Rmu_sc0007154.1_g000007

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007154.1
OG0000142
Physical Location & Seq
Reverse (-)
13942 .. 14811
870 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007154.1_g000007.1.cds

Sequence Viewer

Length: 615 bp
atgcaatcgattctacagcggctatgcataatagattacctcatgtgtcgtgaggtatctcgttcttggcgagctgctgttgatagggcaattatggtgatagagtcatgctcccatgtatcacagacgtccacaaattcacactacgagaacaatcttcctaatttcttcaggaaagtggtggcatcctcaataccaacaaagcagcagtactgtattgtggttagcctttgctttgataagaaattgtatttgtgtaggcacattgacaagtcttggaccctcattgagaccggctattgcgatgatatagagatagtcgatgacaaattatatgctgcaacgaagacaggatccgagttgattctaatggtgtttagctttagcatccacgaagttcatgatggtggccctctcacctatacagctgaaaggttttgttttaggccaagtaatttggtggataattttcaaatagtggaaggagttacttattggactctctacactgacctgtacctagcaaaaggttctgcttcagaggaaatgtttttgattcttactgaggtggtcagtgtttacatgcaatgcacttcgaccaataccttacactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295

Protein Analysis

204

Amino Acids

23.44

Weight (kDa)

5.47

Isoelectric Point (pI)

