Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 461, 800 |
| AccB1I | GGYRCC | 1 cut(s) | 1014 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1033 |
| AccII | CGCG | 2 cut(s) | 352, 538 |
| AciI | CCGC | 9 cut(s) | 350, 468, 536, 538, 541, 650, 653, 716, 780 |
| AclWI | GGATC | 2 cut(s) | 221, 370 |
| AcoI | YGGCCR | 2 cut(s) | 347, 1088 |
| AcsI | RAATTY | 1 cut(s) | 783 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 437, 1033 |
| AflIII | ACRYGT | 1 cut(s) | 144 |
| AgsI | TTSAA | 8 cut(s) | 73, 427, 507, 584, 761, 845, 950, 958 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 91 |
| AluBI | AGCT | 3 cut(s) | 191, 313, 443 |
| AluI | AGCT | 3 cut(s) | 191, 313, 443 |
| Alw21I | GWGCWC | 1 cut(s) | 445 |
| Alw26I | GTCTC | 1 cut(s) | 1068 |
| AlwI | GGATC | 2 cut(s) | 221, 370 |
| Ama87I | CYCGRG | 1 cut(s) | 1010 |
| AoxI | GGCC | 3 cut(s) | 347, 642, 1088 |
| ApeKI | GCWGC | 6 cut(s) | 291, 494, 497, 529, 532, 777 |
| ApoI | RAATTY | 1 cut(s) | 783 |
| AspLEI | GCGC | 1 cut(s) | 802 |
| AspS9I | GGNCC | 2 cut(s) | 630, 983 |
| AsuC2I | CCSGG | 2 cut(s) | 615, 1092 |
| AsuHPI | GGTGA | 2 cut(s) | 629, 812 |
| AvaI | CYCGRG | 1 cut(s) | 1010 |
| AvaII | GGWCC | 2 cut(s) | 630, 983 |
| BaeGI | GKGCMC | 1 cut(s) | 613 |
| BanI | GGYRCC | 1 cut(s) | 1014 |
| BanII | GRGCYC | 1 cut(s) | 445 |
| BbsI | GAAGAC | 3 cut(s) | 206, 381, 852 |
| Bbv12I | GWGCWC | 1 cut(s) | 445 |
| BbvI | GCAGC | 6 cut(s) | 278, 506, 509, 541, 544, 764 |
| BccI | CCATC | 5 cut(s) | 281, 466, 695, 867, 1034 |
| BceAI | ACGGC | 1 cut(s) | 162 |
| BclI | TGATCA | 1 cut(s) | 381 |
| BcnI | CCSGG | 2 cut(s) | 615, 1092 |
| BcoDI | GTCTC | 1 cut(s) | 1068 |
| BfaI | CTAG | 2 cut(s) | 674, 875 |
| BfmI | CTRYAG | 1 cut(s) | 1019 |
| BfuAI | ACCTGC | 2 cut(s) | 461, 800 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 541, 650 |
| Bme1390I | CCNGG | 2 cut(s) | 615, 1092 |
| Bme18I | GGWCC | 2 cut(s) | 630, 983 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 91 |
| BmeT110I | CYCGRG | 1 cut(s) | 1010 |
| BmgT120I | GGNCC | 2 cut(s) | 630, 983 |
| BmiI | GGNNCC | 1 cut(s) | 1016 |
| BmrFI | CCNGG | 2 cut(s) | 615, 1092 |
| BmsI | GCATC | 1 cut(s) | 931 |
| BpiI | GAAGAC | 3 cut(s) | 206, 381, 852 |
| BpuMI | CCSGG | 2 cut(s) | 615, 1092 |
| BsaI | GGTCTC | 1 cut(s) | 1068 |
| BsaJI | CCNNGG | 5 cut(s) | 245, 536, 613, 645, 1009 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 437, 1033 |
| Bse1I | ACTGG | 2 cut(s) | 350, 985 |
| BseDI | CCNNGG | 5 cut(s) | 245, 536, 613, 645, 1009 |
| BseGI | GGATG | 1 cut(s) | 667 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 437, 1033 |
| BseMII | CTCAG | 1 cut(s) | 1001 |
| BseNI | ACTGG | 2 cut(s) | 350, 985 |
| BseSI | GKGCMC | 1 cut(s) | 613 |
| BseXI | GCAGC | 6 cut(s) | 278, 506, 509, 541, 544, 764 |
