RLG00000035157

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000142
Physical Location & Seq
Forward (+)
61909671 .. 61910147
477 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035157

Sequence Viewer

Length: 477 bp
ATGGTTGATTGTGCTCTATGGCGTCCGGAGGGTTTTATGAAGCCTTGGTCGCTCTACTTACAAAGCAATTCGATTCCTATTGATTACTTCTTCTTGAATCCAATATCAGGTGCTACAGTGATGCTCCCATCTTCACCATCGACACTTCCGTGCAATTGCAACAATATGCCTCTCTTCTTGATCAGGAAAGTAGTCGCCTCTTCAGTACCCACAAGTCAGCATTGTTTTGTAGCTAGCCTTTGCATGAGCGGTCATTTGGCTTTCTGCAGGCCAGTGGATATGTTGTGGACTGTTATTGTTCAAGGGGAGGCCACAAATCTCTTTTTTGAAGATGTAGAAATATTTAATGGTAAGTTGTATGCTGCCACTTGGGAGGCATCCAACTTTTTAATGGTATTTGACATCCAATATGCCAATGGCATTCCTAGCTACACGACTGAAAGGCTGGTTATGCTTCATCCCAATCCGGGTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295

Protein Analysis

159

Amino Acids

17.71

Weight (kDa)

5.15

Isoelectric Point (pI)

