Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 882 |
| AbsI | CCTCGAGG | 1 cut(s) | 747 |
| AccB1I | GGYRCC | 1 cut(s) | 1429 |
| AccI | GTMKAC | 1 cut(s) | 1038 |
| AciI | CCGC | 2 cut(s) | 486, 1284 |
| AclWI | GGATC | 1 cut(s) | 155 |
| AcoI | YGGCCR | 1 cut(s) | 652 |
| AcsI | RAATTY | 3 cut(s) | 172, 1412, 1615 |
| AcuI | CTGAAG | 2 cut(s) | 195, 1217 |
| AdeI | CACNNNGTG | 1 cut(s) | 482 |
| AfaI | GTAC | 1 cut(s) | 1655 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1194 |
| AflII | CTTAAG | 1 cut(s) | 1468 |
| AflIII | ACRYGT | 1 cut(s) | 1016 |
| AjnI | CCWGG | 1 cut(s) | 627 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 928, 960 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1081, 1113 |
| AluBI | AGCT | 6 cut(s) | 136, 896, 1316, 1388, 1542, 1601 |
| AluI | AGCT | 6 cut(s) | 136, 896, 1316, 1388, 1542, 1601 |
| Alw21I | GWGCWC | 3 cut(s) | 138, 624, 1457 |
| Alw26I | GTCTC | 5 cut(s) | 382, 511, 868, 890, 1639 |
| AlwI | GGATC | 1 cut(s) | 155 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1268 |
| Ama87I | CYCGRG | 1 cut(s) | 747 |
| AoxI | GGCC | 5 cut(s) | 265, 426, 652, 1128, 1660 |
| ApoI | RAATTY | 3 cut(s) | 172, 1412, 1615 |
| AspS9I | GGNCC | 2 cut(s) | 1032, 1763 |
| AsuHPI | GGTGA | 9 cut(s) | 226, 703, 790, 991, 1051, 1135, 1150, 1195, 1522 |
| AvaI | CYCGRG | 1 cut(s) | 747 |
| AvaII | GGWCC | 2 cut(s) | 1032, 1763 |
| BaeGI | GKGCMC | 1 cut(s) | 251 |
| BanI | GGYRCC | 1 cut(s) | 1429 |
| BanII | GRGCYC | 1 cut(s) | 138 |
| Bbv12I | GWGCWC | 3 cut(s) | 138, 624, 1457 |
| BccI | CCATC | 5 cut(s) | 26, 41, 96, 151, 1484 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 878, 912 |
| BciT130I | CCWGG | 1 cut(s) | 629 |
| BciVI | GTATCC | 1 cut(s) | 964 |
| BclI | TGATCA | 1 cut(s) | 1275 |
| BcoDI | GTCTC | 5 cut(s) | 382, 511, 868, 890, 1639 |
| BfaI | CTAG | 8 cut(s) | 125, 479, 905, 921, 1370, 1574, 1604, 1768 |
| BfmI | CTRYAG | 1 cut(s) | 111 |
| BfrI | CTTAAG | 1 cut(s) | 1468 |
| BfuI | GTATCC | 1 cut(s) | 964 |
| Bme1390I | CCNGG | 1 cut(s) | 629 |
| Bme18I | GGWCC | 2 cut(s) | 1032, 1763 |
| BmeT110I | CYCGRG | 1 cut(s) | 747 |
| BmgT120I | GGNCC | 2 cut(s) | 1032, 1763 |
| BmiI | GGNNCC | 4 cut(s) | 1120, 1431, 1764, 1765 |
| BmrFI | CCNGG | 1 cut(s) | 629 |
| BmsI | GCATC | 2 cut(s) | 280, 603 |
