Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001427.1

Orthogroup ID

OG0000142

Physical Location & Seq

Genomic Coordinates Forward (+)

5006 .. 5596

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001427.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

atggagtcgacttctcttcctcctcctcatcaacttccatggcttctcctcgatgctcctcatcccttctacatccaaaaccaatgctttcgcagcggtcgagctgttcccagaactttcgaatcaaaccccaaaactttacattatgagcggaattgtgttgggtcggtagaggggtggttgatcatgacggagagcattaaaagctctcccattgtcaacctcttcatggatccactatccaatgcccgagtcgctttcccatcacagtccacaattaggtctcccgaaaaccatagacacgatttcttccacaaagtagtagcctcttcggccccaatgggacagcagcgctgccttgtggcaggcattgtggccggccctgtagtggattgcattgaagtacgtcacgatttggctctttgtaggctcaatcataaatcatggaccatcattaaggttgcagaggtggaggatcacgagttattattctgcgacatagaaataattgatcgaaaattatatgccgcaacgaataacatgcttatggtgtttcacatcaaagacacactactagaattttgttcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010468 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030684 GO:0030686 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070545 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904 GO:2000232

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT_2 Pescadillo_N

Protein Analysis

196

Amino Acids

22.28

Weight (kDa)

6.35

Isoelectric Point (pI)

