FvH4_6g39721

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
31369529 .. 31371729
2201 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g39721.t1

Sequence Viewer

Length: 915 bp
ATGATACTTGTTGCTCCTGAATTTAGCACACTAGCATTCACTTCTGAAGATGTATTTGAAGAGGGTTGGCTGATCATGTCTGCTCTACATTCATCATATGACTTGTTCTTCTTGAACCCAGTAACAGGTACTCAGATTGTGCTCCCATCACATTCCGCAGTTACAAAGTTCTTTAAAATAAAAGCAGTAGCCTCGTCAGTACCATCGGAAACAAGGTTGAAGCCCCGGCGGTGTTACGTGTCTTGCCTTGTCTTCAAACAAAAATGTAGTTTGGCTTTCTGTGCTCCCGGTGATGAATCATGGACCTCCATTGCGGCCGAGTGGGATGATATTGCTGTAGGATTCCGGGATGTAGAAATAGTTGATGGGAAATTACATGCTGTAGGTGTACGTGCATTAGAGTTTTTGATGGTGTTTGACATCCAGTTAGATACCAATGGCTTCGGAAATCATACCTGCACAGCACAAATGTTGGTCACTCTTCATCCCAACATTGATAGCATACTTGATAACCGAGTTCACATTGATCAGCATTGTTACCTAGCAAAAGGTTCTGAATCAAAGGAGTTGTTTATGATTTTGCCTAGGCATGAATTTTACAGGACCATAGGATTTTCAAGTGTTAAGTTGGAATATAATGTTACTGGTCATAATTGGGTAGAGATTGTTAATATTGGTGATCAAGTGTTGTTTATTGGCGCCCTCAACACCAAATTTATATCTTTGGGTAGTACTACTTCTCATGATAAAACACTTGAGAGAAACTCTATCTATTTTGTAGTCAATTCGTCCAAAACATGGGAAGCTGGGGTGTTTTCTTTGACAGATAAAAGCATCAAACCTTTGATTGTTCTCAAGGATCATTTGCGTGAGGGAATAGATCGTACTGTTTGGTTCACACCAAATTCTTTGTAG

Protein Analysis

305

Amino Acids

34.15

Weight (kDa)

5.87

Isoelectric Point (pI)

