Rroxscaffold_6G00402940

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000142
Physical Location & Seq
Forward (+)
25406098 .. 25406635
538 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00402940.1

Sequence Viewer

Length: 357 bp
ATGGATGATAAAAGTGGTTGTAATCCTGTTTGGGTGAACTCGGAGAAGAATGATGTTGCTGAAGACGAAGTAGTCTTAGTCACCTTACACGGCGGTGATGACACCTCACTATCAAAGTTGAAGTCATTTACGACAACCATAGACGAGGCTTTTCTTGGACTTTATTGCGGAAAATTCTTCACCTGCCATGGTTCGTTGAATTGTGAGAATCTTTTAAATGGGAAATGGCCACTGGACTTCACACCGGAACTCCAAAATGACCGATCGAAAGAGCCAAAAAAAGGCCCCGACTCAACTACGGACTTAGAACTTGCACTACAATTAAAAGGCAAAAACAATATGCGCGAGGAGCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.18

Weight (kDa)

4.76

Isoelectric Point (pI)

20.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000142)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 191
AasI GACNNNNNNGTC 1 cut(s) 71
Acc36I ACCTGC 1 cut(s) 191
AccBSI CCGCTC 1 cut(s) 352
AccII CGCG 1 cut(s) 345
AciI CCGC 3 cut(s) 93, 168, 352
AcoI YGGCCR 1 cut(s) 227
AcsI RAATTY 1 cut(s) 173
AcuI CTGAAG 1 cut(s) 81
AfiI CCNNNNNNNGG 1 cut(s) 281
AgsI TTSAA 2 cut(s) 121, 199
AleI CACNNNNGTG 1 cut(s) 93
AoxI GGCC 2 cut(s) 227, 283
ApoI RAATTY 1 cut(s) 173
ArsI GACNNNNNNTTYG 2 cut(s) 107, 139
AspLEI GCGC 1 cut(s) 345
AspS9I GGNCC 1 cut(s) 284
AsuHPI GGTGA 4 cut(s) 46, 73, 107, 172
BalI TGGCCA 1 cut(s) 229
BbsI GAAGAC 1 cut(s) 69
BceAI ACGGC 1 cut(s) 106
BfuAI ACCTGC 1 cut(s) 191
BmgT120I GGNCC 1 cut(s) 284
BmiI GGNNCC 1 cut(s) 286
BpiI GAAGAC 1 cut(s) 69
BsaJI CCNNGG 1 cut(s) 187
BsaWI WCCGGW 1 cut(s) 244
BsaXI ACNNNNNCTCC 2 cut(s) 234, 264
Bsc4I CCNNNNNNNGG 1 cut(s) 281
Bse1I ACTGG 1 cut(s) 237
BseDI CCNNGG 1 cut(s) 187
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 281
BseNI ACTGG 1 cut(s) 237
Bsh1236I CGCG 1 cut(s) 345
Bsh1285I CGRYCG 1 cut(s) 266
BshFI GGCC 2 cut(s) 229, 285
BsiEI CGRYCG 1 cut(s) 266
BsiSI CCGG 1 cut(s) 245
BslI CCNNNNNNNGG 1 cut(s) 281
BsnI GGCC 2 cut(s) 229, 285
Bsp143I GATC 1 cut(s) 263
Bsp19I CCATGG 1 cut(s) 187
BspACI CCGC 3 cut(s) 93, 168, 352
BspANI GGCC 2 cut(s) 229, 285
BspFNI CGCG 1 cut(s) 345
BspLI GGNNCC 1 cut(s) 286
BspMI ACCTGC 1 cut(s) 191
BsrBI CCGCTC 1 cut(s) 352
BsrI ACTGG 1 cut(s) 237
BssECI CCNNGG 1 cut(s) 187
BssMI GATC 1 cut(s) 263
BssT1I CCWWGG 1 cut(s) 187
BstDEI CTNAG 2 cut(s) 76, 304
BstDSI CCRYGG 1 cut(s) 187
BstF5I GGATG 1 cut(s) 10
BstFNI CGCG 1 cut(s) 345
BstHHI GCGC 1 cut(s) 345
BstKTI GATC 1 cut(s) 266
BstMBI GATC 1 cut(s) 263
BstMCI CGRYCG 1 cut(s) 266
BstMWI GCNNNNNNNGC 1 cut(s) 349
BstUI CGCG 1 cut(s) 345
BstV2I GAAGAC 1 cut(s) 69
BsuRI GGCC 2 cut(s) 229, 285
BtgI CCRYGG 1 cut(s) 187
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 230
BveI ACCTGC 1 cut(s) 191
