Rmu_sc0003887.1_g000021

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003887.1
Physical Location & Seq
Reverse (-)
79433 .. 81323
1891 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003887.1_g000021.1.cds

Sequence Viewer

Length: 1101 bp
atgattaacagcctatcaagaaagttgctatggtgtcttgattttattccctgctggctcaaaacgatcttcaatgtgcatgatgacaggtggtctaagaaactcccagatgatgtcatgcaattgattctacaacgattgcacatgtctgattatcttagttgtcgtgacgtatgccgttcttggcgagctgtaatcgtcagcaaacgtcgtcttccggctaatgatcctactaatcaactcccatggcttttgctcgattcttgttattcatactacatcaaagatggctgcctcgtaagtgatcgaaagctttacaaatccaaaaaggattgcacaatttactggccgcgttgtgttggatcaattgagggttggctgatcatgtcttctaaatatgaatcagtttatcacttcttcctcttgaaccccgtattaggagctcaaattatgctcccatcacattccgcaggtaaagtctataaaataaaagcagcagcctcttcaataccaacggaaacaaggttgcagcagccgcggcggctgtgttatgtgtcttgccttgtttcttgcattgacgttgaaaaacaaggtcagttggctttttgtgcccccggtgataaatcatggacctccattgaggccgaggcggcggagtgggatgatatggctctaggatttctggatatagaaatagttgatgggaaattatatgcggtaggtagccacgcattagagtttttaatggtgtttgacattgaattagataccaatggctgcggaattcatacctgcacagcgcaaaggttggttactcatcaccccaactttgagagcgtcgttgaagacagagtttaccatcggatttgttacctagcaaaaggttctgaatcaaatgagttgtttatgattttgcataagcatcatcgttacacgaccagaggatttcaagtgttgaagttggagtataatgttacgactggtcctcagtgggtagagattgttgacctcgggtgcctgcagaaccataaggtggacgatggtaaagggctttttgttaacacgcaggaaagagaccttttatcttggccgggactgtga

Protein Analysis

366

Amino Acids

42.08

Weight (kDa)

6.87

Isoelectric Point (pI)

