Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020961.1

Orthogroup ID

OG0000142

Physical Location & Seq

Genomic Coordinates Reverse (-)

3959 .. 4969

Gene Structure 1011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020961.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

atgacggagacgatgggggagaaggagatcaggtggtcgcaaggactcccagatgatatcttgcaattgatagcacaacgactatgcatatcagattaccaagtgtttcgccaagtatgcccttattggcgagccgctgtggatagaggtattgccaccgggtcttgccctcctgctcctcaactcccatggcttttgctcttcacctgcaatggcttggcacggtctttagattctctccatgccttctacatcaaacaccaacactcctcggatcgatcttgtcctcctgctcctcaacttccatggcttttgctccacgactcaagatggtcagctgggactcatgattctctcgatgcgttctgcaccgaacaacaccaatactcctttctaagggctccaacatctttcagatcagaaatgatgtctcctgtttatgattctttccgacattgggttggttcaatcgagtcgtggctgatcgtagctgtttatcaacgatgccgcaataacaacaactctactgtcgtcaacttcttcttgaatccactatccccgagtcatgctcccatcaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010468 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030684 GO:0030686 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070545 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904 GO:2000232

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT_2 Pescadillo_N

Protein Analysis

193

Amino Acids

22.09

Weight (kDa)

6.69

Isoelectric Point (pI)

