FvH4_6g37591

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
29606470 .. 29607678
1209 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g37591.t1

Sequence Viewer

Length: 1209 bp
ATGGCAGGGAAAACTTGTGAGAACGCAACGACGAAGGAATGTGGGAGCATCAGGTGGTCCGAACAACTCCCAGACGAGATCATGCATTTGTTTCTGGAACGACTATGCATATCAGACTATCTTCATTGTCGTCAGGTTTGCCGTTCATGGCGAAACGCTGTAAGAAGAGCAACTGCCAGCAAATGTTGCCGTCCTGCTGTGGAGCTGCCATGGCTTGTGCCCGATGGCAAATACGGTTTCAATTTAAGTAACAAGAAGATTGTCAAAGGAAAGCCGAAATCACGTCTATATCAGACGAAGATATGGCAGTATTGTGTTGGGTCAATTGAGGGGTGGTTGATCGTGGTTAAGCACATAGATGGCGAACATAACAATATAAGCTTCTTGAATCCAGTATCAAGAGCCCGAGTGATGCTACCACCAAGGAGTATTGATATTGGATTCTTCTATAGGAAAGTAGTAGCCTCTACAGCACCAACGAGCTCGCAGTGTATTGTGGCTTGCATTTGTTGGGAGGAAAAGTTGGCTTTTTGTAGACCATCTGATAAATCTTGGACGAAAATTGATTCGTGGACTAGTTTTTCAGATCTAGAGATAGTTGAAAGGAAGTTATATGCTACAACAAATAACAAGTTCATGATGATGTTTGACATAATAATCGAAGATGCGGATGGCAGCGACAGCGGCGGCGGCGGCAGTCAACTCAGTTATAGGGCTGAATGGCAAGTCTCGCTTCATCCCCAACCATACATATTGTTCAATGGGATCAGATGGACGGATATCTATTCGGCTTTCGACTACTACTTAGCAAAAGATTCTACATCAGAGGAGTTGTTTATGATTACATGGAGTGCTTTAACTGCTTTTGCTCGCAATAGCTCCAACTTTGAAAGACGAAAAACTATGGAAGGAATTAGAGTGTTCAAGCTAGAGAGGATTAATAATGGTGCTCAATGGGCAGAGGTTGTCGATCTTGGTGCTCGGATATTGTTCTTAAGCAAAAAAAGCAATGCGTTCATCTACGTCGACAGCAGCAGTGATACTAAAGCAGTAGTTGAAAGAAACTGCATTTGTTTTGCTCGTGATGATCATCTGGGCTCAACCTTGGAAGTGTTTTCCTTGACAGACAAGAGTATCAAACCTTATGATACTCCCCCCGTAAAGGCTAATTCATCGGAGTCATTTTGGTTCACACCAAATCCTTGGTAG

Protein Analysis

403

Amino Acids

45.99

Weight (kDa)

8.55

Isoelectric Point (pI)