27.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 21 - 272 2.8e-28 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000142)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 464
AccB1I GGYRCC 1 cut(s) 698
AccB7I CCANNNNNTGG 1 cut(s) 798
AciI CCGC 3 cut(s) 156, 229, 314
AclWI GGATC 1 cut(s) 867
AcoI YGGCCR 1 cut(s) 315
AcsI RAATTY 4 cut(s) 20, 593, 713, 904
AcuI CTGAAG 1 cut(s) 66
AcyI GRCGYC 1 cut(s) 699
AfaI GTAC 5 cut(s) 130, 201, 390, 733, 886
AfiI CCNNNNNNNGG 2 cut(s) 125, 798
AflIII ACRYGT 1 cut(s) 237
AgsI TTSAA 5 cut(s) 59, 115, 220, 256, 618
AluBI AGCT 1 cut(s) 806
AluI AGCT 1 cut(s) 806
Alw21I GWGCWC 2 cut(s) 144, 286
AlwI GGATC 1 cut(s) 867
AoxI GGCC 1 cut(s) 315
ApoI RAATTY 4 cut(s) 20, 593, 713, 904
AspA2I CCTAGG 1 cut(s) 584
AspLEI GCGC 1 cut(s) 701
AspS9I GGNCC 2 cut(s) 303, 603
AsuC2I CCSGG 3 cut(s) 226, 288, 347
AsuHPI GGTGA 2 cut(s) 302, 689
AvaII GGWCC 2 cut(s) 303, 603
AvrII CCTAGG 1 cut(s) 584
BanI GGYRCC 1 cut(s) 698
BarI GAAGNNNNNNTAC 2 cut(s) 721, 753
BbsI GAAGAC 1 cut(s) 244
Bbv12I GWGCWC 2 cut(s) 144, 286
BccI CCATC 4 cut(s) 154, 211, 359, 403
BcgI CGANNNNNNTGC 2 cut(s) 174, 208
BclI TGATCA 3 cut(s) 72, 526, 679
BcnI CCSGG 3 cut(s) 226, 288, 347
BfaI CTAG 3 cut(s) 32, 542, 585
BfmI CTRYAG 2 cut(s) 336, 381
BfoI RGCGCY 1 cut(s) 702
BfuAI ACCTGC 1 cut(s) 464
BisI GCNGC 1 cut(s) 315
BlnI CCTAGG 1 cut(s) 584
BlsI GCNGC 1 cut(s) 316
BmcAI AGTACT 1 cut(s) 733
Bme1390I CCNGG 3 cut(s) 226, 288, 347
Bme18I GGWCC 2 cut(s) 303, 603
BmgT120I GGNCC 2 cut(s) 303, 603
BmiI GGNNCC 1 cut(s) 700
BmrFI CCNGG 3 cut(s) 226, 288, 347
BmrI ACTGGG 1 cut(s) 113
BmsI GCATC 1 cut(s) 843
BmuI ACTGGG 1 cut(s) 113
BpiI GAAGAC 1 cut(s) 244
BplI GAGNNNNNCTC 2 cut(s) 749, 781
BpuEI CTTGAG 2 cut(s) 776, 839
BpuMI CCSGG 3 cut(s) 226, 288, 347
BsaAI YACGTR 2 cut(s) 238, 392
BsaHI GRCGYC 1 cut(s) 699
BsaJI CCNNGG 2 cut(s) 224, 584
Bsc4I CCNNNNNNNGG 2 cut(s) 125, 798
Bse1I ACTGG 3 cut(s) 119, 424, 649
Bse3DI GCAATG 1 cut(s) 309
BseDI CCNNGG 2 cut(s) 224, 584
BseGI GGATG 4 cut(s) 331, 355, 420, 484
BseLI CCNNNNNNNGG 2 cut(s) 125, 798
BseMI GCAATG 1 cut(s) 309
BseMII CTCAG 1 cut(s) 146
BseNI ACTGG 3 cut(s) 119, 424, 649
BseX3I CGGCCG 1 cut(s) 315
BseYI CCCAGC 1 cut(s) 806
BsgI GTGCAG 1 cut(s) 442
Bsh1285I CGRYCG 1 cut(s) 318
BshFI GGCC 1 cut(s) 317
BshNI GGYRCC 1 cut(s) 698
BsiEI CGRYCG 1 cut(s) 318
BsiHKAI GWGCWC 2 cut(s) 144, 286
BsiSI CCGG 3 cut(s) 226, 288, 346
BslI CCNNNNNNNGG 2 cut(s) 125, 798
BsmI GAATGC 1 cut(s) 35
BsnI GGCC 1 cut(s) 317
Bsp1286I GDGCHC 2 cut(s) 144, 286
Bsp143I GATC 5 cut(s) 72, 526, 679, 859, 880
BspACI CCGC 3 cut(s) 156, 229, 314
BspANI GGCC 1 cut(s) 317
BspCNI CTCAG 1 cut(s) 145
BspHI TCATGA 1 cut(s) 742
BspLI GGNNCC 1 cut(s) 700
BspMI ACCTGC 1 cut(s) 464
BspPI GGATC 1 cut(s) 867
