Rh3DG185000

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000142
Physical Location & Seq
Reverse (-)
16395324 .. 16401372
6049 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG185000.1

Sequence Viewer

Length: 513 bp
ATGCGGAGGAAAGCTTCACTTCGATGCTTCCTGGCAAAGAGGAAGGATATGATCAACGACATGTACCAACTAAGAAGCCTCAATTCTTTTGGCCCTGCAAGGCCAGCAGTTGAAAACAAGTCATGGCTAGGCTTGGTTGCATATCGTTGTTTCTCGTTAACGAGTATGAATAGCAGAAAACGCACAATAGATGACTACAACAAGTGGTCCAAGCATCTTCCTGATGAATTGTTTGAAATAATTGTGAAGCGTCTAACCCTAGTCGATTTAAGAAGATTCGCTGCTGTGTGTCCATCTTGGAGAAGGGTATCATCACAATGGTTTCAACGAGTAACCGGACTTCCATGGCTCTTGAATTCGGCCGAGTTTCTAGACTCAGAAGATGTGAAATATAGTCTTTACAGTCCAAGTGAAGACAGAGTCTATAACCTCAAGTTTCGAAGAGAAGATAATAATATGGGTCACGTAGTAATCAATCAATACGGTGCTCGGGCTCAGTTAATGGTTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

170

Amino Acids

20.06

Weight (kDa)

9.96

Isoelectric Point (pI)