| BpuEI | CTTGAG | 2 cut(s) | 863, 951 |
| Bsa29I | ATCGAT | 1 cut(s) | 733 |
| BsaAI | YACGTR | 1 cut(s) | 1340 |
| BsaI | GGTCTC | 1 cut(s) | 382 |
| BsaJI | CCNNGG | 5 cut(s) | 262, 655, 944, 1216, 1515 |
| BsaWI | WCCGGW | 2 cut(s) | 1086, 1432 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1194 |
| Bse1I | ACTGG | 3 cut(s) | 100, 990, 1651 |
| BseBI | CCWGG | 1 cut(s) | 629 |
| BseCI | ATCGAT | 1 cut(s) | 733 |
| BseDI | CCNNGG | 5 cut(s) | 262, 655, 944, 1216, 1515 |
| BseGI | GGATG | 5 cut(s) | 107, 371, 808, 823, 1446 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1194 |
| BseMII | CTCAG | 5 cut(s) | 123, 132, 522, 552, 1538 |
| BseNI | ACTGG | 3 cut(s) | 100, 990, 1651 |
| BseRI | GAGGAG | 1 cut(s) | 1142 |
| BseSI | GKGCMC | 1 cut(s) | 251 |
| BseYI | CCCAGC | 1 cut(s) | 1379 |
| BsgI | GTGCAG | 1 cut(s) | 57 |
| BshFI | GGCC | 5 cut(s) | 267, 428, 654, 1130, 1662 |
| BshNI | GGYRCC | 1 cut(s) | 1429 |
| BshVI | ATCGAT | 1 cut(s) | 733 |
| BsiHKAI | GWGCWC | 3 cut(s) | 138, 624, 1457 |
| BsiHKCI | CYCGRG | 1 cut(s) | 747 |
| BsiSI | CCGG | 2 cut(s) | 1087, 1433 |
| BslFI | GGGAC | 3 cut(s) | 697, 1169, 1197 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1194 |
| BsmAI | GTCTC | 5 cut(s) | 382, 511, 868, 890, 1639 |
| BsmBI | CGTCTC | 1 cut(s) | 511 |
| BsmFI | GGGAC | 3 cut(s) | 697, 1169, 1197 |
| BsmI | GAATGC | 1 cut(s) | 422 |
| BsnI | GGCC | 5 cut(s) | 267, 428, 654, 1130, 1662 |
| Bso31I | GGTCTC | 1 cut(s) | 382 |
| BsoBI | CYCGRG | 1 cut(s) | 747 |
| Bsp1286I | GDGCHC | 4 cut(s) | 138, 251, 624, 1457 |
| Bsp143I | GATC | 3 cut(s) | 147, 564, 1275 |
| BspACI | CCGC | 2 cut(s) | 486, 1284 |
| BspANI | GGCC | 5 cut(s) | 267, 428, 654, 1130, 1662 |
| BspCNI | CTCAG | 5 cut(s) | 124, 133, 521, 551, 1539 |
| BspDI | ATCGAT | 1 cut(s) | 733 |
| BspHI | TCATGA | 1 cut(s) | 1080 |
| BspLI | GGNNCC | 4 cut(s) | 1120, 1431, 1764, 1765 |
| BspMAI | CTGCAG | 1 cut(s) | 115 |
| BspPI | GGATC | 1 cut(s) | 155 |
| BspT107I | GGYRCC | 1 cut(s) | 1429 |
| BspTI | CTTAAG | 1 cut(s) | 1468 |
| BspTNI | GGTCTC | 1 cut(s) | 382 |
| BsrI | ACTGG | 3 cut(s) | 100, 990, 1651 |
| BssECI | CCNNGG | 5 cut(s) | 262, 655, 944, 1216, 1515 |
| BssMI | GATC | 3 cut(s) | 147, 564, 1275 |
| BssT1I | CCWWGG | 3 cut(s) | 262, 944, 1216 |
| Bst2UI | CCWGG | 1 cut(s) | 629 |