68.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000142)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica	MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica	Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis	pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis	RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata	RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora	Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa	Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha	Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana	Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	215
Acc36I	ACCTGC	1 cut(s)	215
AciI	CCGC	2 cut(s)	135, 508
AclWI	GGATC	1 cut(s)	282
AfiI	CCNNNNNNNGG	2 cut(s)	396, 457
AgsI	TTSAA	2 cut(s)	468, 547
AjuI	GAANNNNNNNTTGG	2 cut(s)	375, 407
AluBI	AGCT	2 cut(s)	338, 491
AluI	AGCT	2 cut(s)	338, 491
Alw26I	GTCTC	2 cut(s)	2, 435
AlwI	GGATC	1 cut(s)	282
Ama87I	CYCGRG	1 cut(s)	559
AsuC2I	CCSGG	1 cut(s)	160
AsuHPI	GGTGA	1 cut(s)	196
AvaI	CYCGRG	1 cut(s)	559
BanII	GRGCYC	1 cut(s)	403
BccI	CCATC	3 cut(s)	7, 324, 581
BcnI	CCSGG	1 cut(s)	160
BcoDI	GTCTC	2 cut(s)	2, 435
BfuAI	ACCTGC	1 cut(s)	215
BisI	GCNGC	2 cut(s)	135, 508
BlsI	GCNGC	2 cut(s)	136, 509
Bme1390I	CCNGG	1 cut(s)	160
BmeT110I	CYCGRG	1 cut(s)	559
BmiI	GGNNCC	1 cut(s)	402
BmrFI	CCNGG	1 cut(s)	160
BmsI	GCATC	2 cut(s)	349, 494
BplI	GAGNNNNNCTC	1 cut(s)	553
BpuEI	CTTGAG	1 cut(s)	310
BpuMI	CCSGG	1 cut(s)	160
Bsa29I	ATCGAT	1 cut(s)	277
BsaJI	CCNNGG	3 cut(s)	188, 270, 305
BsaXI	ACNNNNNCTCC	6 cut(s)	17, 47, 251, 281, 371, 401
Bsc4I	CCNNNNNNNGG	2 cut(s)	396, 457
Bse3DI	GCAATG	1 cut(s)	217
BseCI	ATCGAT	1 cut(s)	277
BseDI	CCNNGG	3 cut(s)	188, 270, 305
BseLI	CCNNNNNNNGG	2 cut(s)	396, 457
BseMI	GCAATG	1 cut(s)	217
BseRI	GAGGAG	3 cut(s)	168, 259, 285
BseYI	CCCAGC	1 cut(s)	338
BsgI	GTGCAG	1 cut(s)	352
BshVI	ATCGAT	1 cut(s)	277
BsiHKCI	CYCGRG	1 cut(s)	559
BsiSI	CCGG	1 cut(s)	159
BslFI	GGGAC	1 cut(s)	355
BslI	CCNNNNNNNGG	2 cut(s)	396, 457
BsmAI	GTCTC	2 cut(s)	2, 435
BsmBI	CGTCTC	1 cut(s)	2
BsmFI	GGGAC	1 cut(s)	355
BsoBI	CYCGRG	1 cut(s)	559
Bsp1286I	GDGCHC	1 cut(s)	403
Bsp143I	GATC	5 cut(s)	27, 274, 278, 416, 483
Bsp19I	CCATGG	2 cut(s)	188, 305
BspACI	CCGC	2 cut(s)	135, 508
BspDI	ATCGAT	1 cut(s)	277
BspHI	TCATGA	1 cut(s)	346
BspLI	GGNNCC	1 cut(s)	402
BspMI	ACCTGC	1 cut(s)	215
BspPI	GGATC	1 cut(s)	282
BspQI	GCTCTTC	1 cut(s)	206
BsrDI	GCAATG	1 cut(s)	217
BssECI	CCNNGG	3 cut(s)	188, 270, 305
BssMI	GATC	5 cut(s)	27, 274, 278, 416, 483
BssT1I	CCWWGG	2 cut(s)	188, 305
Bst4CI	ACNGT	2 cut(s)	225, 529
Bst6I	CTCTTC	1 cut(s)	206
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	1 cut(s)	395
BstDSI	CCRYGG	2 cut(s)	188, 305
BstENI	CCTNNNNNAGG	1 cut(s)	394
BstKTI	GATC	5 cut(s)	30, 277, 281, 419, 486
BstMAI	GTCTC	2 cut(s)	2, 435
BstMBI	GATC	5 cut(s)	27, 274, 278, 416, 483
BstMWI	GCNNNNNNNGC	1 cut(s)	117
BstSCI	CCNGG	1 cut(s)	158
Bsu15I	ATCGAT	1 cut(s)	277
BsuTUI	ATCGAT	1 cut(s)	277
BtgI	CCRYGG	2 cut(s)	188, 305
BveI	ACCTGC	1 cut(s)	215
Cac8I	GCNNGC	1 cut(s)	132
CciI	TCATGA	1 cut(s)	346
ClaI	ATCGAT	1 cut(s)	277
CviAII	CATG	5 cut(s)	189, 242, 306, 347, 566
CviJI	RGCY	8 cut(s)	134, 193, 216, 310, 338, 401, 481, 491
CviKI_1	RGCY	8 cut(s)	134, 193, 216, 310, 338, 401, 481, 491
DdeI	CTNAG	1 cut(s)	395
DpnI	GATC	5 cut(s)	29, 276, 280, 418, 485