CfoI GCGC 1 cut(s) 345
Cfr13I GGNCC 1 cut(s) 284
CviAII CATG 1 cut(s) 188
CviJI RGCY 4 cut(s) 149, 229, 274, 285
CviKI_1 RGCY 4 cut(s) 149, 229, 274, 285
DdeI CTNAG 2 cut(s) 76, 304
DpnI GATC 1 cut(s) 265
DpnII GATC 1 cut(s) 263
DraI TTTAAA 1 cut(s) 216
DrdI GACNNNNNNGTC 1 cut(s) 71
DseDI GACNNNNNNGTC 1 cut(s) 71
EaeI YGGCCR 1 cut(s) 227
Eco130I CCWWGG 1 cut(s) 187
Eco57I CTGAAG 1 cut(s) 81
EcoO109I RGGNCCY 1 cut(s) 284
EcoT14I CCWWGG 1 cut(s) 187
ErhI CCWWGG 1 cut(s) 187
FaeI CATG 1 cut(s) 191
FaiI YATR 3 cut(s) 140, 189, 341
FatI CATG 1 cut(s) 187
FokI GGATG 1 cut(s) 17
GlaI GCGC 1 cut(s) 344
HaeIII GGCC 2 cut(s) 229, 285
HapII CCGG 1 cut(s) 245
HhaI GCGC 1 cut(s) 345
Hin1II CATG 1 cut(s) 191
Hin6I GCGC 1 cut(s) 343
HinP1I GCGC 1 cut(s) 343
HinfI GANTC 2 cut(s) 208, 290
HpaII CCGG 1 cut(s) 245
HphI GGTGA 4 cut(s) 46, 73, 107, 172
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 1 cut(s) 43
Hpy8I GTNNAC 1 cut(s) 37
HpyCH4V TGCA 1 cut(s) 314
HpyF10VI GCNNNNNNNGC 1 cut(s) 349
HpyF3I CTNAG 2 cut(s) 76, 304
Hsp92II CATG 1 cut(s) 191
HspAI GCGC 1 cut(s) 343
Kzo9I GATC 1 cut(s) 263
LmnI GCTCC 1 cut(s) 349
LpnPI CCDG 4 cut(s) 39, 196, 218, 258
MaeIII GTNAC 1 cut(s) 79
MalI GATC 1 cut(s) 265
MbiI CCGCTC 1 cut(s) 352
MboI GATC 1 cut(s) 263
MboII GAAGA 3 cut(s) 58, 74, 169
MlsI TGGCCA 1 cut(s) 229
MluCI AATT 3 cut(s) 173, 199, 320
MluNI TGGCCA 1 cut(s) 229
MlyI GAGTC 1 cut(s) 284
MnlI CCTC 3 cut(s) 115, 139, 340
Mox20I TGGCCA 1 cut(s) 229
MscI TGGCCA 1 cut(s) 229
MseI TTAA 2 cut(s) 215, 323
MslI CAYNNNNRTG 1 cut(s) 93
Msp20I TGGCCA 1 cut(s) 229
MspI CCGG 1 cut(s) 245
MvnI CGCG 1 cut(s) 345
MwoI GCNNNNNNNGC 1 cut(s) 349
NcoI CCATGG 1 cut(s) 187
NdeII GATC 1 cut(s) 263
NlaIII CATG 1 cut(s) 191
NlaIV GGNNCC 1 cut(s) 286
NmuCI GTSAC 1 cut(s) 79
OliI CACNNNNGTG 1 cut(s) 93
PaqCI CACCTGC 1 cut(s) 191
PfeI GAWTC 1 cut(s) 208
Ple19I CGATCG 1 cut(s) 266
PleI GAGTC 1 cut(s) 284
PpsI GAGTC 1 cut(s) 284
PspN4I GGNNCC 1 cut(s) 286
PspPI GGNCC 1 cut(s) 284
PsrI GAACNNNNNNTAC 2 cut(s) 300, 332
PvuI CGATCG 1 cut(s) 266
RseI CAYNNNNRTG 1 cut(s) 93
SaqAI TTAA 2 cut(s) 215, 323
Sau3AI GATC 1 cut(s) 263
Sau96I GGNCC 1 cut(s) 284
SchI GAGTC 1 cut(s) 284
SetI ASST 3 cut(s) 86, 107, 185
SmiMI CAYNNNNRTG 1 cut(s) 93
Sse9I AATT 3 cut(s) 173, 199, 320
SsiI CCGC 3 cut(s) 93, 168, 352
StyI CCWWGG 1 cut(s) 187
TaqI TCGA 1 cut(s) 266
TaqII GACCGA 1 cut(s) 276
TasI AATT 3 cut(s) 173, 199, 320
TfiI GAWTC 1 cut(s) 208
Tru1I TTAA 2 cut(s) 215, 323
Tru9I TTAA 2 cut(s) 215, 323
TscAI CASTG 1 cut(s) 237
TseFI GTSAC 1 cut(s) 79
Tsp45I GTSAC 1 cut(s) 79
TspGWI ACGGA 1 cut(s) 314
TspRI CASTG 1 cut(s) 237
XapI RAATTY 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.