Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007154.1

Orthogroup ID

OG0000142

Physical Location & Seq

Genomic Coordinates Reverse (-)

8286 .. 8678

Gene Structure 393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007154.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

atgatttttcgggacgttaacttgttgcattcgttgcccattacgtactgtactgaaggatttcgggttctcaagctggagaactgtattgctaatagttctaactgggtagaggtttctgaccttggtaaccggatgttgttcctaagcaagttcagcaaccaactcatctatgccggcaatggcgttagtggttattcccatgataggacactactcgaaagaaactgcatctgttttgctttcaattggcctggtgtcatattacctgggggagattttggggtcttttctctgacaaataagagggttatacctctgacttttccagaggatcaatgtcctgccgaactcttcgaaggaaatactgtgtggttcaaccccaatgcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010468 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030684 GO:0030686 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070545 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904 GO:2000232

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT_2 Pescadillo_N

Protein Analysis

130

Amino Acids

14.66

Weight (kDa)

5.23

Isoelectric Point (pI)

23.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000142)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica	MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica	Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis	pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis	RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata	RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora	Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa	Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha	Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana	Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	342
AcuI	CTGAAG	1 cut(s)	75
AfaI	GTAC	2 cut(s)	47, 52
AfiI	CCNNNNNNNGG	1 cut(s)	207
AgsI	TTSAA	2 cut(s)	247, 379
AjnI	CCWGG	2 cut(s)	253, 268
AloI	GAACNNNNNNTCC	2 cut(s)	51, 83
AluBI	AGCT	1 cut(s)	76
AluI	AGCT	1 cut(s)	76
AlwI	GGATC	1 cut(s)	342
AoxI	GGCC	1 cut(s)	251
Asp700I	GAANNNNTTC	1 cut(s)	60
AsuII	TTCGAA	1 cut(s)	357
BciT130I	CCWGG	2 cut(s)	255, 270
Bme1390I	CCNGG	2 cut(s)	255, 270
BmrFI	CCNGG	2 cut(s)	255, 270
BmrI	ACTGGG	1 cut(s)	115
BmsI	GCATC	1 cut(s)	240
BmuI	ACTGGG	1 cut(s)	115
BpmI	CTGGAG	1 cut(s)	98
Bpu10I	CCTNAGC	1 cut(s)	146
Bpu14I	TTCGAA	1 cut(s)	357
BpuEI	CTTGAG	1 cut(s)	56
BsaAI	YACGTR	1 cut(s)	45
BsaJI	CCNNGG	2 cut(s)	124, 269
BsaWI	WCCGGW	1 cut(s)	132
Bsc4I	CCNNNNNNNGG	1 cut(s)	207
Bse118I	RCCGGY	1 cut(s)	176
Bse1I	ACTGG	1 cut(s)	110
Bse3DI	GCAATG	1 cut(s)	187
BseBI	CCWGG	2 cut(s)	255, 270
BseDI	CCNNGG	2 cut(s)	124, 269
BseGI	GGATG	1 cut(s)	141
BseLI	CCNNNNNNNGG	1 cut(s)	207
BseMI	GCAATG	1 cut(s)	187
BseNI	ACTGG	1 cut(s)	110
BshFI	GGCC	1 cut(s)	253
BsiSI	CCGG	2 cut(s)	133, 177
BslFI	GGGAC	1 cut(s)	26
BslI	CCNNNNNNNGG	1 cut(s)	207
BsmFI	GGGAC	1 cut(s)	26
BsmI	GAATGC	1 cut(s)	28
BsnI	GGCC	1 cut(s)	253
Bsp119I	TTCGAA	1 cut(s)	357
Bsp143I	GATC	1 cut(s)	334
BspANI	GGCC	1 cut(s)	253
BspPI	GGATC	1 cut(s)	342
BspT104I	TTCGAA	1 cut(s)	357
BsrDI	GCAATG	1 cut(s)	187
BsrFI	RCCGGY	1 cut(s)	176
BsrI	ACTGG	1 cut(s)	110
BssAI	RCCGGY	1 cut(s)	176
BssECI	CCNNGG	2 cut(s)	124, 269
BssMI	GATC	1 cut(s)	334
BssT1I	CCWWGG	1 cut(s)	124
Bst2UI	CCWGG	2 cut(s)	255, 270
Bst4CI	ACNGT	3 cut(s)	50, 86, 370
Bst6I	CTCTTC	1 cut(s)	359
BstAPI	GCANNNNNTGC	1 cut(s)	34