36.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000142)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 131
AciI CCGC 1 cut(s) 19
AclWI GGATC 2 cut(s) 348, 361
AcsI RAATTY 1 cut(s) 136
AcuI CTGAAG 2 cut(s) 154, 522
AcyI GRCGYC 1 cut(s) 128
AfaI GTAC 2 cut(s) 212, 518
AgsI TTSAA 1 cut(s) 473
AluBI AGCT 3 cut(s) 74, 381, 428
AluI AGCT 3 cut(s) 74, 381, 428
Alw26I GTCTC 1 cut(s) 284
AlwI GGATC 2 cut(s) 348, 361
AoxI GGCC 2 cut(s) 409, 446
ApeKI GCWGC 3 cut(s) 74, 205, 338
ApoI RAATTY 1 cut(s) 136
AspS9I GGNCC 2 cut(s) 279, 410
AsuHPI GGTGA 2 cut(s) 109, 409
AvaII GGWCC 1 cut(s) 279
BamHI GGATCC 1 cut(s) 353
BbsI GAAGAC 1 cut(s) 353
BbvI GCAGC 3 cut(s) 61, 217, 325
BccI CCATC 1 cut(s) 398
BcoDI GTCTC 1 cut(s) 284
BfaI CTAG 2 cut(s) 521, 613
BfmI CTRYAG 1 cut(s) 14
BisI GCNGC 4 cut(s) 20, 75, 206, 339
BlsI GCNGC 4 cut(s) 21, 76, 207, 340
BmcAI AGTACT 1 cut(s) 212
Bme18I GGWCC 1 cut(s) 279
BmgT120I GGNCC 2 cut(s) 279, 410
BmiI GGNNCC 2 cut(s) 281, 355
BmsI GCATC 2 cut(s) 194, 396
BpiI GAAGAC 1 cut(s) 353
BplI GAGNNNNNCTC 2 cut(s) 95, 127
Bsa29I ATCGAT 1 cut(s) 8
BsaHI GRCGYC 1 cut(s) 128
BsaI GGTCTC 1 cut(s) 284
Bse118I RCCGGY 1 cut(s) 293
Bse3DI GCAATG 1 cut(s) 593
BseCI ATCGAT 1 cut(s) 8
BseGI GGATG 2 cut(s) 185, 387
BseMI GCAATG 1 cut(s) 593
BseMII CTCAG 1 cut(s) 555
BseXI GCAGC 3 cut(s) 61, 217, 325
BshFI GGCC 2 cut(s) 411, 448
BshVI ATCGAT 1 cut(s) 8
BsiSI CCGG 1 cut(s) 294
BsmAI GTCTC 1 cut(s) 284
BsnI GGCC 2 cut(s) 411, 448
Bso31I GGTCTC 1 cut(s) 284
Bsp143I GATC 1 cut(s) 353
BspACI CCGC 1 cut(s) 19
BspANI GGCC 2 cut(s) 411, 448
BspCNI CTCAG 1 cut(s) 556
BspDI ATCGAT 1 cut(s) 8
BspHI TCATGA 1 cut(s) 400
BspLI GGNNCC 2 cut(s) 281, 355
BspPI GGATC 2 cut(s) 348, 361
BspTNI GGTCTC 1 cut(s) 284
BsrDI GCAATG 1 cut(s) 593
BsrFI RCCGGY 1 cut(s) 293
BssAI RCCGGY 1 cut(s) 293
BssMI GATC 1 cut(s) 353
BssNI GRCGYC 1 cut(s) 128
Bst4CI ACNGT 1 cut(s) 215
BstACI GRCGYC 1 cut(s) 128
BstC8I GCNNGC 1 cut(s) 72
BstDEI CTNAG 1 cut(s) 564
BstF5I GGATG 2 cut(s) 185, 387
BstKTI GATC 1 cut(s) 356
BstMAI GTCTC 1 cut(s) 284
BstMBI GATC 1 cut(s) 353
BstNSI RCATGY 1 cut(s) 586
BstSFI CTRYAG 1 cut(s) 14
BstV1I GCAGC 3 cut(s) 61, 217, 325
BstV2I GAAGAC 1 cut(s) 353
BstX2I RGATCY 1 cut(s) 353
BstYI RGATCY 1 cut(s) 353
Bsu15I ATCGAT 1 cut(s) 8
BsuRI GGCC 2 cut(s) 411, 448
BsuTUI ATCGAT 1 cut(s) 8
BtgZI GCGATG 1 cut(s) 318
BtsCI GGATG 2 cut(s) 185, 387
BtsIMutI CAGTG 2 cut(s) 507, 580
Cac8I GCNNGC 1 cut(s) 72
CciI TCATGA 1 cut(s) 400
Cfr10I RCCGGY 1 cut(s) 293
Cfr13I GGNCC 2 cut(s) 279, 410
ClaI ATCGAT 1 cut(s) 8
Csp6I GTAC 2 cut(s) 211, 517
CviAII CATG 5 cut(s) 43, 108, 116, 401, 583
CviJI RGCY 8 cut(s) 22, 74, 228, 297, 381, 411, 428, 448
CviKI_1 RGCY 8 cut(s) 22, 74, 228, 297, 381, 411, 428, 448
CviQI GTAC 2 cut(s) 211, 517
DdeI CTNAG 1 cut(s) 564
DpnI GATC 1 cut(s) 355
DpnII GATC 1 cut(s) 353
Eco31I GGTCTC 1 cut(s) 284
Eco47I GGWCC 1 cut(s) 279
Eco57I CTGAAG 2 cut(s) 154, 522