38.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000142)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 461, 800
AccB1I GGYRCC 1 cut(s) 1014
AccB7I CCANNNNNTGG 1 cut(s) 1033
AccII CGCG 2 cut(s) 352, 538
AciI CCGC 9 cut(s) 350, 468, 536, 538, 541, 650, 653, 716, 780
AclWI GGATC 2 cut(s) 221, 370
AcoI YGGCCR 2 cut(s) 347, 1088
AcsI RAATTY 1 cut(s) 783
AfiI CCNNNNNNNGG 2 cut(s) 437, 1033
AflIII ACRYGT 1 cut(s) 144
AgsI TTSAA 8 cut(s) 73, 427, 507, 584, 761, 845, 950, 958
AhdI GACNNNNNGTC 1 cut(s) 91
AluBI AGCT 3 cut(s) 191, 313, 443
AluI AGCT 3 cut(s) 191, 313, 443
Alw21I GWGCWC 1 cut(s) 445
Alw26I GTCTC 1 cut(s) 1068
AlwI GGATC 2 cut(s) 221, 370
Ama87I CYCGRG 1 cut(s) 1010
AoxI GGCC 3 cut(s) 347, 642, 1088
ApeKI GCWGC 6 cut(s) 291, 494, 497, 529, 532, 777
ApoI RAATTY 1 cut(s) 783
AspLEI GCGC 1 cut(s) 802
AspS9I GGNCC 2 cut(s) 630, 983
AsuC2I CCSGG 2 cut(s) 615, 1092
AsuHPI GGTGA 2 cut(s) 629, 812
AvaI CYCGRG 1 cut(s) 1010
AvaII GGWCC 2 cut(s) 630, 983
BaeGI GKGCMC 1 cut(s) 613
BanI GGYRCC 1 cut(s) 1014
BanII GRGCYC 1 cut(s) 445
BbsI GAAGAC 3 cut(s) 206, 381, 852
Bbv12I GWGCWC 1 cut(s) 445
BbvI GCAGC 6 cut(s) 278, 506, 509, 541, 544, 764
BccI CCATC 5 cut(s) 281, 466, 695, 867, 1034
BceAI ACGGC 1 cut(s) 162
BclI TGATCA 1 cut(s) 381
BcnI CCSGG 2 cut(s) 615, 1092
BcoDI GTCTC 1 cut(s) 1068
BfaI CTAG 2 cut(s) 674, 875
BfmI CTRYAG 1 cut(s) 1019
BfuAI ACCTGC 2 cut(s) 461, 800
BglI GCCNNNNNGGC 2 cut(s) 541, 650
Bme1390I CCNGG 2 cut(s) 615, 1092
Bme18I GGWCC 2 cut(s) 630, 983
BmeRI GACNNNNNGTC 1 cut(s) 91
BmeT110I CYCGRG 1 cut(s) 1010
BmgT120I GGNCC 2 cut(s) 630, 983
BmiI GGNNCC 1 cut(s) 1016
BmrFI CCNGG 2 cut(s) 615, 1092
BmsI GCATC 1 cut(s) 931
BpiI GAAGAC 3 cut(s) 206, 381, 852
BpuMI CCSGG 2 cut(s) 615, 1092
BsaI GGTCTC 1 cut(s) 1068
BsaJI CCNNGG 5 cut(s) 245, 536, 613, 645, 1009
Bsc4I CCNNNNNNNGG 2 cut(s) 437, 1033
Bse1I ACTGG 2 cut(s) 350, 985
BseDI CCNNGG 5 cut(s) 245, 536, 613, 645, 1009
BseGI GGATG 1 cut(s) 667
BseLI CCNNNNNNNGG 2 cut(s) 437, 1033
BseMII CTCAG 1 cut(s) 1001
BseNI ACTGG 2 cut(s) 350, 985
BseSI GKGCMC 1 cut(s) 613
BseXI GCAGC 6 cut(s) 278, 506, 509, 541, 544, 764
BsgI GTGCAG 1 cut(s) 778
Bsh1236I CGCG 2 cut(s) 352, 538
BshFI GGCC 3 cut(s) 349, 644, 1090
BshNI GGYRCC 1 cut(s) 1014
BsiHKAI GWGCWC 1 cut(s) 445
BsiHKCI CYCGRG 1 cut(s) 1010
BsiSI CCGG 3 cut(s) 218, 615, 1091
BslI CCNNNNNNNGG 2 cut(s) 437, 1033
BsmAI GTCTC 1 cut(s) 1068
BsnI GGCC 3 cut(s) 349, 644, 1090
Bso31I GGTCTC 1 cut(s) 1068
BsoBI CYCGRG 1 cut(s) 1010
Bsp1286I GDGCHC 2 cut(s) 445, 613
Bsp143I GATC 5 cut(s) 66, 226, 304, 362, 381
Bsp19I CCATGG 1 cut(s) 245
BspACI CCGC 9 cut(s) 350, 468, 536, 538, 541, 650, 653, 716, 780
BspANI GGCC 3 cut(s) 349, 644, 1090
BspCNI CTCAG 1 cut(s) 1000
BspFNI CGCG 2 cut(s) 352, 538
BspLI GGNNCC 1 cut(s) 1016
BspMAI CTGCAG 1 cut(s) 1023
BspMI ACCTGC 2 cut(s) 461, 800