| Bst4CI | ACNGT | 8 cut(s) | 23, 316, 688, 961, 1036, 1516, 1612, 1688 |
| Bst6I | CTCTTC | 5 cut(s) | 546, 794, 969, 1142, 1160 |
| BstAFI | CTTAAG | 1 cut(s) | 1468 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 221 |
| BstBAI | YACGTR | 1 cut(s) | 1340 |
| BstC8I | GCNNGC | 4 cut(s) | 108, 1544, 1596, 1664 |
| BstDEI | CTNAG | 6 cut(s) | 132, 141, 508, 538, 1547, 1621 |
| BstDSI | CCRYGG | 1 cut(s) | 1515 |
| BstEII | GGTNACC | 1 cut(s) | 1510 |
| BstF5I | GGATG | 5 cut(s) | 107, 371, 808, 823, 1446 |
| BstKTI | GATC | 3 cut(s) | 150, 567, 1278 |
| BstMAI | GTCTC | 5 cut(s) | 382, 511, 868, 890, 1639 |
| BstMBI | GATC | 3 cut(s) | 147, 564, 1275 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 221, 1385 |
| BstNI | CCWGG | 1 cut(s) | 629 |
| BstNSI | RCATGY | 1 cut(s) | 1020 |
| BstPI | GGTNACC | 1 cut(s) | 1510 |
| BstSCI | CCNGG | 1 cut(s) | 627 |
| BstSFI | CTRYAG | 1 cut(s) | 111 |
| BstSLI | GKGCMC | 1 cut(s) | 251 |
| BstX2I | RGATCY | 1 cut(s) | 147 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 244, 1483 |
| BstYI | RGATCY | 1 cut(s) | 147 |
| Bsu15I | ATCGAT | 1 cut(s) | 733 |
| BsuI | GTATCC | 1 cut(s) | 964 |
| BsuRI | GGCC | 5 cut(s) | 267, 428, 654, 1130, 1662 |
| BsuTUI | ATCGAT | 1 cut(s) | 733 |
| BtgI | CCRYGG | 1 cut(s) | 1515 |
| BtsCI | GGATG | 5 cut(s) | 107, 371, 808, 823, 1446 |
| BtsIMutI | CAGTG | 6 cut(s) | 28, 693, 966, 1269, 1677, 1693 |
| Cac8I | GCNNGC | 4 cut(s) | 108, 1544, 1596, 1664 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1268 |
| CciI | TCATGA | 1 cut(s) | 1080 |
| Cfr13I | GGNCC | 2 cut(s) | 1032, 1763 |
| ClaI | ATCGAT | 1 cut(s) | 733 |
| CseI | GACGC | 1 cut(s) | 312 |
| Csp6I | GTAC | 1 cut(s) | 1654 |
| CviAII | CATG | 8 cut(s) | 244, 562, 647, 792, 994, 1017, 1081, 1717 |
| CviQI | GTAC | 1 cut(s) | 1654 |
| DdeI | CTNAG | 6 cut(s) | 132, 141, 508, 538, 1547, 1621 |
| DpnI | GATC | 3 cut(s) | 149, 566, 1277 |
| DpnII | GATC | 3 cut(s) | 147, 564, 1275 |
| DraIII | CACNNNGTG | 1 cut(s) | 482 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 882 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 882 |
| EaeI | YGGCCR | 1 cut(s) | 652 |
| Eam1104I | CTCTTC | 5 cut(s) | 546, 794, 969, 1142, 1160 |
| EarI | CTCTTC | 5 cut(s) | 546, 794, 969, 1142, 1160 |
| Ecl136II | GAGCTC | 1 cut(s) | 136 |