BspT107I GGYRCC 1 cut(s) 698
BsrDI GCAATG 1 cut(s) 309
BsrI ACTGG 3 cut(s) 119, 424, 649
BssECI CCNNGG 2 cut(s) 224, 584
BssMI GATC 5 cut(s) 72, 526, 679, 859, 880
BssNI GRCGYC 1 cut(s) 699
BssT1I CCWWGG 1 cut(s) 584
Bst4CI ACNGT 1 cut(s) 889
Bst6I CTCTTC 2 cut(s) 54, 486
BstACI GRCGYC 1 cut(s) 699
BstBAI YACGTR 2 cut(s) 238, 392
BstDEI CTNAG 1 cut(s) 132
BstF5I GGATG 4 cut(s) 331, 355, 420, 484
BstH2I RGCGCY 1 cut(s) 702
BstHHI GCGC 1 cut(s) 701
BstKTI GATC 5 cut(s) 75, 529, 682, 862, 883
BstMBI GATC 5 cut(s) 72, 526, 679, 859, 880
BstMCI CGRYCG 1 cut(s) 318
BstMWI GCNNNNNNNGC 1 cut(s) 281
BstNSI RCATGY 1 cut(s) 380
BstSCI CCNGG 3 cut(s) 224, 286, 345
BstSFI CTRYAG 2 cut(s) 336, 381
BstV2I GAAGAC 1 cut(s) 244
BstZI CGGCCG 1 cut(s) 315
BsuRI GGCC 1 cut(s) 317
BtsCI GGATG 4 cut(s) 331, 355, 420, 484
BveI ACCTGC 1 cut(s) 464
CciI TCATGA 1 cut(s) 742
CfoI GCGC 1 cut(s) 701
Cfr13I GGNCC 2 cut(s) 303, 603
Csp6I GTAC 5 cut(s) 129, 200, 389, 732, 885
CviAII CATG 6 cut(s) 76, 300, 377, 590, 743, 798
CviJI RGCY 7 cut(s) 70, 191, 223, 275, 317, 441, 806
CviKI_1 RGCY 7 cut(s) 70, 191, 223, 275, 317, 441, 806
CviQI GTAC 5 cut(s) 129, 200, 389, 732, 885
DdeI CTNAG 1 cut(s) 132
DinI GGCGCC 1 cut(s) 700
DpnI GATC 5 cut(s) 74, 528, 681, 861, 882
DpnII GATC 5 cut(s) 72, 526, 679, 859, 880
DraI TTTAAA 1 cut(s) 175
EaeI YGGCCR 1 cut(s) 315
EagI CGGCCG 1 cut(s) 315
Eam1104I CTCTTC 2 cut(s) 54, 486
EarI CTCTTC 2 cut(s) 54, 486
EclXI CGGCCG 1 cut(s) 315
Eco130I CCWWGG 1 cut(s) 584
Eco47I GGWCC 2 cut(s) 303, 603
Eco52I CGGCCG 1 cut(s) 315
Eco57I CTGAAG 1 cut(s) 66
EcoT14I CCWWGG 1 cut(s) 584
EgeI GGCGCC 1 cut(s) 700
EheI GGCGCC 1 cut(s) 700
ErhI CCWWGG 1 cut(s) 584
FaeI CATG 6 cut(s) 79, 303, 380, 593, 746, 801
FatI CATG 6 cut(s) 75, 299, 376, 589, 742, 797
FauNDI CATATG 1 cut(s) 97
FbaI TGATCA 3 cut(s) 72, 526, 679
Fnu4HI GCNGC 1 cut(s) 315
FokI GGATG 4 cut(s) 338, 362, 407, 471
Fsp4HI GCNGC 1 cut(s) 315
FspBI CTAG 3 cut(s) 32, 542, 585
GlaI GCGC 1 cut(s) 700
GluI GCNGC 1 cut(s) 315
GsaI CCCAGC 1 cut(s) 810
HaeII RGCGCY 1 cut(s) 702
HaeIII GGCC 1 cut(s) 317
HapII CCGG 3 cut(s) 226, 288, 346
HhaI GCGC 1 cut(s) 701
Hin1I GRCGYC 1 cut(s) 699
Hin1II CATG 6 cut(s) 79, 303, 380, 593, 746, 801
Hin6I GCGC 1 cut(s) 699
HinP1I GCGC 1 cut(s) 699
HinfI GANTC 3 cut(s) 296, 342, 557
HpaII CCGG 3 cut(s) 226, 288, 346
HphI GGTGA 2 cut(s) 302, 689
Hpy166II GTNNAC 3 cut(s) 389, 520, 897
Hpy188I TCNGA 5 cut(s) 46, 135, 208, 446, 556
Hpy188III TCNNGA 3 cut(s) 17, 112, 743
Hpy8I GTNNAC 3 cut(s) 389, 520, 897
HpyCH4III ACNGT 1 cut(s) 889
HpyCH4IV ACGT 2 cut(s) 237, 391
HpyCH4V TGCA 2 cut(s) 395, 459
HpyF10VI GCNNNNNNNGC 1 cut(s) 281
HpyF3I CTNAG 1 cut(s) 132
HpySE526I ACGT 2 cut(s) 237, 391
Hsp92I GRCGYC 1 cut(s) 699
Hsp92II CATG 6 cut(s) 79, 303, 380, 593, 746, 801
