Rw2G038990

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
63982058 .. 63983047
990 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G038990.1

Sequence Viewer

Length: 990 bp
ATGCATAGGCAATTGTGTGTTGGGTCAATTGAGGGGTGGTTGATCATGCTCGACAATGTCACCTTTACTGTTGATCAAGATCATACTACCTTTAACATGTTCAACTTGTTCTTCTTGAACCCAATATCAGGTGCCAAAGTCATGTTACCACCAGAATCCACCATTCCACCCAAACTCAGCAAGATCCGTTCCTGGTTGCATAAAGTAGTAGCCTCTTCGGTACCGACAAGCCCGCACTGTCTTGTGGCTAGTCATCATTCAACTGGACGTTTGGCTTTCTGTAGACCTTCAGATAAATCATGGACCGTGATTGATGCTGATGGGGAGGTTCTTACGGGGCTTGAAGAAGAGTTTTTCGATATTGAAATAATTGACAAGAAATTATATGTTTTAGTTATGAGTGAACTGGGCTTTTTATTCGTGTTTGACATCCACTTAGATTCCAGTGCTCATACCTATACGGCTGAAAGGTTGGTTATGCTTCATCCTTGGCCAGTTATTTCCCTTCCTACGCCTGTGGTACGGGATGGAGTCATACATGCAAATGGATGTGAACACGTGACTTACATATTCAAAGATTCTACCTCAAAAGAGTTGTTTATGACTTTCATTAGTAAGAGTTATTCTTACAAGGATGGTGAGGAGTTCAGGCTATCCGTCGATGATCCTCATACAGATGGATTTCGAGTATTCAAACTAGAACACAATAATGGTCCTCGATGGATAGAAACTACCAATCTTGGTAATCGTATACTGTTCCTGAGCACGGCCAGCAGATTATTGGTCCCTTCTGTCATAGACCTTAATTATTTTGGTCCTTATGGAAAGACACAAGAAAGAAATCGCATTTATTTTGTTTTTGAAGGTGGGCATGATTTTGGTATATTTTCCTTGACAGACAAAAGCATCGAACGTTACACATTTCCTTTTCCCGAAGATCATTATTCTACTAGACGGTCTCCTATTTGGTTCACACCAAATCTTTGGTAG

Protein Analysis

329

Amino Acids

37.79

Weight (kDa)

5.9

Isoelectric Point (pI)