36.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 26 - 139 8.2e-15 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000142)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 249
AccIII TCCGGA 1 cut(s) 25
AciI CCGC 1 cut(s) 249
AcuI CTGAAG 1 cut(s) 186
AcyI GRCGYC 1 cut(s) 22
AfaI GTAC 1 cut(s) 207
AfiI CCNNNNNNNGG 2 cut(s) 107, 467
AgsI TTSAA 3 cut(s) 97, 302, 329
AleI CACNNNNGTG 1 cut(s) 148
AluBI AGCT 2 cut(s) 233, 429
AluI AGCT 2 cut(s) 233, 429
Alw21I GWGCWC 1 cut(s) 16
Aor13HI TCCGGA 1 cut(s) 25
AoxI GGCC 2 cut(s) 269, 309
ApeKI GCWGC 1 cut(s) 362
AsuC2I CCSGG 1 cut(s) 468
AsuHPI GGTGA 1 cut(s) 126
AsuNHI GCTAGC 1 cut(s) 233
Bbv12I GWGCWC 1 cut(s) 16
BbvI GCAGC 1 cut(s) 349
BccI CCATC 2 cut(s) 136, 145
BclI TGATCA 1 cut(s) 180
BcnI CCSGG 1 cut(s) 468
BfaI CTAG 2 cut(s) 234, 426
BfmI CTRYAG 2 cut(s) 114, 265
BisI GCNGC 1 cut(s) 363
BlsI GCNGC 1 cut(s) 364
Bme1390I CCNGG 1 cut(s) 468
BmrFI CCNGG 1 cut(s) 468
BmsI GCATC 2 cut(s) 111, 386
BmtI GCTAGC 1 cut(s) 237
BpuMI CCSGG 1 cut(s) 468
BsaHI GRCGYC 1 cut(s) 22
BsaJI CCNNGG 1 cut(s) 44
BsaWI WCCGGW 1 cut(s) 25
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 467
Bse1I ACTGG 1 cut(s) 272
BseAI TCCGGA 1 cut(s) 25
BseDI CCNNGG 1 cut(s) 44
BseGI GGATG 3 cut(s) 377, 402, 457
BseLI CCNNNNNNNGG 2 cut(s) 107, 467
BseNI ACTGG 1 cut(s) 272
BseXI GCAGC 1 cut(s) 349
BshFI GGCC 2 cut(s) 271, 311
BsiHKAI GWGCWC 1 cut(s) 16
BsiSI CCGG 2 cut(s) 26, 467
BslI CCNNNNNNNGG 2 cut(s) 107, 467
BsmI GAATGC 1 cut(s) 420
BsnI GGCC 2 cut(s) 271, 311
Bsp1286I GDGCHC 1 cut(s) 16
Bsp13I TCCGGA 1 cut(s) 25
Bsp143I GATC 1 cut(s) 180
BspACI CCGC 1 cut(s) 249
BspANI GGCC 2 cut(s) 271, 311
BspEI TCCGGA 1 cut(s) 25
BspMAI CTGCAG 1 cut(s) 269
BspOI GCTAGC 1 cut(s) 237
BsrBI CCGCTC 1 cut(s) 249
BsrI ACTGG 1 cut(s) 272
BssECI CCNNGG 1 cut(s) 44
BssMI GATC 1 cut(s) 180
BssNI GRCGYC 1 cut(s) 22
BssT1I CCWWGG 1 cut(s) 44
Bst4CI ACNGT 2 cut(s) 118, 292
Bst6I CTCTTC 2 cut(s) 179, 205
BstACI GRCGYC 1 cut(s) 22
BstC8I GCNNGC 2 cut(s) 235, 269
BstF5I GGATG 3 cut(s) 377, 402, 457
BstKTI GATC 1 cut(s) 183
BstMBI GATC 1 cut(s) 180
BstMWI GCNNNNNNNGC 3 cut(s) 49, 426, 451
BstSCI CCNGG 1 cut(s) 466
BstSFI CTRYAG 2 cut(s) 114, 265
BstV1I GCAGC 1 cut(s) 349
BsuRI GGCC 2 cut(s) 271, 311
BtsCI GGATG 3 cut(s) 377, 402, 457
BtsIMutI CAGTG 2 cut(s) 123, 279
Cac8I GCNNGC 2 cut(s) 235, 269
CseI GACGC 1 cut(s) 11
Csp6I GTAC 1 cut(s) 206
CviAII CATG 1 cut(s) 244
CviJI RGCY 8 cut(s) 43, 233, 237, 260, 271, 311, 429, 445
CviKI_1 RGCY 8 cut(s) 43, 233, 237, 260, 271, 311, 429, 445
CviQI GTAC 1 cut(s) 206
DpnI GATC 1 cut(s) 182
DpnII GATC 1 cut(s) 180
Eam1104I CTCTTC 2 cut(s) 179, 205
EarI CTCTTC 2 cut(s) 179, 205
Eco130I CCWWGG 1 cut(s) 44