52.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000142)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica	MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica	Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis	pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis	RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata	RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora	Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa	Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha	Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana	Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	151
AccI	GTMKAC	1 cut(s)	8
AciI	CCGC	3 cut(s)	96, 151, 528
AclWI	GGATC	3 cut(s)	227, 240, 483
AcoI	YGGCCR	1 cut(s)	375
AcsI	RAATTY	1 cut(s)	578
AfaI	GTAC	1 cut(s)	405
AfeI	AGCGCT	1 cut(s)	353
AfiI	CCNNNNNNNGG	3 cut(s)	229, 279, 388
AgsI	TTSAA	1 cut(s)	401
AluBI	AGCT	2 cut(s)	104, 207
AluI	AGCT	2 cut(s)	104, 207
Alw26I	GTCTC	1 cut(s)	288
AlwI	GGATC	3 cut(s)	227, 240, 483
Ama87I	CYCGRG	1 cut(s)	249
Aor51HI	AGCGCT	1 cut(s)	353
AoxI	GGCC	3 cut(s)	333, 375, 379
ApeKI	GCWGC	3 cut(s)	93, 349, 354
ApoI	RAATTY	1 cut(s)	578
AspLEI	GCGC	1 cut(s)	354
AspS9I	GGNCC	3 cut(s)	334, 380, 447
AsuII	TTCGAA	1 cut(s)	120
AvaI	CYCGRG	1 cut(s)	249
AvaII	GGWCC	1 cut(s)	447
BamHI	GGATCC	1 cut(s)	232
BauI	CACGAG	1 cut(s)	479
BbvI	GCAGC	3 cut(s)	105, 341, 361
BccI	CCATC	2 cut(s)	271, 458
BcgI	CGANNNNNNTGC	2 cut(s)	523, 557
BclI	TGATCA	1 cut(s)	183
BcoDI	GTCTC	1 cut(s)	288
BfaI	CTAG	1 cut(s)	575
BfmI	CTRYAG	1 cut(s)	384
BfoI	RGCGCY	1 cut(s)	355
BglI	GCCNNNNNGGC	1 cut(s)	332
BisI	GCNGC	4 cut(s)	94, 350, 355, 528
BlsI	GCNGC	4 cut(s)	95, 351, 356, 529
Bme18I	GGWCC	1 cut(s)	447
BmeT110I	CYCGRG	1 cut(s)	249
BmgT120I	GGNCC	3 cut(s)	334, 380, 447
BmiI	GGNNCC	2 cut(s)	234, 336
BmsI	GCATC	1 cut(s)	43
Bpu14I	TTCGAA	1 cut(s)	120
BsaI	GGTCTC	1 cut(s)	288
BsaJI	CCNNGG	1 cut(s)	38
Bsc4I	CCNNNNNNNGG	3 cut(s)	229, 279, 388
Bse118I	RCCGGY	1 cut(s)	377
BseDI	CCNNGG	1 cut(s)	38
BseGI	GGATG	2 cut(s)	61, 72
BseLI	CCNNNNNNNGG	3 cut(s)	229, 279, 388
BseRI	GAGGAG	4 cut(s)	12, 15, 38, 48
BseXI	GCAGC	3 cut(s)	105, 341, 361
Bsh1285I	CGRYCG	1 cut(s)	100
BshFI	GGCC	3 cut(s)	335, 377, 381
BsiEI	CGRYCG	1 cut(s)	100
BsiHKCI	CYCGRG	1 cut(s)	249
BsiSI	CCGG	1 cut(s)	378
BslFI	GGGAC	1 cut(s)	357
BslI	CCNNNNNNNGG	3 cut(s)	229, 279, 388
BsmAI	GTCTC	1 cut(s)	288
BsmFI	GGGAC	1 cut(s)	357
BsnI	GGCC	3 cut(s)	335, 377, 381
Bso31I	GGTCTC	1 cut(s)	288
BsoBI	CYCGRG	1 cut(s)	249
Bsp119I	TTCGAA	1 cut(s)	120
Bsp143I	GATC	4 cut(s)	183, 232, 475, 511
Bsp19I	CCATGG	1 cut(s)	38
BspACI	CCGC	3 cut(s)	96, 151, 528
BspANI	GGCC	3 cut(s)	335, 377, 381