43.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 2 - 297 3.5e-32 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000142)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 220
AccB1I GGYRCC 2 cut(s) 131, 220
AccI GTMKAC 2 cut(s) 283, 751
AciI CCGC 1 cut(s) 233
AclI AACGTT 1 cut(s) 913
AclWI GGATC 2 cut(s) 178, 659
AcoI YGGCCR 2 cut(s) 491, 768
AcuI CTGAAG 1 cut(s) 273
AcvI CACGTG 1 cut(s) 559
AfaI GTAC 2 cut(s) 222, 522
AfiI CCNNNNNNNGG 2 cut(s) 128, 766
AflIII ACRYGT 2 cut(s) 96, 556
AgsI TTSAA 8 cut(s) 103, 118, 261, 344, 365, 574, 694, 863
AjnI CCWGG 1 cut(s) 191
Alw21I GWGCWC 2 cut(s) 451, 767
Alw26I GTCTC 1 cut(s) 963
AlwI GGATC 2 cut(s) 178, 659
AoxI GGCC 2 cut(s) 491, 768
Asp718I GGTACC 1 cut(s) 220
AspS9I GGNCC 4 cut(s) 303, 713, 784, 815
AsuHPI GGTGA 2 cut(s) 52, 650
AvaII GGWCC 4 cut(s) 303, 713, 784, 815
BalI TGGCCA 1 cut(s) 493
BanI GGYRCC 2 cut(s) 131, 220
BbrPI CACGTG 1 cut(s) 559
Bbv12I GWGCWC 2 cut(s) 451, 767
BccI CCATC 5 cut(s) 314, 521, 629, 671, 714
BceAI ACGGC 2 cut(s) 477, 783
BciT130I CCWGG 1 cut(s) 193
BclI TGATCA 2 cut(s) 42, 73
BcoDI GTCTC 1 cut(s) 963
BfaI CTAG 3 cut(s) 249, 698, 951
BfmI CTRYAG 1 cut(s) 280
Bme1390I CCNGG 1 cut(s) 193
Bme18I GGWCC 4 cut(s) 303, 713, 784, 815
BmgT120I GGNCC 4 cut(s) 303, 713, 784, 815
BmiI GGNNCC 3 cut(s) 133, 222, 786
BmrFI CCNGG 1 cut(s) 193
BmrI ACTGGG 1 cut(s) 416
BmsI GCATC 2 cut(s) 304, 915
BmuI ACTGGG 1 cut(s) 416
Bpu10I CCTNAGC 1 cut(s) 761
BsaAI YACGTR 1 cut(s) 559
BsaBI GATNNNNATC 1 cut(s) 78
BsaI GGTCTC 1 cut(s) 963
BsaJI CCNNGG 1 cut(s) 488
Bsc4I CCNNNNNNNGG 2 cut(s) 128, 766
Bse1I ACTGG 4 cut(s) 268, 411, 444, 494
Bse8I GATNNNNATC 1 cut(s) 78
BseBI CCWGG 1 cut(s) 193
BseDI CCNNGG 1 cut(s) 488
BseGI GGATG 5 cut(s) 429, 484, 532, 554, 640
BseJI GATNNNNATC 1 cut(s) 78
BseLI CCNNNNNNNGG 2 cut(s) 128, 766
BseMII CTCAG 2 cut(s) 190, 752
BseNI ACTGG 4 cut(s) 268, 411, 444, 494
BseRI GAGGAG 1 cut(s) 656
BshFI GGCC 2 cut(s) 493, 770
BshNI GGYRCC 2 cut(s) 131, 220
BsiHKAI GWGCWC 2 cut(s) 451, 767
BslFI GGGAC 1 cut(s) 770
BslI CCNNNNNNNGG 2 cut(s) 128, 766
BsmAI GTCTC 1 cut(s) 963
BsmFI GGGAC 1 cut(s) 770
BsnI GGCC 2 cut(s) 493, 770
Bso31I GGTCTC 1 cut(s) 963
Bsp1286I GDGCHC 2 cut(s) 451, 767
Bsp143I GATC 6 cut(s) 42, 73, 79, 183, 664, 937
BspACI CCGC 1 cut(s) 233
BspANI GGCC 2 cut(s) 493, 770
BspCNI CTCAG 2 cut(s) 189, 753
BspLI GGNNCC 3 cut(s) 133, 222, 786
BspPI GGATC 2 cut(s) 178, 659
BspT107I GGYRCC 2 cut(s) 131, 220
BspTNI GGTCTC 1 cut(s) 963
BsrI ACTGG 4 cut(s) 268, 411, 444, 494
BssECI CCNNGG 1 cut(s) 488
BssMI GATC 6 cut(s) 42, 73, 79, 183, 664, 937
BssNAI GTATAC 1 cut(s) 752