Eco57I CTGAAG 1 cut(s) 186
EcoT14I CCWWGG 1 cut(s) 44
ErhI CCWWGG 1 cut(s) 44
FaeI CATG 1 cut(s) 247
FaiI YATR 8 cut(s) 19, 38, 167, 245, 281, 360, 411, 452
FatI CATG 1 cut(s) 243
FbaI TGATCA 1 cut(s) 180
Fnu4HI GCNGC 1 cut(s) 363
FokI GGATG 3 cut(s) 364, 389, 444
Fsp4HI GCNGC 1 cut(s) 363
FspBI CTAG 2 cut(s) 234, 426
GluI GCNGC 1 cut(s) 363
HaeIII GGCC 2 cut(s) 271, 311
HapII CCGG 2 cut(s) 26, 467
HgaI GACGC 1 cut(s) 11
Hin1I GRCGYC 1 cut(s) 22
Hin1II CATG 1 cut(s) 247
HinfI GANTC 2 cut(s) 73, 97
HpaII CCGG 2 cut(s) 26, 467
HphI GGTGA 1 cut(s) 126
Hpy166II GTNNAC 1 cut(s) 288
Hpy188III TCNNGA 4 cut(s) 26, 94, 178, 184
Hpy8I GTNNAC 1 cut(s) 288
HpyCH4III ACNGT 2 cut(s) 118, 292
HpyCH4V TGCA 4 cut(s) 153, 159, 243, 267
HpyF10VI GCNNNNNNNGC 3 cut(s) 49, 426, 451
Hsp92I GRCGYC 1 cut(s) 22
Hsp92II CATG 1 cut(s) 247
Kpn2I TCCGGA 1 cut(s) 25
Ksp22I TGATCA 1 cut(s) 180
Kzo9I GATC 1 cut(s) 180
LmnI GCTCC 1 cut(s) 129
LpnPI CCDG 6 cut(s) 39, 93, 169, 253, 285, 431
Lsp1109I GCAGC 1 cut(s) 349
LweI GCATC 2 cut(s) 111, 386
MaeI CTAG 2 cut(s) 234, 426
MalI GATC 1 cut(s) 182
MbiI CCGCTC 1 cut(s) 249
MboI GATC 1 cut(s) 180
MboII GAAGA 5 cut(s) 82, 123, 166, 192, 341
MfeI CAATTG 1 cut(s) 154
MhlI GDGCHC 1 cut(s) 16
MluCI AATT 2 cut(s) 67, 154
MmeI TCCRAC 1 cut(s) 405
MnlI CCTC 5 cut(s) 22, 180, 208, 301, 367
MroI TCCGGA 1 cut(s) 25
MseI TTAA 2 cut(s) 345, 389
MslI CAYNNNNRTG 1 cut(s) 148
MspI CCGG 2 cut(s) 26, 467
MspR9I CCNGG 1 cut(s) 468
MunI CAATTG 1 cut(s) 154
Mva1269I GAATGC 1 cut(s) 420
MwoI GCNNNNNNNGC 3 cut(s) 49, 426, 451
NciI CCSGG 1 cut(s) 468
NdeII GATC 1 cut(s) 180
NheI GCTAGC 1 cut(s) 233
NlaIII CATG 1 cut(s) 247
OliI CACNNNNGTG 1 cut(s) 148
PcsI WCGNNNNNNNCGW 1 cut(s) 146
PctI GAATGC 1 cut(s) 420
PfeI GAWTC 2 cut(s) 73, 97
PkrI GCNGC 1 cut(s) 364
PstI CTGCAG 1 cut(s) 269
RsaI GTAC 1 cut(s) 207
RsaNI GTAC 1 cut(s) 206
RseI CAYNNNNRTG 1 cut(s) 148
SaqAI TTAA 2 cut(s) 345, 389
SatI GCNGC 1 cut(s) 363
Sau3AI GATC 1 cut(s) 180
ScrFI CCNGG 1 cut(s) 468
SduI GDGCHC 1 cut(s) 16
SetI ASST 3 cut(s) 112, 235, 431
SfaNI GCATC 2 cut(s) 111, 386
SfcI CTRYAG 2 cut(s) 114, 265
SmiMI CAYNNNNRTG 1 cut(s) 148
Sse9I AATT 2 cut(s) 67, 154
SsiI CCGC 1 cut(s) 249
SspI AATATT 1 cut(s) 342
SspMI CTAG 2 cut(s) 234, 426
StyD4I CCNGG 1 cut(s) 466
StyI CCWWGG 1 cut(s) 44
TaaI ACNGT 2 cut(s) 118, 292
TaqI TCGA 2 cut(s) 71, 140
TasI AATT 2 cut(s) 67, 154
TfiI GAWTC 2 cut(s) 73, 97
Tru1I TTAA 2 cut(s) 345, 389
Tru9I TTAA 2 cut(s) 345, 389
TscAI CASTG 2 cut(s) 123, 279
TseI GCWGC 1 cut(s) 362
TspDTI ATGAA 2 cut(s) 53, 446
TspGWI ACGGA 1 cut(s) 138
TspRI CASTG 2 cut(s) 123, 279
XcmI CCANNNNNNNNNTGG 2 cut(s) 388, 413
XspI CTAG 2 cut(s) 234, 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.