EcoT22I ATGCAT 1 cut(s) 29
FaeI CATG 5 cut(s) 46, 111, 119, 404, 586
FatI CATG 5 cut(s) 42, 107, 115, 400, 582
Fnu4HI GCNGC 4 cut(s) 20, 75, 206, 339
FokI GGATG 2 cut(s) 172, 374
Fsp4HI GCNGC 4 cut(s) 20, 75, 206, 339
FspBI CTAG 2 cut(s) 521, 613
GluI GCNGC 4 cut(s) 20, 75, 206, 339
HaeIII GGCC 2 cut(s) 411, 448
HapII CCGG 1 cut(s) 294
Hin1I GRCGYC 1 cut(s) 128
Hin1II CATG 5 cut(s) 46, 111, 119, 404, 586
HinfI GANTC 5 cut(s) 10, 104, 364, 499, 556
HpaII CCGG 1 cut(s) 294
HphI GGTGA 2 cut(s) 109, 409
Hpy166II GTNNAC 2 cut(s) 132, 580
Hpy188I TCNGA 2 cut(s) 358, 541
Hpy188III TCNNGA 3 cut(s) 50, 172, 401
Hpy8I GTNNAC 2 cut(s) 132, 580
HpyAV CCTTC 1 cut(s) 476
HpyCH4III ACNGT 1 cut(s) 215
HpyCH4IV ACGT 1 cut(s) 128
HpyCH4V TGCA 5 cut(s) 4, 27, 341, 586, 591
HpyF3I CTNAG 1 cut(s) 564
HpySE526I ACGT 1 cut(s) 128
Hsp92I GRCGYC 1 cut(s) 128
Hsp92II CATG 5 cut(s) 46, 111, 119, 404, 586
Kzo9I GATC 1 cut(s) 353
LmnI GCTCC 1 cut(s) 116
LpnPI CCDG 4 cut(s) 157, 307, 336, 527
Lsp1109I GCAGC 3 cut(s) 61, 217, 325
LweI GCATC 2 cut(s) 194, 396
MaeI CTAG 2 cut(s) 521, 613
MaeII ACGT 1 cut(s) 128
MaeIII GTNAC 1 cut(s) 487
MalI GATC 1 cut(s) 355
MboI GATC 1 cut(s) 353
MboII GAAGA 3 cut(s) 149, 160, 358
MflI RGATCY 1 cut(s) 353
MluCI AATT 7 cut(s) 90, 136, 163, 245, 329, 454, 466
MlyI GAGTC 2 cut(s) 113, 493
MnlI CCTC 7 cut(s) 46, 50, 199, 293, 423, 535, 559
Mph1103I ATGCAT 1 cut(s) 29
MslI CAYNNNNRTG 1 cut(s) 405
MspA1I CMGCKG 2 cut(s) 19, 428
MspI CCGG 1 cut(s) 294
NdeII GATC 1 cut(s) 353
NlaIII CATG 5 cut(s) 46, 111, 119, 404, 586
NlaIV GGNNCC 2 cut(s) 281, 355
NsiI ATGCAT 1 cut(s) 29
NspI RCATGY 1 cut(s) 586
PagI TCATGA 1 cut(s) 400
PcsI WCGNNNNNNNCGW 1 cut(s) 67
PfeI GAWTC 3 cut(s) 10, 364, 556
PkrI GCNGC 4 cut(s) 21, 76, 207, 340
PleI GAGTC 2 cut(s) 112, 493
PpsI GAGTC 2 cut(s) 112, 493
PspN4I GGNNCC 2 cut(s) 281, 355
PspPI GGNCC 2 cut(s) 279, 410
PsuI RGATCY 1 cut(s) 353
PvuII CAGCTG 1 cut(s) 428
RsaI GTAC 2 cut(s) 212, 518
RsaNI GTAC 2 cut(s) 211, 517
RseI CAYNNNNRTG 1 cut(s) 405
SatI GCNGC 4 cut(s) 20, 75, 206, 339
Sau3AI GATC 1 cut(s) 353
Sau96I GGNCC 2 cut(s) 279, 410
ScaI AGTACT 1 cut(s) 212
SchI GAGTC 2 cut(s) 113, 493
SfaNI GCATC 2 cut(s) 194, 396
SfcI CTRYAG 1 cut(s) 14
SinI GGWCC 1 cut(s) 279
SmiMI CAYNNNNRTG 1 cut(s) 405
Sse9I AATT 7 cut(s) 90, 136, 163, 245, 329, 454, 466
SsiI CCGC 1 cut(s) 19
SspMI CTAG 2 cut(s) 521, 613
TaaI ACNGT 1 cut(s) 215
TaiI ACGT 1 cut(s) 131
TaqI TCGA 3 cut(s) 8, 321, 596
TasI AATT 7 cut(s) 90, 136, 163, 245, 329, 454, 466
TatI WGTACW 1 cut(s) 210
TauI GCSGC 1 cut(s) 22
TfiI GAWTC 3 cut(s) 10, 364, 556
TscAI CASTG 2 cut(s) 514, 580
TseI GCWGC 3 cut(s) 74, 205, 338
TspDTI ATGAA 1 cut(s) 389
TspRI CASTG 2 cut(s) 514, 580
VpaK11BI GGWCC 1 cut(s) 279
XapI RAATTY 1 cut(s) 136
XceI RCATGY 1 cut(s) 586
XspI CTAG 2 cut(s) 521, 613
ZraI GACGTC 1 cut(s) 129
ZrmI AGTACT 1 cut(s) 212
Zsp2I ATGCAT 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.