Rroxscaffold_3G00258190

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000142
Physical Location & Seq
Reverse (-)
52500081 .. 52501473
1393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00258190.1

Sequence Viewer

Length: 840 bp
ATGCACGAGTATGTTAAGAAAAGCCGCTACTTCTTGAACCCGATTACAGGTGCTCGAGTCATACTTCCTTCATCAAAATGCATTGAGAAAGAGAAAGTTGTAGCCTCTTCGGTACCAACAAGGAGGGAGCACTGTTATGTGGTGAGCCTTAATTTACTTTCTGGCCGTTTGGCTTTTTGTAGGCCGACCGACCAATCATGGACTCCCATCGAAGCTTTCGAACCCGAAACTGAGAATGCTCTCGATTTTCGAGATTTAGAAATAGTTGCGGGAAAACTATATGCTGCAACTAGCAGTGCATTGGAATTTCTAATAGTGTTTGACATCAATTTGAATGGGGGCGTTCCTAGCTATACAGCTGAAAGAGTAGTTATGCATTACCCTGGTGATGGTGGGATAAAACTTGACTATAAGATGTACTTTCGGACTTGGTACCTGGTAAAGGATTTTGAATCACATGAATTGTTTCTTATTTTGCGTAACACAGCTCTAGCCCAGGTGACTGAAGGATTTCAAGTGTTGAAGTTGGAGCACTGTGATAGTAGTGGTGGTGCTCGGTGGGTGGAGATTGTTGACCTCGGTAGTCGGATATTGTTTGTGAGCATGCTTAACAACAAATGCATCTCTTCCGAGAGAGGTCTTAGTGGTTCCATTGATAAGGAGCTTGAAAGAAATTGCATCTATTTTGCTTTTGATTGGCATAGTACTGAAACATCACCTATAGTCGACTTTGGGGTGTTTTCCCTGACAAAGAGGAGCGTCAAACCATTGAGTTGTCCTATAAATCATTTGAGCCGAGAGTTGAATCAAATTGTGTGGTTTACACCAAATCCTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295

Protein Analysis

279

Amino Acids

31.78

Weight (kDa)

6.19

Isoelectric Point (pI)