55.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 72 - 104 3.7e-07 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000142)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 4
AcoI YGGCCR 1 cut(s) 360
AcsI RAATTY 1 cut(s) 355
AfaI GTAC 1 cut(s) 65
AflIII ACRYGT 1 cut(s) 60
AgsI TTSAA 4 cut(s) 113, 236, 326, 355
AjnI CCWGG 1 cut(s) 30
AluBI AGCT 1 cut(s) 14
AluI AGCT 1 cut(s) 14
Alw21I GWGCWC 1 cut(s) 490
Ama87I CYCGRG 1 cut(s) 489
AoxI GGCC 3 cut(s) 91, 101, 360
ApeKI GCWGC 1 cut(s) 281
ApoI RAATTY 1 cut(s) 355
AspS9I GGNCC 2 cut(s) 92, 207
AsuII TTCGAA 1 cut(s) 439
AvaI CYCGRG 1 cut(s) 489
AvaII GGWCC 1 cut(s) 207
BanII GRGCYC 1 cut(s) 496
BarI GAAGNNNNNNTAC 2 cut(s) 324, 356
BbsI GAAGAC 1 cut(s) 420
Bbv12I GWGCWC 1 cut(s) 490
BbvI GCAGC 1 cut(s) 268
BccI CCATC 1 cut(s) 301
BciT130I CCWGG 1 cut(s) 32
BclI TGATCA 1 cut(s) 51
BfaI CTAG 3 cut(s) 128, 260, 371
BisI GCNGC 1 cut(s) 282
BlsI GCNGC 1 cut(s) 283
Bme1390I CCNGG 1 cut(s) 32
Bme18I GGWCC 1 cut(s) 207
BmeT110I CYCGRG 1 cut(s) 489
BmgT120I GGNCC 2 cut(s) 92, 207
BmrFI CCNGG 1 cut(s) 32
BmsI GCATC 2 cut(s) 14, 223
BpiI GAAGAC 1 cut(s) 420
Bpu14I TTCGAA 1 cut(s) 439
BpuEI CTTGAG 1 cut(s) 416
BsaAI YACGTR 1 cut(s) 466
BsaJI CCNNGG 1 cut(s) 344
BsaWI WCCGGW 1 cut(s) 335
BseBI CCWGG 1 cut(s) 32
BseDI CCNNGG 1 cut(s) 344
BseMII CTCAG 2 cut(s) 390, 509
BseX3I CGGCCG 1 cut(s) 360
BseXI GCAGC 1 cut(s) 268
Bsh1285I CGRYCG 1 cut(s) 363
BshFI GGCC 3 cut(s) 93, 103, 362
BsiEI CGRYCG 1 cut(s) 363
BsiHKAI GWGCWC 1 cut(s) 490
BsiHKCI CYCGRG 1 cut(s) 489
BsiSI CCGG 1 cut(s) 336
BsnI GGCC 3 cut(s) 93, 103, 362
BsoBI CYCGRG 1 cut(s) 489
Bsp119I TTCGAA 1 cut(s) 439
Bsp1286I GDGCHC 2 cut(s) 490, 496
Bsp143I GATC 1 cut(s) 51
Bsp19I CCATGG 1 cut(s) 344
BspACI CCGC 1 cut(s) 4
BspANI GGCC 3 cut(s) 93, 103, 362
BspCNI CTCAG 2 cut(s) 389, 508
BspT104I TTCGAA 1 cut(s) 439
BssECI CCNNGG 1 cut(s) 344
BssMI GATC 1 cut(s) 51
BssT1I CCWWGG 1 cut(s) 344
Bst2UI CCWGG 1 cut(s) 32
Bst4CI ACNGT 2 cut(s) 404, 485
Bst6I CTCTTC 1 cut(s) 436
BstBAI YACGTR 1 cut(s) 466
BstBI TTCGAA 1 cut(s) 439
BstC8I GCNNGC 1 cut(s) 105
BstDEI CTNAG 3 cut(s) 71, 376, 495
BstDSI CCRYGG 1 cut(s) 344
BstKTI GATC 1 cut(s) 54
BstMBI GATC 1 cut(s) 51
BstMCI CGRYCG 1 cut(s) 363
BstMWI GCNNNNNNNGC 2 cut(s) 104, 180
BstNI CCWGG 1 cut(s) 32
BstNSI RCATGY 1 cut(s) 64
BstSCI CCNGG 1 cut(s) 30
BstV1I GCAGC 1 cut(s) 268
BstV2I GAAGAC 1 cut(s) 420
BstZI CGGCCG 1 cut(s) 360
BsuRI GGCC 3 cut(s) 93, 103, 362
BtgI CCRYGG 1 cut(s) 344
Cac8I GCNNGC 1 cut(s) 105
Cfr13I GGNCC 2 cut(s) 92, 207
CseI GACGC 1 cut(s) 239
Csp6I GTAC 1 cut(s) 64
CviAII CATG 3 cut(s) 61, 123, 345
CviJI RGCY 9 cut(s) 14, 78, 93, 103, 127, 132, 349, 362, 494
CviKI_1 RGCY 9 cut(s) 14, 78, 93, 103, 127, 132, 349, 362, 494
CviQI GTAC 1 cut(s) 64
DdeI CTNAG 3 cut(s) 71, 376, 495
DpnI GATC 1 cut(s) 53
DpnII GATC 1 cut(s) 51
EaeI YGGCCR 1 cut(s) 360
EagI CGGCCG 1 cut(s) 360
Eam1104I CTCTTC 1 cut(s) 436
EarI CTCTTC 1 cut(s) 436
EclXI CGGCCG 1 cut(s) 360
Eco130I CCWWGG 1 cut(s) 344
Eco24I GRGCYC 1 cut(s) 496
Eco47I GGWCC 1 cut(s) 207
Eco52I CGGCCG 1 cut(s) 360
Eco88I CYCGRG 1 cut(s) 489
EcoRI GAATTC 1 cut(s) 355
EcoRII CCWGG 1 cut(s) 30
EcoT14I CCWWGG 1 cut(s) 344
EcoT38I GRGCYC 1 cut(s) 496
ErhI CCWWGG 1 cut(s) 344
FaeI CATG 3 cut(s) 64, 126, 348