BspPI GGATC 2 cut(s) 221, 370
BspT107I GGYRCC 1 cut(s) 1014
BspTNI GGTCTC 1 cut(s) 1068
BsrI ACTGG 2 cut(s) 350, 985
BssECI CCNNGG 5 cut(s) 245, 536, 613, 645, 1009
BssMI GATC 5 cut(s) 66, 226, 304, 362, 381
BssT1I CCWWGG 1 cut(s) 245
Bst4CI ACNGT 1 cut(s) 1098
Bst6I CTCTTC 1 cut(s) 508
BstC8I GCNNGC 3 cut(s) 56, 189, 1019
BstDEI CTNAG 3 cut(s) 96, 158, 987
BstDSI CCRYGG 2 cut(s) 245, 536
BstF5I GGATG 1 cut(s) 667
BstFNI CGCG 2 cut(s) 352, 538
BstHHI GCGC 1 cut(s) 802
BstKTI GATC 5 cut(s) 69, 229, 307, 365, 384
BstMAI GTCTC 1 cut(s) 1068
BstMBI GATC 5 cut(s) 66, 226, 304, 362, 381
BstMWI GCNNNNNNNGC 5 cut(s) 535, 538, 541, 608, 650
BstNSI RCATGY 1 cut(s) 148
BstSCI CCNGG 2 cut(s) 613, 1090
BstSFI CTRYAG 1 cut(s) 1019
BstSLI GKGCMC 1 cut(s) 613
BstUI CGCG 2 cut(s) 352, 538
BstV1I GCAGC 6 cut(s) 278, 506, 509, 541, 544, 764
BstV2I GAAGAC 3 cut(s) 206, 381, 852
BsuRI GGCC 3 cut(s) 349, 644, 1090
BtgI CCRYGG 2 cut(s) 245, 536
BtsCI GGATG 1 cut(s) 667
BtsIMutI CAGTG 1 cut(s) 995
BveI ACCTGC 2 cut(s) 461, 800
Cac8I GCNNGC 3 cut(s) 56, 189, 1019
CfoI GCGC 1 cut(s) 802
Cfr13I GGNCC 2 cut(s) 630, 983
Cfr42I CCGCGG 1 cut(s) 539
CseI GACGC 1 cut(s) 826
CviAII CATG 6 cut(s) 80, 118, 145, 246, 385, 627
DdeI CTNAG 3 cut(s) 96, 158, 987
DpnI GATC 5 cut(s) 68, 228, 306, 364, 383
DpnII GATC 5 cut(s) 66, 226, 304, 362, 381
DriI GACNNNNNGTC 1 cut(s) 91
EaeI YGGCCR 2 cut(s) 347, 1088
Eam1104I CTCTTC 1 cut(s) 508
Eam1105I GACNNNNNGTC 1 cut(s) 91
EarI CTCTTC 1 cut(s) 508
EciI GGCGGA 1 cut(s) 668
Ecl136II GAGCTC 1 cut(s) 443
Eco130I CCWWGG 1 cut(s) 245
Eco24I GRGCYC 1 cut(s) 445
Eco31I GGTCTC 1 cut(s) 1068
Eco47I GGWCC 2 cut(s) 630, 983
Eco53kI GAGCTC 1 cut(s) 443
Eco88I CYCGRG 1 cut(s) 1010
EcoICRI GAGCTC 1 cut(s) 443
EcoRI GAATTC 1 cut(s) 783
EcoT14I CCWWGG 1 cut(s) 245
EcoT38I GRGCYC 1 cut(s) 445
ErhI CCWWGG 1 cut(s) 245
FaeI CATG 6 cut(s) 83, 121, 148, 249, 388, 630
FatI CATG 6 cut(s) 79, 117, 144, 245, 384, 626
FbaI TGATCA 1 cut(s) 381
FokI GGATG 1 cut(s) 674
FriOI GRGCYC 1 cut(s) 445
FspBI CTAG 2 cut(s) 674, 875
GlaI GCGC 1 cut(s) 801
HaeIII GGCC 3 cut(s) 349, 644, 1090
HapII CCGG 3 cut(s) 218, 615, 1091
HgaI GACGC 1 cut(s) 826
HhaI GCGC 1 cut(s) 802
Hin1II CATG 6 cut(s) 83, 121, 148, 249, 388, 630
Hin6I GCGC 1 cut(s) 800
HinP1I GCGC 1 cut(s) 800
HincII GTYRAC 2 cut(s) 1006, 1060
HindII GTYRAC 2 cut(s) 1006, 1060
HindIII AAGCTT 1 cut(s) 311
HinfI GANTC 4 cut(s) 127, 260, 401, 890
HpaI GTTAAC 1 cut(s) 1060
HpaII CCGG 3 cut(s) 218, 615, 1091
HphI GGTGA 2 cut(s) 629, 812
Hpy166II GTNNAC 4 cut(s) 856, 1006, 1036, 1060
Hpy188I TCNGA 3 cut(s) 151, 864, 889
Hpy188III TCNNGA 5 cut(s) 18, 38, 167, 424, 683
Hpy8I GTNNAC 4 cut(s) 856, 1006, 1036, 1060
Hpy99I CGWCG 2 cut(s) 213, 842
HpyCH4III ACNGT 1 cut(s) 1098
HpyCH4IV ACGT 3 cut(s) 171, 208, 579
HpyCH4V TGCA 9 cut(s) 79, 121, 142, 336, 529, 573, 795, 916, 1021