BspHI	TCATGA	1 cut(s)	186
BspLI	GGNNCC	2 cut(s)	234, 336
BspPI	GGATC	3 cut(s)	227, 240, 483
BspT104I	TTCGAA	1 cut(s)	120
BspTNI	GGTCTC	1 cut(s)	288
BsrBI	CCGCTC	1 cut(s)	151
BsrFI	RCCGGY	1 cut(s)	377
BssAI	RCCGGY	1 cut(s)	377
BssECI	CCNNGG	1 cut(s)	38
BssMI	GATC	4 cut(s)	183, 232, 475, 511
BssSI	CACGAG	1 cut(s)	479
BssT1I	CCWWGG	1 cut(s)	38
Bst2BI	CACGAG	1 cut(s)	479
Bst4CI	ACNGT	1 cut(s)	270
Bst6I	CTCTTC	3 cut(s)	21, 230, 334
BstBI	TTCGAA	1 cut(s)	120
BstC8I	GCNNGC	2 cut(s)	367, 379
BstDSI	CCRYGG	1 cut(s)	38
BstF5I	GGATG	2 cut(s)	61, 72
BstH2I	RGCGCY	1 cut(s)	355
BstHHI	GCGC	1 cut(s)	354
BstKTI	GATC	4 cut(s)	186, 235, 478, 514
BstMAI	GTCTC	1 cut(s)	288
BstMBI	GATC	4 cut(s)	183, 232, 475, 511
BstMCI	CGRYCG	1 cut(s)	100
BstMWI	GCNNNNNNNGC	4 cut(s)	93, 204, 254, 332
BstNSI	RCATGY	1 cut(s)	544
BstSFI	CTRYAG	1 cut(s)	384
BstV1I	GCAGC	3 cut(s)	105, 341, 361
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
BsuRI	GGCC	3 cut(s)	335, 377, 381
BtgI	CCRYGG	1 cut(s)	38
BtsCI	GGATG	2 cut(s)	61, 72
Cac8I	GCNNGC	2 cut(s)	367, 379
CciI	TCATGA	1 cut(s)	186
CfoI	GCGC	1 cut(s)	354
Cfr10I	RCCGGY	1 cut(s)	377
Cfr13I	GGNCC	3 cut(s)	334, 380, 447
Csp6I	GTAC	1 cut(s)	404
CviAII	CATG	5 cut(s)	39, 187, 229, 444, 541
CviJI	RGCY	9 cut(s)	43, 104, 207, 326, 335, 377, 381, 419, 430
CviKI_1	RGCY	9 cut(s)	43, 104, 207, 326, 335, 377, 381, 419, 430
CviQI	GTAC	1 cut(s)	404
DpnI	GATC	4 cut(s)	185, 234, 477, 513
DpnII	GATC	4 cut(s)	183, 232, 475, 511
EaeI	YGGCCR	1 cut(s)	375
Eam1104I	CTCTTC	3 cut(s)	21, 230, 334
EarI	CTCTTC	3 cut(s)	21, 230, 334
Eco130I	CCWWGG	1 cut(s)	38
Eco31I	GGTCTC	1 cut(s)	288
Eco47I	GGWCC	1 cut(s)	447
Eco47III	AGCGCT	1 cut(s)	353
Eco88I	CYCGRG	1 cut(s)	249
EcoT14I	CCWWGG	1 cut(s)	38
ErhI	CCWWGG	1 cut(s)	38
FaeI	CATG	5 cut(s)	42, 190, 232, 447, 544
FaqI	GGGAC	1 cut(s)	357
FatI	CATG	5 cut(s)	38, 186, 228, 443, 540
FbaI	TGATCA	1 cut(s)	183
FblI	GTMKAC	1 cut(s)	8
Fnu4HI	GCNGC	4 cut(s)	94, 350, 355, 528
FokI	GGATG	2 cut(s)	48, 59
FseI	GGCCGGCC	1 cut(s)	381
Fsp4HI	GCNGC	4 cut(s)	94, 350, 355, 528
FspBI	CTAG	1 cut(s)	575
GlaI	GCGC	1 cut(s)	353
GluI	GCNGC	4 cut(s)	94, 350, 355, 528
HaeII	RGCGCY	1 cut(s)	355
HaeIII	GGCC	3 cut(s)	335, 377, 381
HapII	CCGG	1 cut(s)	378
HhaI	GCGC	1 cut(s)	354
Hin1II	CATG	5 cut(s)	42, 190, 232, 447, 544
Hin6I	GCGC	1 cut(s)	352
HinP1I	GCGC	1 cut(s)	352
HincII	GTYRAC	2 cut(s)	9, 220
HindII	GTYRAC	2 cut(s)	9, 220
HinfI	GANTC	3 cut(s)	5, 122, 252
HpaII	CCGG	1 cut(s)	378
Hpy166II	GTNNAC	3 cut(s)	9, 220, 273
Hpy188III	TCNNGA	4 cut(s)	187, 287, 410, 479
Hpy8I	GTNNAC	3 cut(s)	9, 220, 273
HpyAV	CCTTC	1 cut(s)	76
HpyCH4III	ACNGT	1 cut(s)	270
HpyCH4IV	ACGT	1 cut(s)	406