39.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 21 - 55 8.5e-08 F-box-like
F-box PF00646 22 - 56 7.6e-09 F-box domain
Beta-prop_KIB1-4 PF03478 94 - 375 2e-36 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000142)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 535, 1026
AciI CCGC 5 cut(s) 668, 684, 687, 690, 693
AclWI GGATC 1 cut(s) 773
AfiI CCNNNNNNNGG 1 cut(s) 1162
AflII CTTAAG 1 cut(s) 994
AgsI TTSAA 7 cut(s) 241, 388, 602, 760, 890, 925, 1058
AhlI ACTAGT 1 cut(s) 575
AjiI CACGTC 1 cut(s) 284
AluBI AGCT 5 cut(s) 205, 381, 483, 879, 928
AluI AGCT 5 cut(s) 205, 381, 483, 879, 928
Alw21I GWGCWC 3 cut(s) 485, 952, 982
Alw26I GTCTC 1 cut(s) 733
AlwI GGATC 1 cut(s) 773
Ama87I CYCGRG 1 cut(s) 405
ApeKI GCWGC 3 cut(s) 205, 675, 1032
AseI ATTAAT 1 cut(s) 939
AspS9I GGNCC 1 cut(s) 57
AvaI CYCGRG 1 cut(s) 405
AvaII GGWCC 1 cut(s) 57
BaeGI GKGCMC 1 cut(s) 222
BaeI ACNNNNGTAYC 2 cut(s) 1117, 1150
BanII GRGCYC 3 cut(s) 406, 485, 1100
BauI CACGAG 1 cut(s) 1080
Bbv12I GWGCWC 3 cut(s) 485, 952, 982
BbvI GCAGC 3 cut(s) 192, 687, 1044
BccI CCATC 5 cut(s) 218, 353, 547, 665, 765
BceAI ACGGC 2 cut(s) 126, 174
BcgI CGANNNNNNTGC 2 cut(s) 959, 993
BclI TGATCA 1 cut(s) 1087
BcoDI GTCTC 1 cut(s) 733
BcuI ACTAGT 1 cut(s) 575
BfaI CTAG 3 cut(s) 576, 590, 929
BfmI CTRYAG 2 cut(s) 448, 468
BfrI CTTAAG 1 cut(s) 994
BglII AGATCT 1 cut(s) 586
BisI GCNGC 7 cut(s) 206, 676, 685, 688, 691, 694, 1033
BlsI GCNGC 7 cut(s) 207, 677, 686, 689, 692, 695, 1034
Bme18I GGWCC 1 cut(s) 57
BmeT110I CYCGRG 1 cut(s) 405
BmgBI CACGTC 1 cut(s) 284
BmgT120I GGNCC 1 cut(s) 57
BmsI GCATC 3 cut(s) 57, 402, 655
BsaBI GATNNNNATC 1 cut(s) 1089
BsaJI CCNNGG 4 cut(s) 209, 422, 1104, 1202
BsaXI ACNNNNNCTCC 2 cut(s) 506, 536
Bsc4I CCNNNNNNNGG 1 cut(s) 1162
Bse1I ACTGG 1 cut(s) 392
Bse3DI GCAATG 1 cut(s) 1015
Bse8I GATNNNNATC 1 cut(s) 1089
BseDI CCNNGG 4 cut(s) 209, 422, 1104, 1202
BseGI GGATG 2 cut(s) 676, 736
BseJI GATNNNNATC 1 cut(s) 1089
BseLI CCNNNNNNNGG 1 cut(s) 1162
BseMI GCAATG 1 cut(s) 1015
BseMII CTCAG 1 cut(s) 718
BseNI ACTGG 1 cut(s) 392
BseRI GAGGAG 1 cut(s) 842
BseSI GKGCMC 1 cut(s) 222
BseXI GCAGC 3 cut(s) 192, 687, 1044
BsiHKAI GWGCWC 3 cut(s) 485, 952, 982
BsiHKCI CYCGRG 1 cut(s) 405
BslI CCNNNNNNNGG 1 cut(s) 1162
BsmAI GTCTC 1 cut(s) 733
BsoBI CYCGRG 1 cut(s) 405
Bsp1286I GDGCHC 6 cut(s) 222, 406, 485, 952, 982, 1100
Bsp143I GATC 6 cut(s) 78, 339, 586, 765, 970, 1087
Bsp19I CCATGG 1 cut(s) 209
BspACI CCGC 5 cut(s) 668, 684, 687, 690, 693
BspCNI CTCAG 1 cut(s) 717
BspHI TCATGA 1 cut(s) 636
BspPI GGATC 1 cut(s) 773
BspQI GCTCTTC 1 cut(s) 160
BspTI CTTAAG 1 cut(s) 994
BsrDI GCAATG 1 cut(s) 1015
BsrI ACTGG 1 cut(s) 392
BssECI CCNNGG 4 cut(s) 209, 422, 1104, 1202
BssMI GATC 6 cut(s) 78, 339, 586, 765, 970, 1087
BssSI CACGAG 1 cut(s) 1080
