Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000142

Physical Location & Seq

Genomic Coordinates Forward (+)

65044933 .. 65047472

Gene Structure 2540 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG484900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGAAGATCCTCAATATAAGAATCCTATCAAGAATGTTGTTATGGTGTCTTGATTTTATTCGTCGCTGGCTCAAAACGATCGGGACTGTGCATGAGGACAGGTGGTCTAAGAAACTCCCAGATGATGTGATGCAATTGATTCTACCACGACTGCTCGTGTCAGATTATTTCAGTTGCCGTGACGTGTGCCGTTCTTGGCGAGCTGCAATTGACAGCAAGCGTTGCCTTCTTGCTAATCAACTCCCATGGCTTTTACTCAATTCTCATCACTCATTCTACATTAAAGATGACTACTTTGTGCAAGGAAGACATTACATATGCATCAGTGTTCACCGGAAGGCTACTGGTTGTAGTAAGAAAGAGCGGAATATCTGCATAACGTTAAGAATCATCATAAAAACAACCACACTAGTGATTGACCCAATTGACGAGGGATTGTACAGTCGCCAGCTCTTTCAATGCATTGTCAAAGACCTGATCTGCGGCACCCAAGCCGAGCCTCACCTGAGTCTACTACCTTCACCGAGTCTCTTTGACCGACTCCGCAAAACAAGTCGAGCCACCATTGGTTTCGAATTGAATCCGACCCACCGACGTGCAGAAAAGCCGGATTCAACCCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010468 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030684 GO:0030686 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070545 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904 GO:2000232

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT_2 Pescadillo_N

Protein Analysis

207

Amino Acids

24.25

Weight (kDa)

9.57

Isoelectric Point (pI)