FaiI YATR 9 cut(s) 50, 62, 124, 142, 167, 346, 393, 426, 458
FalI AAGNNNNNCTT 1 cut(s) 35
FatI CATG 3 cut(s) 60, 122, 344
FbaI TGATCA 1 cut(s) 51
Fnu4HI GCNGC 1 cut(s) 282
FriOI GRGCYC 1 cut(s) 496
Fsp4HI GCNGC 1 cut(s) 282
FspBI CTAG 3 cut(s) 128, 260, 371
GluI GCNGC 1 cut(s) 282
HaeIII GGCC 3 cut(s) 93, 103, 362
HapII CCGG 1 cut(s) 336
HgaI GACGC 1 cut(s) 239
Hin1II CATG 3 cut(s) 64, 126, 348
HincII GTYRAC 1 cut(s) 159
HindII GTYRAC 1 cut(s) 159
HindIII AAGCTT 1 cut(s) 12
HinfI GANTC 3 cut(s) 276, 374, 420
HpaI GTTAAC 1 cut(s) 159
HpaII CCGG 1 cut(s) 336
Hpy166II GTNNAC 1 cut(s) 159
Hpy188I TCNGA 1 cut(s) 379
Hpy188III TCNNGA 3 cut(s) 221, 352, 371
Hpy8I GTNNAC 1 cut(s) 159
HpyAV CCTTC 2 cut(s) 37, 297
HpyCH4III ACNGT 2 cut(s) 404, 485
HpyCH4IV ACGT 1 cut(s) 465
HpyCH4V TGCA 2 cut(s) 98, 140
HpyF10VI GCNNNNNNNGC 2 cut(s) 104, 180
HpyF3I CTNAG 3 cut(s) 71, 376, 495
HpySE526I ACGT 1 cut(s) 465
Hsp92II CATG 3 cut(s) 64, 126, 348
Ksp22I TGATCA 1 cut(s) 51
KspAI GTTAAC 1 cut(s) 159
Kzo9I GATC 1 cut(s) 51
LpnPI CCDG 6 cut(s) 17, 44, 108, 117, 234, 349
Lsp1109I GCAGC 1 cut(s) 268
LweI GCATC 2 cut(s) 14, 223
MaeI CTAG 3 cut(s) 128, 260, 371
MaeII ACGT 1 cut(s) 465
MaeIII GTNAC 2 cut(s) 331, 461
MalI GATC 1 cut(s) 53
MboI GATC 1 cut(s) 51
MboII GAAGA 6 cut(s) 209, 285, 392, 425, 453, 458
MhlI GDGCHC 2 cut(s) 490, 496
MluCI AATT 4 cut(s) 82, 227, 240, 355
MlyI GAGTC 2 cut(s) 368, 429
MnlI CCTC 3 cut(s) 33, 89, 440
MseI TTAA 4 cut(s) 158, 269, 500, 511
MslI CAYNNNNRTG 2 cut(s) 22, 316
MspI CCGG 1 cut(s) 336
MspR9I CCNGG 1 cut(s) 32
MvaI CCWGG 1 cut(s) 32
MwoI GCNNNNNNNGC 2 cut(s) 104, 180
NcoI CCATGG 1 cut(s) 344
NdeII GATC 1 cut(s) 51
NlaIII CATG 3 cut(s) 64, 126, 348
NmeAIII GCCGAG 1 cut(s) 388
NmuCI GTSAC 1 cut(s) 461
NspI RCATGY 1 cut(s) 64
NspV TTCGAA 1 cut(s) 439
PciI ACATGT 1 cut(s) 60
PfeI GAWTC 1 cut(s) 276
PflFI GACNNNGTC 1 cut(s) 419
PkrI GCNGC 1 cut(s) 283
PleI GAGTC 2 cut(s) 368, 428
PpsI GAGTC 2 cut(s) 368, 428
Ppu21I YACGTR 1 cut(s) 466
PscI ACATGT 1 cut(s) 60
Psp6I CCWGG 1 cut(s) 30
PspGI CCWGG 1 cut(s) 30
PspPI GGNCC 2 cut(s) 92, 207
PsyI GACNNNGTC 1 cut(s) 419
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
RseI CAYNNNNRTG 2 cut(s) 22, 316
SaqAI TTAA 4 cut(s) 158, 269, 500, 511
SatI GCNGC 1 cut(s) 282
Sau3AI GATC 1 cut(s) 51
Sau96I GGNCC 2 cut(s) 92, 207
SchI GAGTC 2 cut(s) 368, 429
ScrFI CCNGG 1 cut(s) 32
SduI GDGCHC 2 cut(s) 490, 496
SetI ASST 3 cut(s) 16, 432, 468
SfaNI GCATC 2 cut(s) 14, 223
SfuI TTCGAA 1 cut(s) 439
SinI GGWCC 1 cut(s) 207
SmiMI CAYNNNNRTG 2 cut(s) 22, 316
SmlI CTYRAG 1 cut(s) 431
SmoI CTYRAG 1 cut(s) 431
Sse9I AATT 4 cut(s) 82, 227, 240, 355
SsiI CCGC 1 cut(s) 4
SspMI CTAG 3 cut(s) 128, 260, 371
StyD4I CCNGG 1 cut(s) 30
StyI CCWWGG 1 cut(s) 344
TaaI ACNGT 2 cut(s) 404, 485
TaiI ACGT 1 cut(s) 468
TaqI TCGA 3 cut(s) 22, 264, 439
TasI AATT 4 cut(s) 82, 227, 240, 355
TfiI GAWTC 1 cut(s) 276
Tru1I TTAA 4 cut(s) 158, 269, 500, 511
Tru9I TTAA 4 cut(s) 158, 269, 500, 511
TseFI GTSAC 1 cut(s) 461
TseI GCWGC 1 cut(s) 281
Tsp45I GTSAC 1 cut(s) 461
TspDTI ATGAA 2 cut(s) 182, 240
Tth111I GACNNNGTC 1 cut(s) 419
VpaK11BI GGWCC 1 cut(s) 207
XapI RAATTY 1 cut(s) 355
XbaI TCTAGA 1 cut(s) 370
XceI RCATGY 1 cut(s) 64
XspI CTAG 3 cut(s) 128, 260, 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.