Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 761 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 113 |
| AccBSI | CCGCTC | 1 cut(s) | 427 |
| AciI | CCGC | 2 cut(s) | 427, 454 |
| AclWI | GGATC | 1 cut(s) | 331 |
| AcoI | YGGCCR | 2 cut(s) | 467, 505 |
| AcsI | RAATTY | 2 cut(s) | 89, 630 |
| AfaI | GTAC | 3 cut(s) | 210, 294, 753 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 113, 453 |
| AflIII | ACRYGT | 1 cut(s) | 346 |
| AgsI | TTSAA | 4 cut(s) | 103, 380, 551, 559 |
| AjiI | CACGTC | 1 cut(s) | 349 |
| AjnI | CCWGG | 4 cut(s) | 172, 225, 296, 507 |
| AluBI | AGCT | 1 cut(s) | 538 |
| AluI | AGCT | 1 cut(s) | 538 |
| Alw21I | GWGCWC | 1 cut(s) | 540 |
| Alw26I | GTCTC | 1 cut(s) | 685 |
| AlwI | GGATC | 1 cut(s) | 331 |
| AoxI | GGCC | 2 cut(s) | 467, 505 |
| ApoI | RAATTY | 2 cut(s) | 89, 630 |
| AspS9I | GGNCC | 1 cut(s) | 170 |
| AsuHPI | GGTGA | 1 cut(s) | 432 |
| AvaII | GGWCC | 1 cut(s) | 170 |
| AxyI | CCTNAGG | 1 cut(s) | 525 |
| BalI | TGGCCA | 2 cut(s) | 469, 507 |
| BanII | GRGCYC | 1 cut(s) | 540 |
| Bbv12I | GWGCWC | 1 cut(s) | 540 |
| BbvCI | CCTCAGC | 1 cut(s) | 285 |
| BccI | CCATC | 2 cut(s) | 4, 30 |
| BceAI | ACGGC | 2 cut(s) | 448, 725 |
| BciT130I | CCWGG | 4 cut(s) | 174, 227, 298, 509 |
| BclI | TGATCA | 1 cut(s) | 42 |
| BcoDI | GTCTC | 1 cut(s) | 685 |
| BfaI | CTAG | 1 cut(s) | 728 |
| Bme1390I | CCNGG | 4 cut(s) | 174, 227, 298, 509 |
| Bme18I | GGWCC | 1 cut(s) | 170 |
| BmgBI | CACGTC | 1 cut(s) | 349 |
| BmgT120I | GGNCC | 1 cut(s) | 170 |
| BmiI | GGNNCC | 1 cut(s) | 231 |
| BmrFI | CCNGG | 4 cut(s) | 174, 227, 298, 509 |
| BmrI | ACTGGG | 1 cut(s) | 327 |
| BmsI | GCATC | 3 cut(s) | 54, 117, 171 |
| BmuI | ACTGGG | 1 cut(s) | 327 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 114, 146 |
| Bpu10I | CCTNAGC | 1 cut(s) | 285 |
| BsaBI | GATNNNNATC | 1 cut(s) | 47 |
| BsaJI | CCNNGG | 3 cut(s) | 296, 297, 464 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 113, 453 |
| Bse1I | ACTGG | 2 cut(s) | 290, 322 |
| Bse21I | CCTNAGG | 1 cut(s) | 525 |
| Bse8I | GATNNNNATC | 1 cut(s) | 47 |
| BseBI | CCWGG | 4 cut(s) | 174, 227, 298, 509 |
| BseDI | CCNNGG | 3 cut(s) | 296, 297, 464 |
| BseGI | GGATG | 3 cut(s) | 15, 41, 642 |
| BseJI | GATNNNNATC | 1 cut(s) | 47 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 113, 453 |
| BseMII | CTCAG | 2 cut(s) | 299, 680 |
