCNI CTCAG 3 cut(s) 740, 1380, 1607
BspFNI CGCG 1 cut(s) 1040
BspLI GGNNCC 5 cut(s) 48, 667, 1015, 1333, 1495
BspPI GGATC 2 cut(s) 704, 731
BspQI GCTCTTC 1 cut(s) 975
BspT107I GGYRCC 2 cut(s) 1013, 1493
BspTNI GGTCTC 1 cut(s) 131
BsrBI CCGCTC 1 cut(s) 65
BsrDI GCAATG 2 cut(s) 862, 1602
BsrFI RCCGGY 1 cut(s) 1334
BsrGI TGTACA 1 cut(s) 1308
BsrI ACTGG 5 cut(s) 749, 1299, 1351, 1424, 1484
BssAI RCCGGY 1 cut(s) 1334
BssECI CCNNGG 3 cut(s) 549, 586, 778
BssMI GATC 6 cut(s) 696, 736, 870, 1248, 1379, 1392
BssT1I CCWWGG 1 cut(s) 549
Bst2UI CCWGG 1 cut(s) 780
Bst4CI ACNGT 7 cut(s) 16, 26, 245, 607, 711, 1035, 1303
Bst6I CTCTTC 2 cut(s) 102, 975
BstAPI GCANNNNNTGC 2 cut(s) 450, 1154
BstAUI TGTACA 1 cut(s) 1308
BstBAI YACGTR 1 cut(s) 286
BstC8I GCNNGC 6 cut(s) 9, 273, 1003, 1114, 1118, 1336
BstDEI CTNAG 5 cut(s) 727, 1210, 1367, 1589, 1594
BstF5I GGATG 2 cut(s) 269, 559
BstFNI CGCG 1 cut(s) 1040
BstH2I RGCGCY 1 cut(s) 1564
BstHHI GCGC 2 cut(s) 544, 1563
BstKTI GATC 6 cut(s) 699, 739, 873, 1251, 1382, 1395
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 6 cut(s) 696, 736, 870, 1248, 1379, 1392
BstMWI GCNNNNNNNGC 5 cut(s) 150, 167, 450, 1154, 1331
BstNI CCWGG 1 cut(s) 780
BstNSI RCATGY 2 cut(s) 690, 1005
BstSCI CCNGG 2 cut(s) 778, 1338
BstSFI CTRYAG 2 cut(s) 478, 813
BstSLI GKGCMC 2 cut(s) 538, 1018
BstUI CGCG 1 cut(s) 1040
BstV1I GCAGC 4 cut(s) 168, 190, 437, 1532
BstXI CCANNNNNNTGG 1 cut(s) 747
BsuRI GGCC 2 cut(s) 585, 1338
BtsCI GGATG 2 cut(s) 269, 559
BtsIMutI CAGTG 6 cut(s) 603, 707, 742, 1070, 1344, 1417
Cac8I GCNNGC 6 cut(s) 9, 273, 1003, 1114, 1118, 1336
CaiI CAGNNNCTG 1 cut(s) 734
CfoI GCGC 2 cut(s) 544, 1563
Cfr10I RCCGGY 1 cut(s) 1334
Cfr13I GGNCC 3 cut(s) 344, 486, 1337
Csp6I GTAC 6 cut(s) 17, 560, 1025, 1162, 1309, 1494
CviAII CATG 5 cut(s) 301, 687, 1002, 1306, 1396
CviQI GTAC 6 cut(s) 17, 560, 1025, 1162, 1309, 1494
DdeI CTNAG 5 cut(s) 727, 1210, 1367, 1589, 1594
DpnI GATC 6 cut(s) 698, 738, 872, 1250, 1381, 1394
DpnII GATC 6 cut(s) 696, 736, 870, 1248, 1379, 1392
DraIII CACNNNGTG 1 cut(s) 1154
Eam1104I CTCTTC 2 cut(s) 102, 975
EarI CTCTTC 2 cut(s) 102, 975
EciI GGCGGA 4 cut(s) 119, 125, 131, 1518
Eco130I CCWWGG 1 cut(s) 549
Eco31I GGTCTC 1 cut(s) 131
Eco47I GGWCC 2 cut(s) 344, 486
Eco57I CTGAAG 1 cut(s) 915
Eco72I CACGTG 1 cut(s) 286
Eco88I CYCGRG 2 cut(s) 363, 395
EcoO109I RGGNCCY 1 cut(s) 486
EcoRI GAATTC 1 cut(s) 720
EcoRII CCWGG 1 cut(s) 778
EcoT14I CCWWGG 1 cut(s) 549
EcoT22I ATGCAT 1 cut(s) 1007
ErhI CCWWGG 1 cut(s) 549
FaeI CATG 5 cut(s) 304, 690, 1005, 1309, 1399
FalI AAGNNNNNCTT 2 cut(s) 1090, 1122
FaqI GGGAC 1 cut(s) 761
FatI CATG 5 cut(s) 300, 686, 1001, 1305, 1395
FauI CCCGC 1 cut(s) 1033
FauNDI CATATG 1 cut(s) 446