| BsgI | GTGCAG | 1 cut(s) | 778 |
| Bsh1236I | CGCG | 2 cut(s) | 352, 538 |
| BshFI | GGCC | 3 cut(s) | 349, 644, 1090 |
| BshNI | GGYRCC | 1 cut(s) | 1014 |
| BsiHKAI | GWGCWC | 1 cut(s) | 445 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1010 |
| BsiSI | CCGG | 3 cut(s) | 218, 615, 1091 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 437, 1033 |
| BsmAI | GTCTC | 1 cut(s) | 1068 |
| BsnI | GGCC | 3 cut(s) | 349, 644, 1090 |
| Bso31I | GGTCTC | 1 cut(s) | 1068 |
| BsoBI | CYCGRG | 1 cut(s) | 1010 |
| Bsp1286I | GDGCHC | 2 cut(s) | 445, 613 |
| Bsp143I | GATC | 5 cut(s) | 66, 226, 304, 362, 381 |
| Bsp19I | CCATGG | 1 cut(s) | 245 |
| BspACI | CCGC | 9 cut(s) | 350, 468, 536, 538, 541, 650, 653, 716, 780 |
| BspANI | GGCC | 3 cut(s) | 349, 644, 1090 |
| BspCNI | CTCAG | 1 cut(s) | 1000 |
| BspFNI | CGCG | 2 cut(s) | 352, 538 |
| BspLI | GGNNCC | 1 cut(s) | 1016 |
| BspMAI | CTGCAG | 1 cut(s) | 1023 |
| BspMI | ACCTGC | 2 cut(s) | 461, 800 |
| BspPI | GGATC | 2 cut(s) | 221, 370 |
| BspT107I | GGYRCC | 1 cut(s) | 1014 |
| BspTNI | GGTCTC | 1 cut(s) | 1068 |
| BsrI | ACTGG | 2 cut(s) | 350, 985 |
| BssECI | CCNNGG | 5 cut(s) | 245, 536, 613, 645, 1009 |
| BssMI | GATC | 5 cut(s) | 66, 226, 304, 362, 381 |
| BssT1I | CCWWGG | 1 cut(s) | 245 |
| Bst4CI | ACNGT | 1 cut(s) | 1098 |
| Bst6I | CTCTTC | 1 cut(s) | 508 |
| BstC8I | GCNNGC | 3 cut(s) | 56, 189, 1019 |
| BstDEI | CTNAG | 3 cut(s) | 96, 158, 987 |
| BstDSI | CCRYGG | 2 cut(s) | 245, 536 |
| BstF5I | GGATG | 1 cut(s) | 667 |
| BstFNI | CGCG | 2 cut(s) | 352, 538 |
| BstHHI | GCGC | 1 cut(s) | 802 |
| BstKTI | GATC | 5 cut(s) | 69, 229, 307, 365, 384 |
| BstMAI | GTCTC | 1 cut(s) | 1068 |
| BstMBI | GATC | 5 cut(s) | 66, 226, 304, 362, 381 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 535, 538, 541, 608, 650 |
| BstNSI | RCATGY | 1 cut(s) | 148 |
| BstSCI | CCNGG | 2 cut(s) | 613, 1090 |
| BstSFI | CTRYAG | 1 cut(s) | 1019 |
| BstSLI | GKGCMC | 1 cut(s) | 613 |
| BstUI | CGCG | 2 cut(s) | 352, 538 |
| BstV1I | GCAGC | 6 cut(s) | 278, 506, 509, 541, 544, 764 |
| BstV2I | GAAGAC | 3 cut(s) | 206, 381, 852 |
| BsuRI | GGCC | 3 cut(s) | 349, 644, 1090 |
| BtgI | CCRYGG | 2 cut(s) | 245, 536 |
| BtsCI | GGATG | 1 cut(s) | 667 |
| BtsIMutI | CAGTG | 1 cut(s) | 995 |
| BveI | ACCTGC | 2 cut(s) | 461, 800 |
| Cac8I | GCNNGC | 3 cut(s) | 56, 189, 1019 |
| CfoI | GCGC | 1 cut(s) | 802 |
| Cfr13I | GGNCC | 2 cut(s) | 630, 983 |
| Cfr42I | CCGCGG | 1 cut(s) | 539 |
| CseI | GACGC | 1 cut(s) | 826 |
| CviAII | CATG | 6 cut(s) | 80, 118, 145, 246, 385, 627 |
| DdeI | CTNAG | 3 cut(s) | 96, 158, 987 |
| DpnI | GATC | 5 cut(s) | 68, 228, 306, 364, 383 |
| DpnII | GATC | 5 cut(s) | 66, 226, 304, 362, 381 |
| DriI | GACNNNNNGTC | 1 cut(s) | 91 |
| EaeI | YGGCCR | 2 cut(s) | 347, 1088 |