| BseNI | ACTGG | 2 cut(s) | 290, 322 |
| BseRI | GAGGAG | 1 cut(s) | 122 |
| Bsh1285I | CGRYCG | 1 cut(s) | 121 |
| BshFI | GGCC | 2 cut(s) | 469, 507 |
| BsiEI | CGRYCG | 1 cut(s) | 121 |
| BsiHKAI | GWGCWC | 1 cut(s) | 540 |
| BslFI | GGGAC | 1 cut(s) | 54 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 113, 453 |
| BsmAI | GTCTC | 1 cut(s) | 685 |
| BsmFI | GGGAC | 1 cut(s) | 54 |
| BsmI | GAATGC | 1 cut(s) | 629 |
| BsnI | GGCC | 2 cut(s) | 469, 507 |
| Bsp1286I | GDGCHC | 1 cut(s) | 540 |
| Bsp143I | GATC | 4 cut(s) | 42, 48, 118, 336 |
| BspACI | CCGC | 2 cut(s) | 427, 454 |
| BspANI | GGCC | 2 cut(s) | 469, 507 |
| BspCNI | CTCAG | 2 cut(s) | 298, 681 |
| BspHI | TCATGA | 2 cut(s) | 45, 277 |
| BspLI | GGNNCC | 1 cut(s) | 231 |
| BspPI | GGATC | 1 cut(s) | 331 |
| BsrBI | CCGCTC | 1 cut(s) | 427 |
| BsrI | ACTGG | 2 cut(s) | 290, 322 |
| BssECI | CCNNGG | 3 cut(s) | 296, 297, 464 |
| BssMI | GATC | 4 cut(s) | 42, 48, 118, 336 |
| Bst2UI | CCWGG | 4 cut(s) | 174, 227, 298, 509 |
| Bst4CI | ACNGT | 1 cut(s) | 56 |
| Bst6I | CTCTTC | 2 cut(s) | 208, 644 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 633 |
| BstC8I | GCNNGC | 1 cut(s) | 471 |
| BstDEI | CTNAG | 4 cut(s) | 285, 525, 541, 689 |
| BstDSI | CCRYGG | 1 cut(s) | 464 |
| BstF5I | GGATG | 3 cut(s) | 15, 41, 642 |
| BstKTI | GATC | 4 cut(s) | 45, 51, 121, 339 |
| BstMAI | GTCTC | 1 cut(s) | 685 |
| BstMBI | GATC | 4 cut(s) | 42, 48, 118, 336 |
| BstMCI | CGRYCG | 1 cut(s) | 121 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 424, 460, 633 |
| BstNI | CCWGG | 4 cut(s) | 174, 227, 298, 509 |
| BstSCI | CCNGG | 4 cut(s) | 172, 225, 296, 507 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 297 |
| Bsu36I | CCTNAGG | 1 cut(s) | 525 |
| BsuRI | GGCC | 2 cut(s) | 469, 507 |
| BtgI | CCRYGG | 1 cut(s) | 464 |
| BtrI | CACGTC | 1 cut(s) | 349 |
| BtsCI | GGATG | 3 cut(s) | 15, 41, 642 |
| BtsI | GCAGTG | 1 cut(s) | 157 |
| BtsIMutI | CAGTG | 2 cut(s) | 61, 157 |
| Cac8I | GCNNGC | 1 cut(s) | 471 |
| CciI | TCATGA | 2 cut(s) | 45, 277 |
| Cfr13I | GGNCC | 1 cut(s) | 170 |
| CseI | GACGC | 1 cut(s) | 56 |
| Csp6I | GTAC | 3 cut(s) | 209, 293, 752 |
| CviAII | CATG | 4 cut(s) | 46, 153, 234, 278 |
| CviQI | GTAC | 3 cut(s) | 209, 293, 752 |
| DdeI | CTNAG | 4 cut(s) | 285, 525, 541, 689 |
| DpnI | GATC | 4 cut(s) | 44, 50, 120, 338 |