BssT1I CCWWGG 1 cut(s) 488
Bst1107I GTATAC 1 cut(s) 752
Bst2UI CCWGG 1 cut(s) 193
Bst4CI ACNGT 5 cut(s) 70, 239, 307, 756, 957
Bst6I CTCTTC 2 cut(s) 220, 342
BstBAI YACGTR 1 cut(s) 559
BstC8I GCNNGC 2 cut(s) 233, 772
BstDEI CTNAG 3 cut(s) 176, 436, 761
BstF5I GGATG 5 cut(s) 429, 484, 532, 554, 640
BstKTI GATC 6 cut(s) 45, 76, 82, 186, 667, 940
BstMAI GTCTC 1 cut(s) 963
BstMBI GATC 6 cut(s) 42, 73, 79, 183, 664, 937
BstMWI GCNNNNNNNGC 1 cut(s) 771
BstNI CCWGG 1 cut(s) 193
BstNSI RCATGY 2 cut(s) 100, 542
BstSCI CCNGG 1 cut(s) 191
BstSFI CTRYAG 1 cut(s) 280
BstX2I RGATCY 1 cut(s) 183
BstXI CCANNNNNNTGG 1 cut(s) 984
BstYI RGATCY 1 cut(s) 183
BstZ17I GTATAC 1 cut(s) 752
BsuRI GGCC 2 cut(s) 493, 770
BtsCI GGATG 5 cut(s) 429, 484, 532, 554, 640
BtsIMutI CAGTG 2 cut(s) 235, 451
Cac8I GCNNGC 2 cut(s) 233, 772
Cfr13I GGNCC 4 cut(s) 303, 713, 784, 815
Csp6I GTAC 2 cut(s) 221, 521
CviAII CATG 6 cut(s) 46, 97, 142, 300, 539, 872
CviQI GTAC 2 cut(s) 221, 521
DdeI CTNAG 3 cut(s) 176, 436, 761
DpnI GATC 6 cut(s) 44, 75, 81, 185, 666, 939
DpnII GATC 6 cut(s) 42, 73, 79, 183, 664, 937
EaeI YGGCCR 2 cut(s) 491, 768
Eam1104I CTCTTC 2 cut(s) 220, 342
EarI CTCTTC 2 cut(s) 220, 342
Eco130I CCWWGG 1 cut(s) 488
Eco31I GGTCTC 1 cut(s) 963
Eco47I GGWCC 4 cut(s) 303, 713, 784, 815
Eco57I CTGAAG 1 cut(s) 273
Eco72I CACGTG 1 cut(s) 559
EcoRII CCWGG 1 cut(s) 191
EcoT14I CCWWGG 1 cut(s) 488
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 488
FaeI CATG 6 cut(s) 49, 100, 145, 303, 542, 875
FaqI GGGAC 1 cut(s) 770
FatI CATG 6 cut(s) 45, 96, 141, 299, 538, 871
FauI CCCGC 1 cut(s) 240
FbaI TGATCA 2 cut(s) 42, 73
FblI GTMKAC 2 cut(s) 283, 751
FokI GGATG 5 cut(s) 416, 471, 539, 561, 647
FspBI CTAG 3 cut(s) 249, 698, 951
HaeIII GGCC 2 cut(s) 493, 770
Hin1II CATG 6 cut(s) 49, 100, 145, 303, 542, 875
HinfI GANTC 4 cut(s) 155, 440, 531, 578
HphI GGTGA 2 cut(s) 52, 650
Hpy166II GTNNAC 5 cut(s) 284, 404, 554, 752, 972
Hpy188I TCNGA 1 cut(s) 292
Hpy188III TCNNGA 4 cut(s) 77, 115, 760, 932
Hpy8I GTNNAC 5 cut(s) 284, 404, 554, 752, 972
Hpy99I CGWCG 1 cut(s) 662
HpyAV CCTTC 4 cut(s) 297, 515, 798, 857
HpyCH4III ACNGT 5 cut(s) 70, 239, 307, 756, 957
HpyCH4IV ACGT 3 cut(s) 268, 558, 913
HpyCH4V TGCA 3 cut(s) 4, 199, 542
HpyF10VI GCNNNNNNNGC 1 cut(s) 771
HpyF3I CTNAG 3 cut(s) 176, 436, 761
HpySE526I ACGT 3 cut(s) 268, 558, 913
Hsp92II CATG 6 cut(s) 49, 100, 145, 303, 542, 875
KpnI GGTACC 1 cut(s) 224
Ksp22I TGATCA 2 cut(s) 42, 73
Kzo9I GATC 6 cut(s) 42, 73, 79, 183, 664, 937
LweI GCATC 2 cut(s) 304, 915
MaeI CTAG 3 cut(s) 249, 698, 951
MaeII ACGT 3 cut(s) 268, 558, 913
MaeIII GTNAC 4 cut(s) 58, 144, 559, 914