BssT1I CCWWGG 4 cut(s) 209, 422, 1104, 1202
Bst2BI CACGAG 1 cut(s) 1080
Bst4CI ACNGT 1 cut(s) 236
Bst6I CTCTTC 1 cut(s) 160
BstAFI CTTAAG 1 cut(s) 994
BstAPI GCANNNNNTGC 1 cut(s) 186
BstC8I GCNNGC 4 cut(s) 178, 485, 502, 871
BstDEI CTNAG 2 cut(s) 704, 805
BstDSI CCRYGG 1 cut(s) 209
BstF5I GGATG 2 cut(s) 676, 736
BstKTI GATC 6 cut(s) 81, 342, 589, 768, 973, 1090
BstMAI GTCTC 1 cut(s) 733
BstMBI GATC 6 cut(s) 78, 339, 586, 765, 970, 1087
BstSFI CTRYAG 2 cut(s) 448, 468
BstSLI GKGCMC 1 cut(s) 222
BstV1I GCAGC 3 cut(s) 192, 687, 1044
BstX2I RGATCY 1 cut(s) 586
BstXI CCANNNNNNTGG 1 cut(s) 1203
BstYI RGATCY 1 cut(s) 586
BtgI CCRYGG 1 cut(s) 209
BtrI CACGTC 1 cut(s) 284
BtsCI GGATG 2 cut(s) 676, 736
BtsI GCAGTG 2 cut(s) 494, 1042
BtsIMutI CAGTG 2 cut(s) 494, 1042
Cac8I GCNNGC 4 cut(s) 178, 485, 502, 871
CciI TCATGA 1 cut(s) 636
Cfr13I GGNCC 1 cut(s) 57
CviAII CATG 5 cut(s) 82, 147, 210, 637, 846
DdeI CTNAG 2 cut(s) 704, 805
DpnI GATC 6 cut(s) 80, 341, 588, 767, 972, 1089
DpnII GATC 6 cut(s) 78, 339, 586, 765, 970, 1087
Eam1104I CTCTTC 1 cut(s) 160
EarI CTCTTC 1 cut(s) 160
Ecl136II GAGCTC 1 cut(s) 483
Eco130I CCWWGG 4 cut(s) 209, 422, 1104, 1202
Eco24I GRGCYC 3 cut(s) 406, 485, 1100
Eco32I GATATC 1 cut(s) 781
Eco47I GGWCC 1 cut(s) 57
Eco53kI GAGCTC 1 cut(s) 483
Eco88I CYCGRG 1 cut(s) 405
EcoICRI GAGCTC 1 cut(s) 483
EcoRV GATATC 1 cut(s) 781
EcoT14I CCWWGG 4 cut(s) 209, 422, 1104, 1202
EcoT22I ATGCAT 2 cut(s) 87, 110
EcoT38I GRGCYC 3 cut(s) 406, 485, 1100
ErhI CCWWGG 4 cut(s) 209, 422, 1104, 1202
FaeI CATG 5 cut(s) 85, 150, 213, 640, 849
FalI AAGNNNNNCTT 2 cut(s) 717, 749
FatI CATG 5 cut(s) 81, 146, 209, 636, 845
FbaI TGATCA 1 cut(s) 1087
FblI GTMKAC 2 cut(s) 535, 1026
Fnu4HI GCNGC 7 cut(s) 206, 676, 685, 688, 691, 694, 1033
FokI GGATG 2 cut(s) 683, 723
FriOI GRGCYC 3 cut(s) 406, 485, 1100
Fsp4HI GCNGC 7 cut(s) 206, 676, 685, 688, 691, 694, 1033
FspBI CTAG 3 cut(s) 576, 590, 929
GluI GCNGC 7 cut(s) 206, 676, 685, 688, 691, 694, 1033
Hin1II CATG 5 cut(s) 85, 150, 213, 640, 849
HincII GTYRAC 2 cut(s) 701, 1027
HindII GTYRAC 2 cut(s) 701, 1027
HindIII AAGCTT 1 cut(s) 379
HinfI GANTC 5 cut(s) 388, 441, 566, 815, 1178
Hpy166II GTNNAC 5 cut(s) 536, 573, 701, 1027, 1191
Hpy188I TCNGA 9 cut(s) 61, 115, 294, 544, 586, 770, 826, 984, 1177
Hpy188III TCNNGA 6 cut(s) 95, 385, 399, 590, 637, 1082
Hpy8I GTNNAC 5 cut(s) 536, 573, 701, 1027, 1191
Hpy99I CGWCG 2 cut(s) 34, 1028
HpyAV CCTTC 2 cut(s) 28, 902
HpyCH4III ACNGT 1 cut(s) 236
HpyCH4IV ACGT 2 cut(s) 283, 1023
HpyCH4V TGCA 4 cut(s) 85, 108, 504, 1068
HpyF3I CTNAG 2 cut(s) 704, 805
HpySE526I ACGT 2 cut(s) 283, 1023
Hsp92II CATG 5 cut(s) 85, 150, 213, 640, 849
Ksp22I TGATCA 1 cut(s) 1087
Kzo9I GATC 6 cut(s) 78, 339, 586, 765, 970, 1087
LguI GCTCTTC 1 cut(s) 160