| DpnII | GATC | 4 cut(s) | 42, 48, 118, 336 |
| DraI | TTTAAA | 1 cut(s) | 82 |
| EaeI | YGGCCR | 2 cut(s) | 467, 505 |
| Eam1104I | CTCTTC | 2 cut(s) | 208, 644 |
| EarI | CTCTTC | 2 cut(s) | 208, 644 |
| Ecl136II | GAGCTC | 1 cut(s) | 538 |
| Eco24I | GRGCYC | 1 cut(s) | 540 |
| Eco47I | GGWCC | 1 cut(s) | 170 |
| Eco53kI | GAGCTC | 1 cut(s) | 538 |
| Eco81I | CCTNAGG | 1 cut(s) | 525 |
| EcoICRI | GAGCTC | 1 cut(s) | 538 |
| EcoRI | GAATTC | 1 cut(s) | 89 |
| EcoRII | CCWGG | 4 cut(s) | 172, 225, 296, 507 |
| EcoT38I | GRGCYC | 1 cut(s) | 540 |
| FaeI | CATG | 4 cut(s) | 49, 156, 237, 281 |
| FaqI | GGGAC | 1 cut(s) | 54 |
| FatI | CATG | 4 cut(s) | 45, 152, 233, 277 |
| FbaI | TGATCA | 1 cut(s) | 42 |
| FokI | GGATG | 3 cut(s) | 22, 48, 629 |
| FriOI | GRGCYC | 1 cut(s) | 540 |
| FspBI | CTAG | 1 cut(s) | 728 |
| HaeIII | GGCC | 2 cut(s) | 469, 507 |
| HgaI | GACGC | 1 cut(s) | 56 |
| Hin1II | CATG | 4 cut(s) | 49, 156, 237, 281 |
| HinfI | GANTC | 1 cut(s) | 594 |
| HphI | GGTGA | 1 cut(s) | 432 |
| Hpy188I | TCNGA | 1 cut(s) | 690 |
| Hpy188III | TCNNGA | 2 cut(s) | 46, 278 |
| HpyAV | CCTTC | 2 cut(s) | 158, 362 |
| HpyCH4III | ACNGT | 1 cut(s) | 56 |
| HpyCH4IV | ACGT | 1 cut(s) | 348 |
| HpyCH4V | TGCA | 5 cut(s) | 140, 162, 255, 627, 725 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 424, 460, 633 |
| HpyF3I | CTNAG | 4 cut(s) | 285, 525, 541, 689 |
| HpySE526I | ACGT | 1 cut(s) | 348 |
| Hsp92II | CATG | 4 cut(s) | 49, 156, 237, 281 |
| Ksp22I | TGATCA | 1 cut(s) | 42 |
| Kzo9I | GATC | 4 cut(s) | 42, 48, 118, 336 |
| LmnI | GCTCC | 2 cut(s) | 135, 229 |
| LweI | GCATC | 3 cut(s) | 54, 117, 171 |
| MaeI | CTAG | 1 cut(s) | 728 |
| MaeII | ACGT | 1 cut(s) | 348 |
| MaeIII | GTNAC | 1 cut(s) | 795 |
| MalI | GATC | 4 cut(s) | 44, 50, 120, 338 |
| MbiI | CCGCTC | 1 cut(s) | 427 |
| MboI | GATC | 4 cut(s) | 42, 48, 118, 336 |
| MboII | GAAGA | 5 cut(s) | 85, 88, 91, 195, 631 |
| MhlI | GDGCHC | 1 cut(s) | 540 |
| MlsI | TGGCCA | 2 cut(s) | 469, 507 |
| MluCI | AATT | 7 cut(s) | 89, 192, 381, 546, 630, 702, 764 |
| MluNI | TGGCCA | 2 cut(s) | 469, 507 |
| MlyI | GAGTC | 1 cut(s) | 588 |
| MnlI | CCTC | 6 cut(s) | 25, 143, 211, 294, 565, 647 |
| Mox20I | TGGCCA | 2 cut(s) | 469, 507 |
| MscI | TGGCCA | 2 cut(s) | 469, 507 |
| MseI | TTAA | 3 cut(s) | 81, 303, 615 |
| Msp20I | TGGCCA | 2 cut(s) | 469, 507 |