| Eco130I | CCWWGG | 3 cut(s) | 262, 944, 1216 |
| Eco24I | GRGCYC | 1 cut(s) | 138 |
| Eco31I | GGTCTC | 1 cut(s) | 382 |
| Eco47I | GGWCC | 2 cut(s) | 1032, 1763 |
| Eco53kI | GAGCTC | 1 cut(s) | 136 |
| Eco57I | CTGAAG | 2 cut(s) | 195, 1217 |
| Eco88I | CYCGRG | 1 cut(s) | 747 |
| Eco91I | GGTNACC | 1 cut(s) | 1510 |
| EcoICRI | GAGCTC | 1 cut(s) | 136 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1763 |
| EcoO65I | GGTNACC | 1 cut(s) | 1510 |
| EcoRII | CCWGG | 1 cut(s) | 627 |
| EcoT14I | CCWWGG | 3 cut(s) | 262, 944, 1216 |
| EcoT22I | ATGCAT | 1 cut(s) | 422 |
| EcoT38I | GRGCYC | 1 cut(s) | 138 |
| ErhI | CCWWGG | 3 cut(s) | 262, 944, 1216 |
| Esp3I | CGTCTC | 1 cut(s) | 511 |
| FaeI | CATG | 8 cut(s) | 247, 565, 650, 795, 997, 1020, 1084, 1720 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 928, 960 |
| FaqI | GGGAC | 3 cut(s) | 697, 1169, 1197 |
| FatI | CATG | 8 cut(s) | 243, 561, 646, 791, 993, 1016, 1080, 1716 |
| FbaI | TGATCA | 1 cut(s) | 1275 |
| FblI | GTMKAC | 1 cut(s) | 1038 |
| FokI | GGATG | 5 cut(s) | 114, 358, 795, 810, 1453 |
| FriOI | GRGCYC | 1 cut(s) | 138 |
| FspBI | CTAG | 8 cut(s) | 125, 479, 905, 921, 1370, 1574, 1604, 1768 |
| GsaI | CCCAGC | 1 cut(s) | 1383 |
| HaeIII | GGCC | 5 cut(s) | 267, 428, 654, 1130, 1662 |
| HapII | CCGG | 2 cut(s) | 1087, 1433 |
| HgaI | GACGC | 1 cut(s) | 312 |
| Hin1II | CATG | 8 cut(s) | 247, 565, 650, 795, 997, 1020, 1084, 1720 |
| HincII | GTYRAC | 3 cut(s) | 360, 1014, 1321 |
| HindII | GTYRAC | 3 cut(s) | 360, 1014, 1321 |
| HindIII | AAGCTT | 1 cut(s) | 1386 |
| HpaI | GTTAAC | 1 cut(s) | 360 |
| HpaII | CCGG | 2 cut(s) | 1087, 1433 |
| HphI | GGTGA | 9 cut(s) | 226, 703, 790, 991, 1051, 1135, 1150, 1195, 1522 |
| Hpy166II | GTNNAC | 4 cut(s) | 360, 1014, 1039, 1321 |
| Hpy188I | TCNGA | 7 cut(s) | 142, 302, 523, 541, 1197, 1236, 1424 |
| Hpy188III | TCNNGA | 3 cut(s) | 90, 887, 1081 |
| Hpy8I | GTNNAC | 4 cut(s) | 360, 1014, 1039, 1321 |
| HpyAV | CCTTC | 9 cut(s) | 278, 398, 828, 1066, 1087, 1122, 1132, 1241, 1299 |
| HpyCH4III | ACNGT | 8 cut(s) | 23, 316, 688, 961, 1036, 1516, 1612, 1688 |
| HpyCH4IV | ACGT | 2 cut(s) | 504, 1339 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 221, 1385 |
| HpyF3I | CTNAG | 6 cut(s) | 132, 141, 508, 538, 1547, 1621 |
| HpySE526I | ACGT | 2 cut(s) | 504, 1339 |