| Eam1104I | CTCTTC | 1 cut(s) | 508 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 91 |
| EarI | CTCTTC | 1 cut(s) | 508 |
| EciI | GGCGGA | 1 cut(s) | 668 |
| Ecl136II | GAGCTC | 1 cut(s) | 443 |
| Eco130I | CCWWGG | 1 cut(s) | 245 |
| Eco24I | GRGCYC | 1 cut(s) | 445 |
| Eco31I | GGTCTC | 1 cut(s) | 1068 |
| Eco47I | GGWCC | 2 cut(s) | 630, 983 |
| Eco53kI | GAGCTC | 1 cut(s) | 443 |
| Eco88I | CYCGRG | 1 cut(s) | 1010 |
| EcoICRI | GAGCTC | 1 cut(s) | 443 |
| EcoRI | GAATTC | 1 cut(s) | 783 |
| EcoT14I | CCWWGG | 1 cut(s) | 245 |
| EcoT38I | GRGCYC | 1 cut(s) | 445 |
| ErhI | CCWWGG | 1 cut(s) | 245 |
| FaeI | CATG | 6 cut(s) | 83, 121, 148, 249, 388, 630 |
| FatI | CATG | 6 cut(s) | 79, 117, 144, 245, 384, 626 |
| FbaI | TGATCA | 1 cut(s) | 381 |
| FokI | GGATG | 1 cut(s) | 674 |
| FriOI | GRGCYC | 1 cut(s) | 445 |
| FspBI | CTAG | 2 cut(s) | 674, 875 |
| GlaI | GCGC | 1 cut(s) | 801 |
| HaeIII | GGCC | 3 cut(s) | 349, 644, 1090 |
| HapII | CCGG | 3 cut(s) | 218, 615, 1091 |
| HgaI | GACGC | 1 cut(s) | 826 |
| HhaI | GCGC | 1 cut(s) | 802 |
| Hin1II | CATG | 6 cut(s) | 83, 121, 148, 249, 388, 630 |
| Hin6I | GCGC | 1 cut(s) | 800 |
| HinP1I | GCGC | 1 cut(s) | 800 |
| HincII | GTYRAC | 2 cut(s) | 1006, 1060 |
| HindII | GTYRAC | 2 cut(s) | 1006, 1060 |
| HindIII | AAGCTT | 1 cut(s) | 311 |
| HinfI | GANTC | 4 cut(s) | 127, 260, 401, 890 |
| HpaI | GTTAAC | 1 cut(s) | 1060 |
| HpaII | CCGG | 3 cut(s) | 218, 615, 1091 |
| HphI | GGTGA | 2 cut(s) | 629, 812 |
| Hpy166II | GTNNAC | 4 cut(s) | 856, 1006, 1036, 1060 |
| Hpy188I | TCNGA | 3 cut(s) | 151, 864, 889 |
| Hpy188III | TCNNGA | 5 cut(s) | 18, 38, 167, 424, 683 |
| Hpy8I | GTNNAC | 4 cut(s) | 856, 1006, 1036, 1060 |
| Hpy99I | CGWCG | 2 cut(s) | 213, 842 |
| HpyCH4III | ACNGT | 1 cut(s) | 1098 |
| HpyCH4IV | ACGT | 3 cut(s) | 171, 208, 579 |
| HpyCH4V | TGCA | 9 cut(s) | 79, 121, 142, 336, 529, 573, 795, 916, 1021 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 535, 538, 541, 608, 650 |
| HpyF3I | CTNAG | 3 cut(s) | 96, 158, 987 |
| HpySE526I | ACGT | 3 cut(s) | 171, 208, 579 |
| Hsp92II | CATG | 6 cut(s) | 83, 121, 148, 249, 388, 630 |
| HspAI | GCGC | 1 cut(s) | 800 |
| Ksp22I | TGATCA | 1 cut(s) | 381 |
| KspAI | GTTAAC | 1 cut(s) | 1060 |
| KspI | CCGCGG | 1 cut(s) | 539 |
| Kzo9I | GATC | 5 cut(s) | 66, 226, 304, 362, 381 |
| LmnI | GCTCC | 2 cut(s) | 440, 459 |
| Lsp1109I | GCAGC | 6 cut(s) | 278, 506, 509, 541, 544, 764 |
| LweI | GCATC | 1 cut(s) | 931 |
| MaeI | CTAG | 2 cut(s) | 674, 875 |
| MaeII | ACGT | 3 cut(s) | 171, 208, 579 |
| MaeIII | GTNAC | 5 cut(s) | 167, 811, 869, 929, 973 |
| MalI | GATC | 5 cut(s) | 68, 228, 306, 364, 383 |
| MboI | GATC | 5 cut(s) | 66, 226, 304, 362, 381 |
| MboII | GAAGA | 6 cut(s) | 61, 206, 381, 409, 495, 857 |