BstBAI	YACGTR	1 cut(s)	45
BstBI	TTCGAA	1 cut(s)	357
BstC8I	GCNNGC	1 cut(s)	178
BstDEI	CTNAG	1 cut(s)	146
BstEII	GGTNACC	1 cut(s)	128
BstF5I	GGATG	1 cut(s)	141
BstKTI	GATC	1 cut(s)	337
BstMBI	GATC	1 cut(s)	334
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 156
BstNI	CCWGG	2 cut(s)	255, 270
BstPI	GGTNACC	1 cut(s)	128
BstSCI	CCNGG	2 cut(s)	253, 268
BstSNI	TACGTA	1 cut(s)	45
BsuRI	GGCC	1 cut(s)	253
BtsCI	GGATG	1 cut(s)	141
Cac8I	GCNNGC	1 cut(s)	178
Cfr10I	RCCGGY	1 cut(s)	176
Csp6I	GTAC	2 cut(s)	46, 51
CviAII	CATG	1 cut(s)	203
CviJI	RGCY	2 cut(s)	76, 253
CviKI_1	RGCY	2 cut(s)	76, 253
CviQI	GTAC	2 cut(s)	46, 51
DdeI	CTNAG	1 cut(s)	146
DpnI	GATC	1 cut(s)	336
DpnII	GATC	1 cut(s)	334
Eam1104I	CTCTTC	1 cut(s)	359
EarI	CTCTTC	1 cut(s)	359
Eco105I	TACGTA	1 cut(s)	45
Eco130I	CCWWGG	1 cut(s)	124
Eco57I	CTGAAG	1 cut(s)	75
Eco91I	GGTNACC	1 cut(s)	128
EcoO65I	GGTNACC	1 cut(s)	128
EcoRII	CCWGG	2 cut(s)	253, 268
EcoT14I	CCWWGG	1 cut(s)	124
ErhI	CCWWGG	1 cut(s)	124
FaeI	CATG	1 cut(s)	206
FaiI	YATR	4 cut(s)	174, 204, 263, 314
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	1 cut(s)	202
FokI	GGATG	1 cut(s)	148
GsuI	CTGGAG	1 cut(s)	98
HaeIII	GGCC	1 cut(s)	253
HapII	CCGG	2 cut(s)	133, 177
Hin1II	CATG	1 cut(s)	206
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HpaI	GTTAAC	1 cut(s)	19
HpaII	CCGG	2 cut(s)	133, 177
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	3 cut(s)	121, 297, 321
Hpy188III	TCNNGA	2 cut(s)	11, 329
Hpy8I	GTNNAC	1 cut(s)	19
HpyAV	CCTTC	2 cut(s)	50, 353
HpyCH4III	ACNGT	3 cut(s)	50, 86, 370
HpyCH4IV	ACGT	2 cut(s)	15, 44
HpyCH4V	TGCA	2 cut(s)	28, 231
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 156
HpyF3I	CTNAG	1 cut(s)	146
HpySE526I	ACGT	2 cut(s)	15, 44
Hsp92II	CATG	1 cut(s)	206
KroI	GCCGGC	1 cut(s)	176
KroNI	GCCGGC	1 cut(s)	178
KspAI	GTTAAC	1 cut(s)	19
Kzo9I	GATC	1 cut(s)	334
LweI	GCATC	1 cut(s)	240
MaeII	ACGT	2 cut(s)	15, 44
MaeIII	GTNAC	1 cut(s)	128
MalI	GATC	1 cut(s)	336
MboI	GATC	1 cut(s)	334
MboII	GAAGA	1 cut(s)	346
MfeI	CAATTG	1 cut(s)	247
MluCI	AATT	1 cut(s)	247
MnlI	CCTC	4 cut(s)	106, 300, 325, 327
MroNI	GCCGGC	1 cut(s)	176
MroXI	GAANNNNTTC	1 cut(s)	60
MseI	TTAA	2 cut(s)	18, 391
MspI	CCGG	2 cut(s)	133, 177
MspR9I	CCNGG	2 cut(s)	255, 270
MunI	CAATTG	1 cut(s)	247
Mva1269I	GAATGC	1 cut(s)	28
MvaI	CCWGG	2 cut(s)	255, 270
MwoI	GCNNNNNNNGC	2 cut(s)	34, 156
NaeI	GCCGGC	1 cut(s)	178
NdeII	GATC	1 cut(s)	334
NgoMIV	GCCGGC	1 cut(s)	176
NlaIII	CATG	1 cut(s)	206
NspV	TTCGAA	1 cut(s)	357
PctI	GAATGC	1 cut(s)	28
PdiI	GCCGGC	1 cut(s)	178
PdmI	GAANNNNTTC	1 cut(s)	60
Ppu21I	YACGTR	1 cut(s)	45
Psp6I	CCWGG	2 cut(s)	253, 268
PspEI	GGTNACC	1 cut(s)	128
PspGI	CCWGG	2 cut(s)	253, 268
RsaI	GTAC	2 cut(s)	47, 52
RsaNI	GTAC	2 cut(s)	46, 51
SaqAI	TTAA	2 cut(s)	18, 391
Sau3AI	GATC	1 cut(s)	334
ScrFI	CCNGG	2 cut(s)	255, 270
SetI	ASST	7 cut(s)	18, 47, 78, 117, 126, 271, 319
SfaNI	GCATC	1 cut(s)	240
SfuI	TTCGAA	1 cut(s)	357
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
SnaBI	TACGTA	1 cut(s)	45
Sse9I	AATT	1 cut(s)	247
StyD4I	CCNGG	2 cut(s)	253, 268
StyI	CCWWGG	1 cut(s)	124
TaaI	ACNGT	3 cut(s)	50, 86, 370
TaiI	ACGT	2 cut(s)	18, 47
TaqI	TCGA	2 cut(s)	219, 357
TasI	AATT	1 cut(s)	247
TatI	WGTACW	1 cut(s)	50
Tru1I	TTAA	2 cut(s)	18, 391
Tru9I	TTAA	2 cut(s)	18, 391
XmnI	GAANNNNTTC	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.