| Hsp92II | CATG | 8 cut(s) | 247, 565, 650, 795, 997, 1020, 1084, 1720 |
| KflI | GGGWCCC | 1 cut(s) | 1763 |
| Ksp22I | TGATCA | 1 cut(s) | 1275 |
| KspAI | GTTAAC | 1 cut(s) | 360 |
| Kzo9I | GATC | 3 cut(s) | 147, 564, 1275 |
| LweI | GCATC | 2 cut(s) | 280, 603 |
| MaeI | CTAG | 8 cut(s) | 125, 479, 905, 921, 1370, 1574, 1604, 1768 |
| MaeII | ACGT | 2 cut(s) | 504, 1339 |
| MaeIII | GTNAC | 7 cut(s) | 127, 178, 232, 708, 961, 1510, 1528 |
| MalI | GATC | 3 cut(s) | 149, 566, 1277 |
| MboI | GATC | 3 cut(s) | 147, 564, 1275 |
| MboII | GAAGA | 9 cut(s) | 563, 565, 811, 938, 986, 1129, 1147, 1714, 1750 |
| MflI | RGATCY | 1 cut(s) | 147 |
| MhlI | GDGCHC | 4 cut(s) | 138, 251, 624, 1457 |
| MluCI | AATT | 9 cut(s) | 172, 196, 238, 440, 527, 1245, 1412, 1615, 1746 |
| MlyI | GAGTC | 5 cut(s) | 654, 870, 958, 1215, 1219 |
| Mph1103I | ATGCAT | 1 cut(s) | 422 |
| MseI | TTAA | 3 cut(s) | 206, 359, 1469 |
| MslI | CAYNNNNRTG | 2 cut(s) | 167, 1481 |
| MspCI | CTTAAG | 1 cut(s) | 1468 |
| MspI | CCGG | 2 cut(s) | 1087, 1433 |
| MspR9I | CCNGG | 1 cut(s) | 629 |
| Mva1269I | GAATGC | 1 cut(s) | 422 |
| MvaI | CCWGG | 1 cut(s) | 629 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 221, 1385 |
| NdeII | GATC | 3 cut(s) | 147, 564, 1275 |
| NlaIII | CATG | 8 cut(s) | 247, 565, 650, 795, 997, 1020, 1084, 1720 |
| NlaIV | GGNNCC | 4 cut(s) | 1120, 1431, 1764, 1765 |
| NmeAIII | GCCGAG | 2 cut(s) | 680, 1106 |
| NmuCI | GTSAC | 4 cut(s) | 178, 232, 961, 1510 |
| NsiI | ATGCAT | 1 cut(s) | 422 |
| NspI | RCATGY | 1 cut(s) | 1020 |
| PaeR7I | CTCGAG | 1 cut(s) | 747 |
| PagI | TCATGA | 1 cut(s) | 1080 |
| PciI | ACATGT | 1 cut(s) | 1016 |
| PctI | GAATGC | 1 cut(s) | 422 |
| PfeI | GAWTC | 5 cut(s) | 256, 533, 735, 838, 859 |
| PleI | GAGTC | 5 cut(s) | 654, 870, 958, 1215, 1218 |
| PpsI | GAGTC | 5 cut(s) | 654, 870, 958, 1215, 1218 |
| Ppu21I | YACGTR | 1 cut(s) | 1340 |
| PpuMI | RGGWCCY | 1 cut(s) | 1763 |
| PscI | ACATGT | 1 cut(s) | 1016 |
| Psp124BI | GAGCTC | 1 cut(s) | 138 |
| Psp5II | RGGWCCY | 1 cut(s) | 1763 |
| Psp6I | CCWGG | 1 cut(s) | 627 |
| PspEI | GGTNACC | 1 cut(s) | 1510 |
| PspFI | CCCAGC | 1 cut(s) | 1379 |
| PspGI | CCWGG | 1 cut(s) | 627 |
| PspN4I | GGNNCC | 4 cut(s) | 1120, 1431, 1764, 1765 |
| PspPI | GGNCC | 2 cut(s) | 1032, 1763 |
| PspPPI | RGGWCCY | 1 cut(s) | 1763 |