| MfeI | CAATTG | 2 cut(s) | 122, 366 |
| MhlI | GDGCHC | 2 cut(s) | 445, 613 |
| MluCI | AATT | 7 cut(s) | 122, 339, 366, 447, 707, 761, 783 |
| MmeI | TCCRAC | 2 cut(s) | 340, 942 |
| MseI | TTAA | 3 cut(s) | 6, 743, 1059 |
| MspA1I | CMGCKG | 1 cut(s) | 538 |
| MspI | CCGG | 3 cut(s) | 218, 615, 1091 |
| MspR9I | CCNGG | 2 cut(s) | 615, 1092 |
| MunI | CAATTG | 2 cut(s) | 122, 366 |
| MvnI | CGCG | 2 cut(s) | 352, 538 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 535, 538, 541, 608, 650 |
| NciI | CCSGG | 2 cut(s) | 615, 1092 |
| NcoI | CCATGG | 1 cut(s) | 245 |
| NdeII | GATC | 5 cut(s) | 66, 226, 304, 362, 381 |
| NlaIII | CATG | 6 cut(s) | 83, 121, 148, 249, 388, 630 |
| NlaIV | GGNNCC | 1 cut(s) | 1016 |
| NmeAIII | GCCGAG | 1 cut(s) | 670 |
| NmuCI | GTSAC | 1 cut(s) | 167 |
| NspI | RCATGY | 1 cut(s) | 148 |
| PciI | ACATGT | 1 cut(s) | 144 |
| PfeI | GAWTC | 4 cut(s) | 127, 260, 401, 890 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1033 |
| PscI | ACATGT | 1 cut(s) | 144 |
| Psp124BI | GAGCTC | 1 cut(s) | 445 |
| PspN4I | GGNNCC | 1 cut(s) | 1016 |
| PspPI | GGNCC | 2 cut(s) | 630, 983 |
| PstI | CTGCAG | 1 cut(s) | 1023 |
| SacI | GAGCTC | 1 cut(s) | 445 |
| SacII | CCGCGG | 1 cut(s) | 539 |
| SaqAI | TTAA | 3 cut(s) | 6, 743, 1059 |
| Sau3AI | GATC | 5 cut(s) | 66, 226, 304, 362, 381 |
| Sau96I | GGNCC | 2 cut(s) | 630, 983 |
| ScrFI | CCNGG | 2 cut(s) | 615, 1092 |
| SduI | GDGCHC | 2 cut(s) | 445, 613 |
| SfaNI | GCATC | 1 cut(s) | 931 |
| SfcI | CTRYAG | 1 cut(s) | 1019 |
| Sfr303I | CCGCGG | 1 cut(s) | 539 |
| SgrBI | CCGCGG | 1 cut(s) | 539 |
| SinI | GGWCC | 2 cut(s) | 630, 983 |
| Sse9I | AATT | 7 cut(s) | 122, 339, 366, 447, 707, 761, 783 |
| SsiI | CCGC | 9 cut(s) | 350, 468, 536, 538, 541, 650, 653, 716, 780 |
| SspMI | CTAG | 2 cut(s) | 674, 875 |
| SstI | GAGCTC | 1 cut(s) | 445 |
| StyD4I | CCNGG | 2 cut(s) | 613, 1090 |
| StyI | CCWWGG | 1 cut(s) | 245 |
| TaaI | ACNGT | 1 cut(s) | 1098 |
| TaiI | ACGT | 3 cut(s) | 174, 211, 582 |
| TaqI | TCGA | 2 cut(s) | 258, 307 |
| TasI | AATT | 7 cut(s) | 122, 339, 366, 447, 707, 761, 783 |
| TauI | GCSGC | 5 cut(s) | 352, 538, 541, 544, 653 |
| TfiI | GAWTC | 4 cut(s) | 127, 260, 401, 890 |
| Tru1I | TTAA | 3 cut(s) | 6, 743, 1059 |
| Tru9I | TTAA | 3 cut(s) | 6, 743, 1059 |
| TscAI | CASTG | 1 cut(s) | 995 |
| TseFI | GTSAC | 1 cut(s) | 167 |
| TseI | GCWGC | 6 cut(s) | 291, 494, 497, 529, 532, 777 |
| Tsp45I | GTSAC | 1 cut(s) | 167 |
| TspDTI | ATGAA | 3 cut(s) | 261, 414, 776 |
| TspGWI | ACGGA | 1 cut(s) | 530 |
| TspRI | CASTG | 1 cut(s) | 995 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1033 |
| VpaK11BI | GGWCC | 2 cut(s) | 630, 983 |
| XapI | RAATTY | 1 cut(s) | 783 |
| XceI | RCATGY | 1 cut(s) | 148 |
| XspI | CTAG | 2 cut(s) | 674, 875 |