DpnII	GATC	5 cut(s)	27, 274, 278, 416, 483
Eam1104I	CTCTTC	1 cut(s)	206
EarI	CTCTTC	1 cut(s)	206
Eco130I	CCWWGG	2 cut(s)	188, 305
Eco24I	GRGCYC	1 cut(s)	403
Eco32I	GATATC	1 cut(s)	58
Eco88I	CYCGRG	1 cut(s)	559
EcoNI	CCTNNNNNAGG	1 cut(s)	394
EcoRV	GATATC	1 cut(s)	58
EcoT14I	CCWWGG	2 cut(s)	188, 305
EcoT22I	ATGCAT	1 cut(s)	89
EcoT38I	GRGCYC	1 cut(s)	403
ErhI	CCWWGG	2 cut(s)	188, 305
Esp3I	CGTCTC	1 cut(s)	2
FaeI	CATG	5 cut(s)	192, 245, 309, 350, 569
FaiI	YATR	9 cut(s)	85, 89, 118, 190, 243, 307, 348, 441, 567
FaqI	GGGAC	1 cut(s)	355
FatI	CATG	5 cut(s)	188, 241, 305, 346, 565
Fnu4HI	GCNGC	2 cut(s)	135, 508
FriOI	GRGCYC	1 cut(s)	403
Fsp4HI	GCNGC	2 cut(s)	135, 508
GluI	GCNGC	2 cut(s)	135, 508
GsaI	CCCAGC	1 cut(s)	342
HapII	CCGG	1 cut(s)	159
Hin1II	CATG	5 cut(s)	192, 245, 309, 350, 569
HincII	GTYRAC	1 cut(s)	535
HindII	GTYRAC	1 cut(s)	535
HinfI	GANTC	9 cut(s)	45, 233, 323, 343, 350, 443, 473, 547, 562
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	1 cut(s)	196
Hpy166II	GTNNAC	1 cut(s)	535
Hpy188I	TCNGA	5 cut(s)	94, 274, 416, 421, 452
Hpy188III	TCNNGA	4 cut(s)	327, 347, 356, 544
Hpy8I	GTNNAC	1 cut(s)	535
HpyAV	CCTTC	2 cut(s)	16, 256
HpyCH4III	ACNGT	2 cut(s)	225, 529
HpyCH4V	TGCA	4 cut(s)	64, 87, 210, 369
HpyF10VI	GCNNNNNNNGC	1 cut(s)	117
HpyF3I	CTNAG	1 cut(s)	395
Hsp92II	CATG	5 cut(s)	192, 245, 309, 350, 569
Kzo9I	GATC	5 cut(s)	27, 274, 278, 416, 483
LguI	GCTCTTC	1 cut(s)	206
LmnI	GCTCC	5 cut(s)	181, 298, 321, 406, 574
LpnPI	CCDG	8 cut(s)	16, 63, 172, 186, 220, 303, 324, 447
LweI	GCATC	2 cut(s)	349, 494
MalI	GATC	5 cut(s)	29, 276, 280, 418, 485
MboI	GATC	5 cut(s)	27, 274, 278, 416, 483
MboII	GAAGA	2 cut(s)	193, 532
MfeI	CAATTG	1 cut(s)	65
MhlI	GDGCHC	1 cut(s)	403
MluCI	AATT	2 cut(s)	65, 577
MlyI	GAGTC	5 cut(s)	39, 317, 337, 482, 571
MmeI	TCCRAC	2 cut(s)	428, 475
MnlI	CCTC	6 cut(s)	140, 180, 189, 280, 297, 306
Mph1103I	ATGCAT	1 cut(s)	89
MseI	TTAA	1 cut(s)	580
MspA1I	CMGCKG	2 cut(s)	137, 338
MspI	CCGG	1 cut(s)	159
MspR9I	CCNGG	1 cut(s)	160
MunI	CAATTG	1 cut(s)	65
MwoI	GCNNNNNNNGC	1 cut(s)	117
NciI	CCSGG	1 cut(s)	160
NcoI	CCATGG	2 cut(s)	188, 305
NdeII	GATC	5 cut(s)	27, 274, 278, 416, 483
NlaIII	CATG	5 cut(s)	192, 245, 309, 350, 569
NlaIV	GGNNCC	1 cut(s)	402
NsiI	ATGCAT	1 cut(s)	89
PagI	TCATGA	1 cut(s)	346
PaqCI	CACCTGC	1 cut(s)	215
PciSI	GCTCTTC	1 cut(s)	206
PfeI	GAWTC	4 cut(s)	233, 350, 443, 547
PkrI	GCNGC	2 cut(s)	136, 509
PleI	GAGTC	5 cut(s)	39, 317, 337, 481, 570
PpsI	GAGTC	5 cut(s)	39, 317, 337, 481, 570
PspFI	CCCAGC	1 cut(s)	338
PspN4I	GGNNCC	1 cut(s)	402
PvuII	CAGCTG	1 cut(s)	338
SapI	GCTCTTC	1 cut(s)	206
SaqAI	TTAA	1 cut(s)	580
SatI	GCNGC	2 cut(s)	135, 508
Sau3AI	GATC	5 cut(s)	27, 274, 278, 416, 483
SchI	GAGTC	5 cut(s)	39, 317, 337, 482, 571
ScrFI	CCNGG	1 cut(s)	160
SduI	GDGCHC	1 cut(s)	403
SetI	ASST	5 cut(s)	35, 151, 209, 340, 493
SfaNI	GCATC	2 cut(s)	349, 494
SmlI	CTYRAG	1 cut(s)	325
SmoI	CTYRAG	1 cut(s)	325
Sse9I	AATT	2 cut(s)	65, 577
SsiI	CCGC	2 cut(s)	135, 508
StyD4I	CCNGG	1 cut(s)	158
StyI	CCWWGG	2 cut(s)	188, 305
TaaI	ACNGT	2 cut(s)	225, 529
TaqI	TCGA	3 cut(s)	277, 357, 471
TasI	AATT	2 cut(s)	65, 577
TauI	GCSGC	2 cut(s)	137, 510
TfiI	GAWTC	4 cut(s)	233, 350, 443, 547
Tru1I	TTAA	1 cut(s)	580
Tru9I	TTAA	1 cut(s)	580
TspGWI	ACGGA	1 cut(s)	20
XagI	CCTNNNNNAGG	1 cut(s)	394
Zsp2I	ATGCAT	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.