HspAI GCGC 1 cut(s) 699
KasI GGCGCC 1 cut(s) 698
Ksp22I TGATCA 3 cut(s) 72, 526, 679
Kzo9I GATC 5 cut(s) 72, 526, 679, 859, 880
LmnI GCTCC 3 cut(s) 19, 147, 289
LweI GCATC 1 cut(s) 843
MaeI CTAG 3 cut(s) 32, 542, 585
MaeII ACGT 2 cut(s) 237, 391
MaeIII GTNAC 6 cut(s) 121, 160, 233, 475, 536, 640
MalI GATC 5 cut(s) 74, 528, 681, 861, 882
MboI GATC 5 cut(s) 72, 526, 679, 859, 880
MboII GAAGA 5 cut(s) 59, 71, 100, 244, 473
MhlI GDGCHC 2 cut(s) 144, 286
MluCI AATT 7 cut(s) 20, 371, 593, 652, 713, 784, 904
Mly113I GGCGCC 1 cut(s) 699
MmeI TCCRAC 1 cut(s) 609
MnlI CCTC 5 cut(s) 55, 202, 316, 713, 865
MseI TTAA 3 cut(s) 174, 624, 669
MslI CAYNNNNRTG 1 cut(s) 867
MspI CCGG 3 cut(s) 226, 288, 346
MspR9I CCNGG 3 cut(s) 226, 288, 347
Mva1269I GAATGC 1 cut(s) 35
MwoI GCNNNNNNNGC 1 cut(s) 281
NarI GGCGCC 1 cut(s) 699
NciI CCSGG 3 cut(s) 226, 288, 347
NdeI CATATG 1 cut(s) 97
NdeII GATC 5 cut(s) 72, 526, 679, 859, 880
NlaIII CATG 6 cut(s) 79, 303, 380, 593, 746, 801
NlaIV GGNNCC 1 cut(s) 700
NmeAIII GCCGAG 1 cut(s) 343
NmuCI GTSAC 1 cut(s) 475
NspI RCATGY 1 cut(s) 380
PagI TCATGA 1 cut(s) 742
PctI GAATGC 1 cut(s) 35
PfeI GAWTC 3 cut(s) 296, 342, 557
PflMI CCANNNNNTGG 1 cut(s) 798
PfoI TCCNGGA 1 cut(s) 345
PkrI GCNGC 1 cut(s) 316
PluTI GGCGCC 1 cut(s) 702
Ppu21I YACGTR 2 cut(s) 238, 392
PspFI CCCAGC 1 cut(s) 806
PspN4I GGNNCC 1 cut(s) 700
PspPI GGNCC 2 cut(s) 303, 603
RsaI GTAC 5 cut(s) 130, 201, 390, 733, 886
RsaNI GTAC 5 cut(s) 129, 200, 389, 732, 885
RseI CAYNNNNRTG 1 cut(s) 867
SaqAI TTAA 3 cut(s) 174, 624, 669
SatI GCNGC 1 cut(s) 315
Sau3AI GATC 5 cut(s) 72, 526, 679, 859, 880
Sau96I GGNCC 2 cut(s) 303, 603
ScaI AGTACT 1 cut(s) 733
ScrFI CCNGG 3 cut(s) 226, 288, 347
SduI GDGCHC 2 cut(s) 144, 286
SfaNI GCATC 1 cut(s) 843
SfcI CTRYAG 2 cut(s) 336, 381
SfoI GGCGCC 1 cut(s) 700
SinI GGWCC 2 cut(s) 303, 603
SmiMI CAYNNNNRTG 1 cut(s) 867
SmlI CTYRAG 2 cut(s) 755, 854
SmoI CTYRAG 2 cut(s) 755, 854
Sse9I AATT 7 cut(s) 20, 371, 593, 652, 713, 784, 904
SsiI CCGC 3 cut(s) 156, 229, 314
SspDI GGCGCC 1 cut(s) 698
SspI AATATT 1 cut(s) 673
SspMI CTAG 3 cut(s) 32, 542, 585
StyD4I CCNGG 3 cut(s) 224, 286, 345
StyI CCWWGG 1 cut(s) 584
TaaI ACNGT 1 cut(s) 889
TaiI ACGT 2 cut(s) 240, 394
TasI AATT 7 cut(s) 20, 371, 593, 652, 713, 784, 904
TatI WGTACW 1 cut(s) 731
TauI GCSGC 1 cut(s) 317
TfiI GAWTC 3 cut(s) 296, 342, 557
Tru1I TTAA 3 cut(s) 174, 624, 669
Tru9I TTAA 3 cut(s) 174, 624, 669
TseFI GTSAC 1 cut(s) 475
Tsp45I GTSAC 1 cut(s) 475
TspDTI ATGAA 4 cut(s) 81, 309, 473, 606
Van91I CCANNNNNTGG 1 cut(s) 798
VpaK11BI GGWCC 2 cut(s) 303, 603
XapI RAATTY 4 cut(s) 20, 593, 713, 904
XceI RCATGY 1 cut(s) 380
XmaJI CCTAGG 1 cut(s) 584
XspI CTAG 3 cut(s) 32, 542, 585
ZrmI AGTACT 1 cut(s) 733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.