| PspXI | VCTCGAGB | 1 cut(s) | 747 |
| PstI | CTGCAG | 1 cut(s) | 115 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1268 |
| PsuI | RGATCY | 1 cut(s) | 147 |
| RsaI | GTAC | 1 cut(s) | 1655 |
| RsaNI | GTAC | 1 cut(s) | 1654 |
| RseI | CAYNNNNRTG | 2 cut(s) | 167, 1481 |
| SacI | GAGCTC | 1 cut(s) | 138 |
| SaqAI | TTAA | 3 cut(s) | 206, 359, 1469 |
| Sau3AI | GATC | 3 cut(s) | 147, 564, 1275 |
| Sau96I | GGNCC | 2 cut(s) | 1032, 1763 |
| SchI | GAGTC | 5 cut(s) | 654, 870, 958, 1215, 1219 |
| ScrFI | CCNGG | 1 cut(s) | 629 |
| SduI | GDGCHC | 4 cut(s) | 138, 251, 624, 1457 |
| SfaNI | GCATC | 2 cut(s) | 280, 603 |
| SfcI | CTRYAG | 1 cut(s) | 111 |
| Sfr274I | CTCGAG | 1 cut(s) | 747 |
| SinI | GGWCC | 2 cut(s) | 1032, 1763 |
| SlaI | CTCGAG | 1 cut(s) | 747 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 167, 1481 |
| SmlI | CTYRAG | 4 cut(s) | 747, 878, 966, 1468 |
| SmoI | CTYRAG | 4 cut(s) | 747, 878, 966, 1468 |
| Sse9I | AATT | 9 cut(s) | 172, 196, 238, 440, 527, 1245, 1412, 1615, 1746 |
| SsiI | CCGC | 2 cut(s) | 486, 1284 |
| SspMI | CTAG | 8 cut(s) | 125, 479, 905, 921, 1370, 1574, 1604, 1768 |
| SstI | GAGCTC | 1 cut(s) | 138 |
| StyD4I | CCNGG | 1 cut(s) | 627 |
| StyI | CCWWGG | 3 cut(s) | 262, 944, 1216 |
| TaaI | ACNGT | 8 cut(s) | 23, 316, 688, 961, 1036, 1516, 1612, 1688 |
| TaiI | ACGT | 2 cut(s) | 507, 1342 |
| TaqI | TCGA | 6 cut(s) | 14, 67, 81, 733, 748, 888 |
| TasI | AATT | 9 cut(s) | 172, 196, 238, 440, 527, 1245, 1412, 1615, 1746 |
| TatI | WGTACW | 1 cut(s) | 1653 |
| TfiI | GAWTC | 5 cut(s) | 256, 533, 735, 838, 859 |
| Tru1I | TTAA | 3 cut(s) | 206, 359, 1469 |
| Tru9I | TTAA | 3 cut(s) | 206, 359, 1469 |
| TscAI | CASTG | 6 cut(s) | 28, 693, 966, 1269, 1684, 1693 |
| TseFI | GTSAC | 4 cut(s) | 178, 232, 961, 1510 |
| Tsp45I | GTSAC | 4 cut(s) | 178, 232, 961, 1510 |
| TspRI | CASTG | 6 cut(s) | 28, 693, 966, 1269, 1684, 1693 |
| Vha464I | CTTAAG | 1 cut(s) | 1468 |
| VpaK11BI | GGWCC | 2 cut(s) | 1032, 1763 |
| XapI | RAATTY | 3 cut(s) | 172, 1412, 1615 |
| XceI | RCATGY | 1 cut(s) | 1020 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 340 |
| XhoI | CTCGAG | 1 cut(s) | 747 |
| XmiI | GTMKAC | 1 cut(s) | 1038 |
| XspI | CTAG | 8 cut(s) | 125, 479, 905, 921, 1370, 1574, 1604, 1768 |
| Zsp2I | ATGCAT | 1 cut(s) | 422 |