| MspR9I | CCNGG | 4 cut(s) | 174, 227, 298, 509 |
| Mva1269I | GAATGC | 1 cut(s) | 629 |
| MvaI | CCWGG | 4 cut(s) | 174, 227, 298, 509 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 424, 460, 633 |
| NdeII | GATC | 4 cut(s) | 42, 48, 118, 336 |
| NlaIII | CATG | 4 cut(s) | 49, 156, 237, 281 |
| NlaIV | GGNNCC | 1 cut(s) | 231 |
| NmeAIII | GCCGAG | 1 cut(s) | 559 |
| PagI | TCATGA | 2 cut(s) | 45, 277 |
| PasI | CCCWGGG | 1 cut(s) | 297 |
| PctI | GAATGC | 1 cut(s) | 629 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 113 |
| Ple19I | CGATCG | 1 cut(s) | 121 |
| PleI | GAGTC | 1 cut(s) | 588 |
| PpsI | GAGTC | 1 cut(s) | 588 |
| PsiI | TTATAA | 1 cut(s) | 761 |
| Psp124BI | GAGCTC | 1 cut(s) | 540 |
| Psp6I | CCWGG | 4 cut(s) | 172, 225, 296, 507 |
| PspGI | CCWGG | 4 cut(s) | 172, 225, 296, 507 |
| PspN4I | GGNNCC | 1 cut(s) | 231 |
| PspPI | GGNCC | 1 cut(s) | 170 |
| PvuI | CGATCG | 1 cut(s) | 121 |
| RsaI | GTAC | 3 cut(s) | 210, 294, 753 |
| RsaNI | GTAC | 3 cut(s) | 209, 293, 752 |
| SacI | GAGCTC | 1 cut(s) | 540 |
| SaqAI | TTAA | 3 cut(s) | 81, 303, 615 |
| Sau3AI | GATC | 4 cut(s) | 42, 48, 118, 336 |
| Sau96I | GGNCC | 1 cut(s) | 170 |
| SchI | GAGTC | 1 cut(s) | 588 |
| ScrFI | CCNGG | 4 cut(s) | 174, 227, 298, 509 |
| SduI | GDGCHC | 1 cut(s) | 540 |
| SetI | ASST | 9 cut(s) | 79, 150, 286, 351, 531, 540, 576, 669, 797 |
| SfaNI | GCATC | 3 cut(s) | 54, 117, 171 |
| SinI | GGWCC | 1 cut(s) | 170 |
| Sse9I | AATT | 7 cut(s) | 89, 192, 381, 546, 630, 702, 764 |
| SsiI | CCGC | 2 cut(s) | 427, 454 |
| SspMI | CTAG | 1 cut(s) | 728 |
| SstI | GAGCTC | 1 cut(s) | 540 |
| StyD4I | CCNGG | 4 cut(s) | 172, 225, 296, 507 |
| TaaI | ACNGT | 1 cut(s) | 56 |
| TaiI | ACGT | 1 cut(s) | 351 |
| TaqI | TCGA | 2 cut(s) | 51, 121 |
| TasI | AATT | 7 cut(s) | 89, 192, 381, 546, 630, 702, 764 |
| TatI | WGTACW | 1 cut(s) | 751 |
| Tru1I | TTAA | 3 cut(s) | 81, 303, 615 |
| Tru9I | TTAA | 3 cut(s) | 81, 303, 615 |
| TscAI | CASTG | 2 cut(s) | 61, 164 |
| TspDTI | ATGAA | 5 cut(s) | 17, 294, 447, 488, 631 |
| TspGWI | ACGGA | 1 cut(s) | 172 |
| TspRI | CASTG | 2 cut(s) | 61, 164 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 113 |
| VpaK11BI | GGWCC | 1 cut(s) | 170 |
| XapI | RAATTY | 2 cut(s) | 89, 630 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 164 |
| XspI | CTAG | 1 cut(s) | 728 |