HpyCH4V	TGCA	2 cut(s)	396, 464
HpyF10VI	GCNNNNNNNGC	4 cut(s)	93, 204, 254, 332
HpySE526I	ACGT	1 cut(s)	406
Hsp92II	CATG	5 cut(s)	42, 190, 232, 447, 544
HspAI	GCGC	1 cut(s)	352
KroI	GCCGGC	1 cut(s)	377
KroNI	GCCGGC	1 cut(s)	379
Ksp22I	TGATCA	1 cut(s)	183
Kzo9I	GATC	4 cut(s)	183, 232, 475, 511
LmnI	GCTCC	1 cut(s)	61
LpnPI	CCDG	4 cut(s)	124, 351, 391, 396
Lsp1109I	GCAGC	3 cut(s)	105, 341, 361
LweI	GCATC	1 cut(s)	43
MaeI	CTAG	1 cut(s)	575
MaeII	ACGT	1 cut(s)	406
MaeIII	GTNAC	1 cut(s)	407
MalI	GATC	4 cut(s)	185, 234, 477, 513
MbiI	CCGCTC	1 cut(s)	151
MboI	GATC	4 cut(s)	183, 232, 475, 511
MboII	GAAGA	4 cut(s)	8, 217, 301, 321
MflI	RGATCY	1 cut(s)	232
MluCI	AATT	5 cut(s)	154, 276, 507, 518, 578
MlyI	GAGTC	2 cut(s)	14, 261
MroNI	GCCGGC	1 cut(s)	377
MseI	TTAA	2 cut(s)	201, 456
MslI	CAYNNNNRTG	1 cut(s)	545
MspA1I	CMGCKG	1 cut(s)	96
MspI	CCGG	1 cut(s)	378
MwoI	GCNNNNNNNGC	4 cut(s)	93, 204, 254, 332
NaeI	GCCGGC	1 cut(s)	379
NcoI	CCATGG	1 cut(s)	38
NdeII	GATC	4 cut(s)	183, 232, 475, 511
NgoMIV	GCCGGC	1 cut(s)	377
NlaIII	CATG	5 cut(s)	42, 190, 232, 447, 544
NlaIV	GGNNCC	2 cut(s)	234, 336
NmuCI	GTSAC	1 cut(s)	407
NspI	RCATGY	1 cut(s)	544
NspV	TTCGAA	1 cut(s)	120
PagI	TCATGA	1 cut(s)	186
PcsI	WCGNNNNNNNCGW	1 cut(s)	97
PdiI	GCCGGC	1 cut(s)	379
PfeI	GAWTC	1 cut(s)	122
PkrI	GCNGC	4 cut(s)	95, 351, 356, 529
PleI	GAGTC	2 cut(s)	13, 260
PpsI	GAGTC	2 cut(s)	13, 260
PspN4I	GGNNCC	2 cut(s)	234, 336
PspPI	GGNCC	3 cut(s)	334, 380, 447
PsuI	RGATCY	1 cut(s)	232
RigI	GGCCGGCC	1 cut(s)	381
RsaI	GTAC	1 cut(s)	405
RsaNI	GTAC	1 cut(s)	404
RseI	CAYNNNNRTG	1 cut(s)	545
SalI	GTCGAC	1 cut(s)	7
SaqAI	TTAA	2 cut(s)	201, 456
SatI	GCNGC	4 cut(s)	94, 350, 355, 528
Sau3AI	GATC	4 cut(s)	183, 232, 475, 511
Sau96I	GGNCC	3 cut(s)	334, 380, 447
SchI	GAGTC	2 cut(s)	14, 261
SetI	ASST	7 cut(s)	106, 209, 225, 284, 409, 462, 471
SfaNI	GCATC	1 cut(s)	43
SfcI	CTRYAG	1 cut(s)	384
SfuI	TTCGAA	1 cut(s)	120
SinI	GGWCC	1 cut(s)	447
SmiMI	CAYNNNNRTG	1 cut(s)	545
Sse9I	AATT	5 cut(s)	154, 276, 507, 518, 578
SsiI	CCGC	3 cut(s)	96, 151, 528
SspMI	CTAG	1 cut(s)	575
StyI	CCWWGG	1 cut(s)	38
TaaI	ACNGT	1 cut(s)	270
TaiI	ACGT	1 cut(s)	409
TaqI	TCGA	5 cut(s)	8, 51, 100, 120, 514
TasI	AATT	5 cut(s)	154, 276, 507, 518, 578
TauI	GCSGC	1 cut(s)	530
TfiI	GAWTC	1 cut(s)	122
Tru1I	TTAA	2 cut(s)	201, 456
Tru9I	TTAA	2 cut(s)	201, 456
TseFI	GTSAC	1 cut(s)	407
TseI	GCWGC	3 cut(s)	93, 349, 354
Tsp45I	GTSAC	1 cut(s)	407
TspDTI	ATGAA	2 cut(s)	217, 576
TspGWI	ACGGA	1 cut(s)	206
VpaK11BI	GGWCC	1 cut(s)	447
XapI	RAATTY	1 cut(s)	578
XceI	RCATGY	1 cut(s)	544
XmiI	GTMKAC	1 cut(s)	8
XspI	CTAG	1 cut(s)	575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.