MalI GATC 6 cut(s) 44, 75, 81, 185, 666, 939
MboI GATC 6 cut(s) 42, 73, 79, 183, 664, 937
MboII GAAGA 5 cut(s) 103, 207, 356, 359, 947
MfeI CAATTG 2 cut(s) 11, 27
MflI RGATCY 1 cut(s) 183
MhlI GDGCHC 2 cut(s) 451, 767
MlsI TGGCCA 1 cut(s) 493
MluCI AATT 5 cut(s) 11, 27, 369, 380, 805
MluNI TGGCCA 1 cut(s) 493
MlyI GAGTC 1 cut(s) 540
MnlI CCTC 7 cut(s) 25, 223, 319, 595, 634, 678, 726
Mox20I TGGCCA 1 cut(s) 493
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 493
MseI TTAA 2 cut(s) 93, 804
MslI CAYNNNNRTG 3 cut(s) 543, 675, 708
Msp20I TGGCCA 1 cut(s) 493
MspR9I CCNGG 1 cut(s) 193
MunI CAATTG 2 cut(s) 11, 27
MvaI CCWGG 1 cut(s) 193
MwoI GCNNNNNNNGC 1 cut(s) 771
NdeII GATC 6 cut(s) 42, 73, 79, 183, 664, 937
NlaIII CATG 6 cut(s) 49, 100, 145, 303, 542, 875
NlaIV GGNNCC 3 cut(s) 133, 222, 786
NmuCI GTSAC 2 cut(s) 58, 559
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 100, 542
PciI ACATGT 1 cut(s) 96
PfeI GAWTC 3 cut(s) 155, 440, 578
PflFI GACNNNGTC 1 cut(s) 56
PleI GAGTC 1 cut(s) 539
PmaCI CACGTG 1 cut(s) 559
PmlI CACGTG 1 cut(s) 559
PpsI GAGTC 1 cut(s) 539
Ppu21I YACGTR 1 cut(s) 559
PscI ACATGT 1 cut(s) 96
Psp1406I AACGTT 1 cut(s) 913
Psp6I CCWGG 1 cut(s) 191
PspCI CACGTG 1 cut(s) 559
PspGI CCWGG 1 cut(s) 191
PspN4I GGNNCC 3 cut(s) 133, 222, 786
PspPI GGNCC 4 cut(s) 303, 713, 784, 815
PsuI RGATCY 1 cut(s) 183
PsyI GACNNNGTC 1 cut(s) 56
RsaI GTAC 2 cut(s) 222, 522
RsaNI GTAC 2 cut(s) 221, 521
RseI CAYNNNNRTG 3 cut(s) 543, 675, 708
SaqAI TTAA 2 cut(s) 93, 804
Sau3AI GATC 6 cut(s) 42, 73, 79, 183, 664, 937
Sau96I GGNCC 4 cut(s) 303, 713, 784, 815
SchI GAGTC 1 cut(s) 540
ScrFI CCNGG 1 cut(s) 193
SduI GDGCHC 2 cut(s) 451, 767
SfaNI GCATC 2 cut(s) 304, 915
SfcI CTRYAG 1 cut(s) 280
SinI GGWCC 4 cut(s) 303, 713, 784, 815
SmiMI CAYNNNNRTG 3 cut(s) 543, 675, 708
Sse9I AATT 5 cut(s) 11, 27, 369, 380, 805
SsiI CCGC 1 cut(s) 233
SspMI CTAG 3 cut(s) 249, 698, 951
StyD4I CCNGG 1 cut(s) 191
StyI CCWWGG 1 cut(s) 488
TaaI ACNGT 5 cut(s) 70, 239, 307, 756, 957
TaiI ACGT 3 cut(s) 271, 561, 916
TaqI TCGA 6 cut(s) 51, 357, 660, 685, 718, 909
TasI AATT 5 cut(s) 11, 27, 369, 380, 805
TfiI GAWTC 3 cut(s) 155, 440, 578
Tru1I TTAA 2 cut(s) 93, 804
Tru9I TTAA 2 cut(s) 93, 804
TscAI CASTG 2 cut(s) 242, 451
TseFI GTSAC 2 cut(s) 58, 559
Tsp45I GTSAC 2 cut(s) 58, 559
TspDTI ATGAA 2 cut(s) 473, 598
TspGWI ACGGA 2 cut(s) 176, 646
TspRI CASTG 2 cut(s) 242, 451
Tth111I GACNNNGTC 1 cut(s) 56
VpaK11BI GGWCC 4 cut(s) 303, 713, 784, 815
XceI RCATGY 2 cut(s) 100, 542
XcmI CCANNNNNNNNNTGG 1 cut(s) 778
XmiI GTMKAC 2 cut(s) 283, 751
XspI CTAG 3 cut(s) 249, 698, 951
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.