52.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	38 - 72	4.6e-07	F-box-like
F-box	PF00646	38 - 75	3.9e-06	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000142)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica	MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica	Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis	pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis	RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata	RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora	Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa	Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha	Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana	Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	485
AccBSI	CCGCTC	1 cut(s)	364
AccI	GTMKAC	1 cut(s)	511
AciI	CCGC	3 cut(s)	364, 483, 544
AclI	AACGTT	1 cut(s)	380
AfaI	GTAC	1 cut(s)	440
AflIII	ACRYGT	1 cut(s)	183
AgsI	TTSAA	3 cut(s)	458, 580, 615
AhdI	GACNNNNNGTC	1 cut(s)	103
AhlI	ACTAGT	1 cut(s)	409
AjiI	CACGTC	2 cut(s)	184, 596
AleI	CACNNNNGTG	2 cut(s)	410, 594
AluBI	AGCT	2 cut(s)	203, 451
AluI	AGCT	2 cut(s)	203, 451
Alw26I	GTCTC	1 cut(s)	533
ApeKI	GCWGC	1 cut(s)	203
AsuHPI	GGTGA	3 cut(s)	323, 494, 513
AsuII	TTCGAA	1 cut(s)	573
BanI	GGYRCC	1 cut(s)	485
BauI	CACGAG	1 cut(s)	155
BbsI	GAAGAC	1 cut(s)	313
BbvI	GCAGC	1 cut(s)	190
BceAI	ACGGC	2 cut(s)	162, 174
BcoDI	GTCTC	1 cut(s)	533
BcuI	ACTAGT	1 cut(s)	409
BfaI	CTAG	1 cut(s)	410
BisI	GCNGC	2 cut(s)	204, 484
BlsI	GCNGC	2 cut(s)	205, 485
BmeRI	GACNNNNNGTC	1 cut(s)	103
BmgBI	CACGTC	2 cut(s)	184, 596
BmiI	GGNNCC	1 cut(s)	487
BmsI	GCATC	2 cut(s)	120, 330
BpiI	GAAGAC	1 cut(s)	313
Bpu14I	TTCGAA	1 cut(s)	573
BsaJI	CCNNGG	1 cut(s)	245
BsaWI	WCCGGW	1 cut(s)	333
Bse1I	ACTGG	1 cut(s)	349
BseDI	CCNNGG	1 cut(s)	245
BseMII	CTCAG	1 cut(s)	497
BseNI	ACTGG	1 cut(s)	349
BseXI	GCAGC	1 cut(s)	190
BsgI	GTGCAG	1 cut(s)	618
Bsh1285I	CGRYCG	1 cut(s)	81
BshNI	GGYRCC	1 cut(s)	485
BsiEI	CGRYCG	1 cut(s)	81
BsiSI	CCGG	2 cut(s)	334, 608
BslFI	GGGAC	1 cut(s)	97
BsmAI	GTCTC	1 cut(s)	533
BsmFI	GGGAC	1 cut(s)	97
Bsp119I	TTCGAA	1 cut(s)	573
Bsp1407I	TGTACA	1 cut(s)	438
Bsp143I	GATC	3 cut(s)	6, 78, 477
Bsp19I	CCATGG	1 cut(s)	245
BspACI	CCGC	3 cut(s)	364, 483, 544
BspCNI	CTCAG	1 cut(s)	498
BspLI	GGNNCC	1 cut(s)	487
BspT104I	TTCGAA	1 cut(s)	573
BspT107I	GGYRCC	1 cut(s)	485
BsrBI	CCGCTC	1 cut(s)	364
BsrGI	TGTACA	1 cut(s)	438
BsrI	ACTGG	1 cut(s)	349
BssECI	CCNNGG	1 cut(s)	245
BssMI	GATC	3 cut(s)	6, 78, 477
BssSI	CACGAG	1 cut(s)	155
BssT1I	CCWWGG	1 cut(s)	245
Bst2BI	CACGAG	1 cut(s)	155
Bst4CI	ACNGT	2 cut(s)	88, 443
BstAPI	GCANNNNNTGC	1 cut(s)	222
BstAUI	TGTACA	1 cut(s)	438
BstBI	TTCGAA	1 cut(s)	573
BstC8I	GCNNGC	4 cut(s)	68, 201, 218, 449
BstDEI	CTNAG	2 cut(s)	108, 506
BstDSI	CCRYGG	1 cut(s)	245
BstKTI	GATC	3 cut(s)	9, 81, 480
BstMAI	GTCTC	1 cut(s)	533
BstMBI	GATC	3 cut(s)	6, 78, 477
BstMCI	CGRYCG	1 cut(s)	81
BstMWI	GCNNNNNNNGC	1 cut(s)	222
BstV1I	GCAGC	1 cut(s)	190
BstV2I	GAAGAC	1 cut(s)	313
BstX2I	RGATCY	1 cut(s)	6
BstYI	RGATCY	1 cut(s)	6
BtgI	CCRYGG	1 cut(s)	245
BtrI	CACGTC	2 cut(s)	184, 596
BtsIMutI	CAGTG	1 cut(s)	331
Cac8I	GCNNGC	4 cut(s)	68, 201, 218, 449
Csp6I	GTAC	1 cut(s)	439
CviAII	CATG	2 cut(s)	92, 246
CviJI	RGCY	9 cut(s)	70, 203, 250, 341, 451, 494, 499, 560, 607
CviKI_1	RGCY	9 cut(s)	70, 203, 250, 341, 451, 494, 499, 560, 607
CviQI	GTAC	1 cut(s)	439
DdeI	CTNAG	2 cut(s)	108, 506
DpnI	GATC	3 cut(s)	8, 80, 479
DpnII	GATC	3 cut(s)	6, 78, 477
DriI	GACNNNNNGTC	1 cut(s)	103