HpyF10VI GCNNNNNNNGC 5 cut(s) 535, 538, 541, 608, 650
HpyF3I CTNAG 3 cut(s) 96, 158, 987
HpySE526I ACGT 3 cut(s) 171, 208, 579
Hsp92II CATG 6 cut(s) 83, 121, 148, 249, 388, 630
HspAI GCGC 1 cut(s) 800
Ksp22I TGATCA 1 cut(s) 381
KspAI GTTAAC 1 cut(s) 1060
KspI CCGCGG 1 cut(s) 539
Kzo9I GATC 5 cut(s) 66, 226, 304, 362, 381
LmnI GCTCC 2 cut(s) 440, 459
Lsp1109I GCAGC 6 cut(s) 278, 506, 509, 541, 544, 764
LweI GCATC 1 cut(s) 931
MaeI CTAG 2 cut(s) 674, 875
MaeII ACGT 3 cut(s) 171, 208, 579
MaeIII GTNAC 5 cut(s) 167, 811, 869, 929, 973
MalI GATC 5 cut(s) 68, 228, 306, 364, 383
MboI GATC 5 cut(s) 66, 226, 304, 362, 381
MboII GAAGA 6 cut(s) 61, 206, 381, 409, 495, 857
MfeI CAATTG 2 cut(s) 122, 366
MhlI GDGCHC 2 cut(s) 445, 613
MluCI AATT 7 cut(s) 122, 339, 366, 447, 707, 761, 783
MmeI TCCRAC 2 cut(s) 340, 942
MseI TTAA 3 cut(s) 6, 743, 1059
MspA1I CMGCKG 1 cut(s) 538
MspI CCGG 3 cut(s) 218, 615, 1091
MspR9I CCNGG 2 cut(s) 615, 1092
MunI CAATTG 2 cut(s) 122, 366
MvnI CGCG 2 cut(s) 352, 538
MwoI GCNNNNNNNGC 5 cut(s) 535, 538, 541, 608, 650
NciI CCSGG 2 cut(s) 615, 1092
NcoI CCATGG 1 cut(s) 245
NdeII GATC 5 cut(s) 66, 226, 304, 362, 381
NlaIII CATG 6 cut(s) 83, 121, 148, 249, 388, 630
NlaIV GGNNCC 1 cut(s) 1016
NmeAIII GCCGAG 1 cut(s) 670
NmuCI GTSAC 1 cut(s) 167
NspI RCATGY 1 cut(s) 148
PciI ACATGT 1 cut(s) 144
PfeI GAWTC 4 cut(s) 127, 260, 401, 890
PflMI CCANNNNNTGG 1 cut(s) 1033
PscI ACATGT 1 cut(s) 144
Psp124BI GAGCTC 1 cut(s) 445
PspN4I GGNNCC 1 cut(s) 1016
PspPI GGNCC 2 cut(s) 630, 983
PstI CTGCAG 1 cut(s) 1023
SacI GAGCTC 1 cut(s) 445
SacII CCGCGG 1 cut(s) 539
SaqAI TTAA 3 cut(s) 6, 743, 1059
Sau3AI GATC 5 cut(s) 66, 226, 304, 362, 381
Sau96I GGNCC 2 cut(s) 630, 983
ScrFI CCNGG 2 cut(s) 615, 1092
SduI GDGCHC 2 cut(s) 445, 613
SfaNI GCATC 1 cut(s) 931
SfcI CTRYAG 1 cut(s) 1019
Sfr303I CCGCGG 1 cut(s) 539
SgrBI CCGCGG 1 cut(s) 539
SinI GGWCC 2 cut(s) 630, 983
Sse9I AATT 7 cut(s) 122, 339, 366, 447, 707, 761, 783
SsiI CCGC 9 cut(s) 350, 468, 536, 538, 541, 650, 653, 716, 780
SspMI CTAG 2 cut(s) 674, 875
SstI GAGCTC 1 cut(s) 445
StyD4I CCNGG 2 cut(s) 613, 1090
StyI CCWWGG 1 cut(s) 245
TaaI ACNGT 1 cut(s) 1098
TaiI ACGT 3 cut(s) 174, 211, 582
TaqI TCGA 2 cut(s) 258, 307
TasI AATT 7 cut(s) 122, 339, 366, 447, 707, 761, 783
TauI GCSGC 5 cut(s) 352, 538, 541, 544, 653
TfiI GAWTC 4 cut(s) 127, 260, 401, 890
Tru1I TTAA 3 cut(s) 6, 743, 1059
Tru9I TTAA 3 cut(s) 6, 743, 1059
TscAI CASTG 1 cut(s) 995
TseFI GTSAC 1 cut(s) 167
TseI GCWGC 6 cut(s) 291, 494, 497, 529, 532, 777
Tsp45I GTSAC 1 cut(s) 167
TspDTI ATGAA 3 cut(s) 261, 414, 776
TspGWI ACGGA 1 cut(s) 530
TspRI CASTG 1 cut(s) 995
Van91I CCANNNNNTGG 1 cut(s) 1033
VpaK11BI GGWCC 2 cut(s) 630, 983
XapI RAATTY 1 cut(s) 783
XceI RCATGY 1 cut(s) 148
XspI CTAG 2 cut(s) 674, 875
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.