LmnI GCTCC 3 cut(s) 45, 202, 884
LpnPI CCDG 8 cut(s) 37, 80, 84, 119, 190, 207, 405, 1079
Lsp1109I GCAGC 3 cut(s) 192, 687, 1044
LweI GCATC 3 cut(s) 57, 402, 655
MaeI CTAG 3 cut(s) 576, 590, 929
MaeII ACGT 2 cut(s) 283, 1023
MaeIII GTNAC 1 cut(s) 248
MalI GATC 6 cut(s) 80, 341, 588, 767, 972, 1089
MboI GATC 6 cut(s) 78, 339, 586, 765, 970, 1087
MboII GAAGA 6 cut(s) 113, 177, 268, 310, 436, 674
MfeI CAATTG 1 cut(s) 324
MflI RGATCY 1 cut(s) 586
MhlI GDGCHC 6 cut(s) 222, 406, 485, 952, 982, 1100
MluCI AATT 5 cut(s) 241, 324, 561, 912, 1168
MlyI GAGTC 1 cut(s) 1187
MmeI TCCRAC 1 cut(s) 906
MnlI CCTC 6 cut(s) 322, 475, 508, 820, 927, 955
Mph1103I ATGCAT 2 cut(s) 87, 110
MseI TTAA 5 cut(s) 245, 348, 857, 939, 995
MslI CAYNNNNRTG 2 cut(s) 357, 641
MspA1I CMGCKG 1 cut(s) 684
MspCI CTTAAG 1 cut(s) 994
MunI CAATTG 1 cut(s) 324
NcoI CCATGG 1 cut(s) 209
NdeII GATC 6 cut(s) 78, 339, 586, 765, 970, 1087
NlaIII CATG 5 cut(s) 85, 150, 213, 640, 849
NsiI ATGCAT 2 cut(s) 87, 110
PagI TCATGA 1 cut(s) 636
PciSI GCTCTTC 1 cut(s) 160
PfeI GAWTC 4 cut(s) 388, 441, 566, 815
PkrI GCNGC 7 cut(s) 207, 677, 686, 689, 692, 695, 1034
PleI GAGTC 1 cut(s) 1186
PpsI GAGTC 1 cut(s) 1186
PshBI ATTAAT 1 cut(s) 939
Psp124BI GAGCTC 1 cut(s) 485
PspPI GGNCC 1 cut(s) 57
PsuI RGATCY 1 cut(s) 586
RseI CAYNNNNRTG 2 cut(s) 357, 641
SacI GAGCTC 1 cut(s) 485
SalI GTCGAC 1 cut(s) 1025
SapI GCTCTTC 1 cut(s) 160
SaqAI TTAA 5 cut(s) 245, 348, 857, 939, 995
SatI GCNGC 7 cut(s) 206, 676, 685, 688, 691, 694, 1033
Sau3AI GATC 6 cut(s) 78, 339, 586, 765, 970, 1087
Sau96I GGNCC 1 cut(s) 57
SchI GAGTC 1 cut(s) 1187
SduI GDGCHC 6 cut(s) 222, 406, 485, 952, 982, 1100
SfaNI GCATC 3 cut(s) 57, 402, 655
SfcI CTRYAG 2 cut(s) 448, 468
SinI GGWCC 1 cut(s) 57
SmiMI CAYNNNNRTG 2 cut(s) 357, 641
SmlI CTYRAG 1 cut(s) 994
SmoI CTYRAG 1 cut(s) 994
SpeI ACTAGT 1 cut(s) 575
Sse9I AATT 5 cut(s) 241, 324, 561, 912, 1168
SsiI CCGC 5 cut(s) 668, 684, 687, 690, 693
SspMI CTAG 3 cut(s) 576, 590, 929
SstI GAGCTC 1 cut(s) 485
StyI CCWWGG 4 cut(s) 209, 422, 1104, 1202
TaaI ACNGT 1 cut(s) 236
TaiI ACGT 2 cut(s) 286, 1026
TaqI TCGA 4 cut(s) 660, 795, 969, 1026
TasI AATT 5 cut(s) 241, 324, 561, 912, 1168
TauI GCSGC 4 cut(s) 687, 690, 693, 696
TfiI GAWTC 4 cut(s) 388, 441, 566, 815
Tru1I TTAA 5 cut(s) 245, 348, 857, 939, 995
Tru9I TTAA 5 cut(s) 245, 348, 857, 939, 995
TscAI CASTG 2 cut(s) 494, 1042
TseI GCWGC 3 cut(s) 205, 675, 1032
TspDTI ATGAA 6 cut(s) 113, 135, 625, 725, 1006, 1161
TspGWI ACGGA 1 cut(s) 791
TspRI CASTG 2 cut(s) 494, 1042
Vha464I CTTAAG 1 cut(s) 994
VpaK11BI GGWCC 1 cut(s) 57
VspI ATTAAT 1 cut(s) 939
XbaI TCTAGA 1 cut(s) 589
XmiI GTMKAC 2 cut(s) 535, 1026
XspI CTAG 3 cut(s) 576, 590, 929
Zsp2I ATGCAT 2 cut(s) 87, 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.