FbaI TGATCA 1 cut(s) 870
Fnu4HI GCNGC 5 cut(s) 168, 179, 182, 451, 1521
FokI GGATG 2 cut(s) 276, 566
Fsp4HI GCNGC 5 cut(s) 168, 179, 182, 451, 1521
FspBI CTAG 3 cut(s) 993, 1262, 1274
GlaI GCGC 2 cut(s) 543, 1562
GluI GCNGC 5 cut(s) 168, 179, 182, 451, 1521
GsuI CTGGAG 1 cut(s) 1467
HaeII RGCGCY 1 cut(s) 1564
HaeIII GGCC 2 cut(s) 585, 1338
HapII CCGG 4 cut(s) 44, 185, 1335, 1340
HhaI GCGC 2 cut(s) 544, 1563
Hin1II CATG 5 cut(s) 304, 690, 1005, 1309, 1399
Hin6I GCGC 2 cut(s) 542, 1561
HinP1I GCGC 2 cut(s) 542, 1561
HincII GTYRAC 1 cut(s) 601
HindII GTYRAC 1 cut(s) 601
HindIII AAGCTT 3 cut(s) 159, 1114, 1190
HinfI GANTC 3 cut(s) 73, 514, 1401
HpaI GTTAAC 1 cut(s) 601
HpaII CCGG 4 cut(s) 44, 185, 1335, 1340
HphI GGTGA 6 cut(s) 14, 20, 52, 257, 346, 421
Hpy166II GTNNAC 2 cut(s) 536, 601
Hpy188III TCNNGA 5 cut(s) 365, 395, 934, 993, 1082
Hpy8I GTNNAC 2 cut(s) 536, 601
Hpy99I CGWCG 1 cut(s) 55
HpyAV CCTTC 4 cut(s) 47, 242, 374, 564
HpyCH4III ACNGT 7 cut(s) 16, 26, 245, 607, 711, 1035, 1303
HpyCH4IV ACGT 1 cut(s) 285
HpyCH4V TGCA 9 cut(s) 431, 536, 805, 837, 1001, 1005, 1142, 1325, 1428
HpyF10VI GCNNNNNNNGC 5 cut(s) 150, 167, 450, 1154, 1331
HpyF3I CTNAG 5 cut(s) 727, 1210, 1367, 1589, 1594
HpySE526I ACGT 1 cut(s) 285
Hsp92II CATG 5 cut(s) 304, 690, 1005, 1309, 1399
HspAI GCGC 2 cut(s) 542, 1561
KpnI GGTACC 1 cut(s) 1497
KroI GCCGGC 1 cut(s) 1334
KroNI GCCGGC 1 cut(s) 1336
Ksp22I TGATCA 1 cut(s) 870
KspAI GTTAAC 1 cut(s) 601
Kzo9I GATC 6 cut(s) 696, 736, 870, 1248, 1379, 1392
LguI GCTCTTC 1 cut(s) 975
LmnI GCTCC 8 cut(s) 521, 643, 887, 970, 1145, 1331, 1486, 1568
Lsp1109I GCAGC 4 cut(s) 168, 190, 437, 1532
LweI GCATC 1 cut(s) 899
MaeI CTAG 3 cut(s) 993, 1262, 1274
MaeII ACGT 1 cut(s) 285
MaeIII GTNAC 7 cut(s) 26, 225, 1129, 1205, 1277, 1342, 1584
MalI GATC 6 cut(s) 698, 738, 872, 1250, 1381, 1394
MbiI CCGCTC 1 cut(s) 65
MboI GATC 6 cut(s) 696, 736, 870, 1248, 1379, 1392
MboII GAAGA 4 cut(s) 89, 926, 992, 1402
MhlI GDGCHC 3 cut(s) 538, 1018, 1150
MmeI TCCRAC 4 cut(s) 74, 665, 948, 1069
Mph1103I ATGCAT 1 cut(s) 1007
MroNI GCCGGC 1 cut(s) 1334
MroXI GAANNNNTTC 2 cut(s) 83, 918
MseI TTAA 1 cut(s) 600
MslI CAYNNNNRTG 2 cut(s) 332, 745
MspA1I CMGCKG 1 cut(s) 181
MspI CCGG 4 cut(s) 44, 185, 1335, 1340
MspR9I CCNGG 2 cut(s) 780, 1340
Mva1269I GAATGC 2 cut(s) 544, 807
MvaI CCWGG 1 cut(s) 780
MvnI CGCG 1 cut(s) 1040
MwoI GCNNNNNNNGC 5 cut(s) 150, 167, 450, 1154, 1331
NaeI GCCGGC 1 cut(s) 1336
NciI CCSGG 1 cut(s) 1340
NdeI CATATG 1 cut(s) 446
NdeII GATC 6 cut(s) 696, 736, 870, 1248, 1379, 1392
NgoMIV GCCGGC 1 cut(s) 1334
NlaIII CATG 5 cut(s) 304, 690, 1005, 1309, 1399
NlaIV GGNNCC 5 cut(s) 48, 667, 1015, 1333, 1495
NmeAIII GCCGAG 1 cut(s) 567