Eam1105I	GACNNNNNGTC	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	245
EcoT14I	CCWWGG	1 cut(s)	245
EcoT22I	ATGCAT	2 cut(s)	323, 464
ErhI	CCWWGG	1 cut(s)	245
FaeI	CATG	2 cut(s)	95, 249
FaiI	YATR	8 cut(s)	17, 43, 93, 247, 317, 319, 377, 395
FaqI	GGGAC	1 cut(s)	97
FatI	CATG	2 cut(s)	91, 245
FauNDI	CATATG	1 cut(s)	317
FblI	GTMKAC	1 cut(s)	511
Fnu4HI	GCNGC	2 cut(s)	204, 484
Fsp4HI	GCNGC	2 cut(s)	204, 484
FspBI	CTAG	1 cut(s)	410
GluI	GCNGC	2 cut(s)	204, 484
HapII	CCGG	2 cut(s)	334, 608
Hin1II	CATG	2 cut(s)	95, 249
HinfI	GANTC	8 cut(s)	21, 139, 387, 508, 526, 540, 580, 611
HpaII	CCGG	2 cut(s)	334, 608
HphI	GGTGA	3 cut(s)	323, 494, 513
Hpy166II	GTNNAC	2 cut(s)	331, 512
Hpy188I	TCNGA	2 cut(s)	163, 585
Hpy188III	TCNNGA	3 cut(s)	30, 50, 82
Hpy8I	GTNNAC	2 cut(s)	331, 512
Hpy99I	CGWCG	2 cut(s)	66, 597
HpyAV	CCTTC	3 cut(s)	236, 331, 528
HpyCH4III	ACNGT	2 cut(s)	88, 443
HpyCH4IV	ACGT	3 cut(s)	183, 380, 595
HpyCH4V	TGCA	8 cut(s)	91, 133, 206, 301, 321, 375, 462, 599
HpyF10VI	GCNNNNNNNGC	1 cut(s)	222
HpyF3I	CTNAG	2 cut(s)	108, 506
HpySE526I	ACGT	3 cut(s)	183, 380, 595
Hsp92II	CATG	2 cut(s)	95, 249
Kzo9I	GATC	3 cut(s)	6, 78, 477
LpnPI	CCDG	8 cut(s)	52, 85, 132, 330, 347, 461, 488, 518
Lsp1109I	GCAGC	1 cut(s)	190
LweI	GCATC	2 cut(s)	120, 330
MaeI	CTAG	1 cut(s)	410
MaeII	ACGT	3 cut(s)	183, 380, 595
MaeIII	GTNAC	1 cut(s)	179
MalI	GATC	3 cut(s)	8, 80, 479
MbiI	CCGCTC	1 cut(s)	364
MboI	GATC	3 cut(s)	6, 78, 477
MboII	GAAGA	2 cut(s)	16, 318
MfeI	CAATTG	3 cut(s)	134, 207, 423
MflI	RGATCY	1 cut(s)	6
MluCI	AATT	5 cut(s)	134, 207, 259, 423, 575
MlyI	GAGTC	3 cut(s)	517, 534, 535
MmeI	TCCRAC	1 cut(s)	608
MnlI	CCTC	4 cut(s)	20, 88, 424, 510
Mph1103I	ATGCAT	2 cut(s)	323, 464
MseI	TTAA	2 cut(s)	282, 383
MslI	CAYNNNNRTG	2 cut(s)	410, 594
MspI	CCGG	2 cut(s)	334, 608
MunI	CAATTG	3 cut(s)	134, 207, 423
MwoI	GCNNNNNNNGC	1 cut(s)	222
NcoI	CCATGG	1 cut(s)	245
NdeI	CATATG	1 cut(s)	317
NdeII	GATC	3 cut(s)	6, 78, 477
NlaIII	CATG	2 cut(s)	95, 249
NlaIV	GGNNCC	1 cut(s)	487
NmeAIII	GCCGAG	1 cut(s)	520
NmuCI	GTSAC	1 cut(s)	179
NsiI	ATGCAT	2 cut(s)	323, 464
NspV	TTCGAA	1 cut(s)	573
OliI	CACNNNNGTG	2 cut(s)	410, 594
PfeI	GAWTC	5 cut(s)	21, 139, 387, 580, 611
PkrI	GCNGC	2 cut(s)	205, 485
Ple19I	CGATCG	1 cut(s)	81
PleI	GAGTC	3 cut(s)	516, 534, 534
PpsI	GAGTC	3 cut(s)	516, 534, 534
Psp1406I	AACGTT	1 cut(s)	380
PspN4I	GGNNCC	1 cut(s)	487
PsuI	RGATCY	1 cut(s)	6
PvuI	CGATCG	1 cut(s)	81
RsaI	GTAC	1 cut(s)	440
RsaNI	GTAC	1 cut(s)	439
RseI	CAYNNNNRTG	2 cut(s)	410, 594
SaqAI	TTAA	2 cut(s)	282, 383
SatI	GCNGC	2 cut(s)	204, 484
Sau3AI	GATC	3 cut(s)	6, 78, 477
SchI	GAGTC	3 cut(s)	517, 534, 535
SetI	ASST	9 cut(s)	104, 186, 205, 383, 453, 477, 507, 520, 598
SfaNI	GCATC	2 cut(s)	120, 330
SfuI	TTCGAA	1 cut(s)	573
SmiMI	CAYNNNNRTG	2 cut(s)	410, 594
SpeI	ACTAGT	1 cut(s)	409
Sse9I	AATT	5 cut(s)	134, 207, 259, 423, 575
SsiI	CCGC	3 cut(s)	364, 483, 544
SspMI	CTAG	1 cut(s)	410
StyI	CCWWGG	1 cut(s)	245
TaaI	ACNGT	2 cut(s)	88, 443
TaiI	ACGT	3 cut(s)	186, 383, 598
TaqI	TCGA	2 cut(s)	556, 573
TaqII	GACCGA	1 cut(s)	552
TasI	AATT	5 cut(s)	134, 207, 259, 423, 575
TatI	WGTACW	1 cut(s)	438
TauI	GCSGC	1 cut(s)	486
TfiI	GAWTC	5 cut(s)	21, 139, 387, 580, 611
Tru1I	TTAA	2 cut(s)	282, 383
Tru9I	TTAA	2 cut(s)	282, 383
TscAI	CASTG	1 cut(s)	331
TseFI	GTSAC	1 cut(s)	179
TseI	GCWGC	1 cut(s)	203
Tsp45I	GTSAC	1 cut(s)	179
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	331
XmiI	GTMKAC	1 cut(s)	511
XspI	CTAG	1 cut(s)	410
Zsp2I	ATGCAT	2 cut(s)	323, 464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.