NmuCI GTSAC 5 cut(s) 26, 225, 1277, 1342, 1584
NsiI ATGCAT 1 cut(s) 1007
NspI RCATGY 2 cut(s) 690, 1005
OliI CACNNNNGTG 1 cut(s) 745
PaeI GCATGC 1 cut(s) 1005
PaeR7I CTCGAG 2 cut(s) 363, 395
PciI ACATGT 1 cut(s) 686
PciSI GCTCTTC 1 cut(s) 975
PctI GAATGC 2 cut(s) 544, 807
PdiI GCCGGC 1 cut(s) 1336
PdmI GAANNNNTTC 2 cut(s) 83, 918
PfeI GAWTC 3 cut(s) 73, 514, 1401
PflMI CCANNNNNTGG 1 cut(s) 1490
PkrI GCNGC 5 cut(s) 169, 180, 183, 452, 1522
PmaCI CACGTG 1 cut(s) 286
PmlI CACGTG 1 cut(s) 286
Ppu21I YACGTR 1 cut(s) 286
PpuMI RGGWCCY 1 cut(s) 486
PscI ACATGT 1 cut(s) 686
Psp5II RGGWCCY 1 cut(s) 486
Psp6I CCWGG 1 cut(s) 778
PspCI CACGTG 1 cut(s) 286
PspGI CCWGG 1 cut(s) 778
PspN4I GGNNCC 5 cut(s) 48, 667, 1015, 1333, 1495
PspPI GGNCC 3 cut(s) 344, 486, 1337
PspPPI RGGWCCY 1 cut(s) 486
PstNI CAGNNNCTG 1 cut(s) 734
PvuII CAGCTG 1 cut(s) 181
RsaI GTAC 6 cut(s) 18, 561, 1026, 1163, 1310, 1495
RsaNI GTAC 6 cut(s) 17, 560, 1025, 1162, 1309, 1494
RseI CAYNNNNRTG 2 cut(s) 332, 745
SapI GCTCTTC 1 cut(s) 975
SaqAI TTAA 1 cut(s) 600
SatI GCNGC 5 cut(s) 168, 179, 182, 451, 1521
Sau3AI GATC 6 cut(s) 696, 736, 870, 1248, 1379, 1392
Sau96I GGNCC 3 cut(s) 344, 486, 1337
ScaI AGTACT 1 cut(s) 561
ScrFI CCNGG 2 cut(s) 780, 1340
SduI GDGCHC 3 cut(s) 538, 1018, 1150
SfaNI GCATC 1 cut(s) 899
SfcI CTRYAG 2 cut(s) 478, 813
Sfr274I CTCGAG 2 cut(s) 363, 395
SinI GGWCC 2 cut(s) 344, 486
SlaI CTCGAG 2 cut(s) 363, 395
SmiMI CAYNNNNRTG 2 cut(s) 332, 745
SmlI CTYRAG 3 cut(s) 363, 395, 1568
SmoI CTYRAG 3 cut(s) 363, 395, 1568
SphI GCATGC 1 cut(s) 1005
SsiI CCGC 8 cut(s) 63, 130, 136, 142, 167, 453, 1040, 1503
SspI AATATT 1 cut(s) 1527
SspMI CTAG 3 cut(s) 993, 1262, 1274
StyD4I CCNGG 2 cut(s) 778, 1338
StyI CCWWGG 1 cut(s) 549
TaaI ACNGT 7 cut(s) 16, 26, 245, 607, 711, 1035, 1303
TaiI ACGT 1 cut(s) 288
TaqI TCGA 6 cut(s) 199, 356, 364, 396, 458, 1455
TaqII GACCGA 2 cut(s) 113, 213
TatI WGTACW 4 cut(s) 559, 1024, 1161, 1308
TauI GCSGC 1 cut(s) 170
TfiI GAWTC 3 cut(s) 73, 514, 1401
Tru1I TTAA 1 cut(s) 600
Tru9I TTAA 1 cut(s) 600
TscAI CASTG 6 cut(s) 610, 714, 749, 1077, 1351, 1424
TseFI GTSAC 5 cut(s) 26, 225, 1277, 1342, 1584
TseI GCWGC 4 cut(s) 178, 181, 450, 1520
Tsp45I GTSAC 5 cut(s) 26, 225, 1277, 1342, 1584
TspDTI ATGAA 6 cut(s) 353, 570, 648, 693, 1056, 1591
TspRI CASTG 6 cut(s) 610, 714, 749, 1077, 1351, 1424
Van91I CCANNNNNTGG 1 cut(s) 1490
VneI GTGCAC 1 cut(s) 534
VpaK11BI GGWCC 2 cut(s) 344, 486
XapI RAATTY 4 cut(s) 218, 720, 917, 1469
XbaI TCTAGA 1 cut(s) 992
XceI RCATGY 2 cut(s) 690, 1005
XhoI CTCGAG 2 cut(s) 363, 395
XmnI GAANNNNTTC 2 cut(s) 83, 918
XspI CTAG 3 cut(s) 993, 1262, 1274
ZrmI AGTACT 1 cut(s) 561
Zsp2I ATGCAT 1 cut(s) 1007
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.