45.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 7 - 247 7.1e-29 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000142)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 112, 432
AccB1I GGYRCC 2 cut(s) 112, 432
AccI GTMKAC 1 cut(s) 726
AciI CCGC 2 cut(s) 25, 269
AcoI YGGCCR 1 cut(s) 163
AcsI RAATTY 1 cut(s) 305
AcuI CTGAAG 1 cut(s) 525
AfaI GTAC 4 cut(s) 114, 419, 434, 706
AfiI CCNNNNNNNGG 3 cut(s) 47, 389, 442
AgsI TTSAA 7 cut(s) 37, 334, 452, 515, 523, 668, 805
AjnI CCWGG 3 cut(s) 382, 435, 495
AluBI AGCT 5 cut(s) 215, 351, 359, 488, 664
AluI AGCT 5 cut(s) 215, 351, 359, 488, 664
Alw21I GWGCWC 4 cut(s) 55, 132, 534, 556
Ama87I CYCGRG 1 cut(s) 54
AoxI GGCC 2 cut(s) 163, 182
ApeKI GCWGC 1 cut(s) 284
ApoI RAATTY 1 cut(s) 305
Asp700I GAANNNNTTC 2 cut(s) 465, 510
Asp718I GGTACC 2 cut(s) 112, 432
AsuHPI GGTGA 4 cut(s) 154, 398, 511, 708
AsuII TTCGAA 1 cut(s) 219
AvaI CYCGRG 1 cut(s) 54
BanI GGYRCC 2 cut(s) 112, 432
BauI CACGAG 1 cut(s) 5
Bbv12I GWGCWC 4 cut(s) 55, 132, 534, 556
BbvI GCAGC 1 cut(s) 271
BccI CCATC 2 cut(s) 215, 383
BceAI ACGGC 1 cut(s) 150
BciT130I CCWGG 3 cut(s) 384, 437, 497
BfaI CTAG 3 cut(s) 291, 348, 491
BfmI CTRYAG 1 cut(s) 720
BisI GCNGC 2 cut(s) 25, 285
BlsI GCNGC 2 cut(s) 26, 286
BmcAI AGTACT 1 cut(s) 706
Bme1390I CCNGG 3 cut(s) 384, 437, 497
BmeT110I CYCGRG 1 cut(s) 54
BmiI GGNNCC 3 cut(s) 114, 434, 649
BmrFI CCNGG 3 cut(s) 384, 437, 497
BmsI GCATC 2 cut(s) 630, 687
Bpu14I TTCGAA 1 cut(s) 219
BsaJI CCNNGG 4 cut(s) 382, 495, 577, 833
Bsc4I CCNNNNNNNGG 3 cut(s) 47, 389, 442
BseBI CCWGG 3 cut(s) 384, 437, 497
BseDI CCNNGG 4 cut(s) 382, 495, 577, 833
BseLI CCNNNNNNNGG 3 cut(s) 47, 389, 442
BseMII CTCAG 1 cut(s) 222
BseRI GAGGAG 1 cut(s) 769
BseXI GCAGC 1 cut(s) 271
Bsh1285I CGRYCG 1 cut(s) 189
BshFI GGCC 2 cut(s) 165, 184
BshNI GGYRCC 2 cut(s) 112, 432
BsiEI CGRYCG 1 cut(s) 189
BsiHKAI GWGCWC 4 cut(s) 55, 132, 534, 556
BsiHKCI CYCGRG 1 cut(s) 54
BslI CCNNNNNNNGG 3 cut(s) 47, 389, 442
BsmI GAATGC 1 cut(s) 241
BsnI GGCC 2 cut(s) 165, 184
BsoBI CYCGRG 1 cut(s) 54
Bsp119I TTCGAA 1 cut(s) 219
Bsp1286I GDGCHC 4 cut(s) 55, 132, 534, 556
BspACI CCGC 2 cut(s) 25, 269
BspANI GGCC 2 cut(s) 165, 184
BspCNI CTCAG 1 cut(s) 223
BspLI GGNNCC 3 cut(s) 114, 434, 649
BspT104I TTCGAA 1 cut(s) 219
BspT107I GGYRCC 2 cut(s) 112, 432
BssECI CCNNGG 4 cut(s) 382, 495, 577, 833
BssSI CACGAG 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 833
Bst2BI CACGAG 1 cut(s) 5
Bst2UI CCWGG 3 cut(s) 384, 437, 497
Bst4CI ACNGT 2 cut(s) 134, 536
Bst6I CTCTTC 2 cut(s) 112, 631
BstBI TTCGAA 1 cut(s) 219
BstC8I GCNNGC 1 cut(s) 605
BstDEI CTNAG 2 cut(s) 231, 641
BstENI CCTNNNNNAGG 1 cut(s) 440
BstMCI CGRYCG 1 cut(s) 189
BstMWI GCNNNNNNNGC 1 cut(s) 348
BstNI CCWGG 3 cut(s) 384, 437, 497
BstNSI RCATGY 1 cut(s) 607
BstSCI CCNGG 3 cut(s) 382, 435, 495
BstSFI CTRYAG 1 cut(s) 720
BstV1I GCAGC 1 cut(s) 271
BstXI CCANNNNNNTGG 1 cut(s) 834
BsuRI GGCC 2 cut(s) 165, 184
BtsI GCAGTG 1 cut(s) 301
BtsIMutI CAGTG 3 cut(s) 130, 301, 532
Cac8I GCNNGC 1 cut(s) 605
CseI GACGC 1 cut(s) 748
CsiI ACCWGGT 1 cut(s) 435
Csp6I GTAC 4 cut(s) 113, 418, 433, 705
CspCI CAANNNNNGTGG 2 cut(s) 797, 832
CviAII CATG 3 cut(s) 198, 458, 604
CviQI GTAC 4 cut(s) 113, 418, 433, 705
DdeI CTNAG 2 cut(s) 231, 641
EaeI YGGCCR 1 cut(s) 163
Eam1104I CTCTTC 2 cut(s) 112, 631
EarI CTCTTC 2 cut(s) 112, 631
Eco130I CCWWGG 1 cut(s) 833
Eco57I CTGAAG 1 cut(s) 525
Eco88I CYCGRG 1 cut(s) 54
EcoNI CCTNNNNNAGG 1 cut(s) 440
EcoRII CCWGG 3 cut(s) 382, 435, 495
EcoT14I CCWWGG 1 cut(s) 833
EcoT22I ATGCAT 3 cut(s) 83, 378, 623
ErhI CCWWGG 1 cut(s) 833
FaeI CATG 3 cut(s) 201, 461, 607
FalI AAGNNNNNCTT 2 cut(s) 404, 436
FatI CATG 3 cut(s) 197, 457, 603
FauI CCCGC 1 cut(s) 262
FblI GTMKAC 1 cut(s) 726
Fnu4HI GCNGC 2 cut(s) 25, 285
Fsp4HI GCNGC 2 cut(s) 25, 285
FspBI CTAG 3 cut(s) 291, 348, 491
GluI GCNGC 2 cut(s) 25, 285
HaeIII GGCC 2 cut(s) 165, 184
HgaI GACGC 1 cut(s) 748
Hin1II CATG 3 cut(s) 201, 461, 607
HincII GTYRAC 2 cut(s) 574, 727
HindII GTYRAC 2 cut(s) 574, 727
HindIII AAGCTT 1 cut(s) 213
HinfI GANTC 4 cut(s) 57, 202, 452, 805
HphI GGTGA 4 cut(s) 154, 398, 511, 708
Hpy166II GTNNAC 3 cut(s) 574, 727, 822
Hpy188I TCNGA 3 cut(s) 426, 588, 631
Hpy188III TCNNGA 3 cut(s) 34, 242, 251
Hpy8I GTNNAC 3 cut(s) 574, 727, 822
HpyAV CCTTC 2 cut(s) 78, 500
HpyCH4III ACNGT 2 cut(s) 134, 536
HpyCH4V TGCA 7 cut(s) 4, 81, 287, 299, 376, 621, 678
HpyF10VI GCNNNNNNNGC 1 cut(s) 348
HpyF3I CTNAG 2 cut(s) 231, 641
Hsp92II CATG 3 cut(s) 201, 461, 607
KpnI GGTACC 2 cut(s) 116, 436
LmnI GCTCC 4 cut(s) 127, 529, 661, 756
LpnPI CCDG 9 cut(s) 33, 147, 369, 396, 422, 449, 482, 509, 758
Lsp1109I GCAGC 1 cut(s) 271
LweI GCATC 2 cut(s) 630, 687
MabI ACCWGGT 1 cut(s) 435
MaeI CTAG 3 cut(s) 291, 348, 491
MaeIII GTNAC 2 cut(s) 479, 499
MboII GAAGA 2 cut(s) 99, 618
MhlI GDGCHC 4 cut(s) 55, 132, 534, 556
MluCI AATT 6 cut(s) 151, 305, 328, 461, 673, 810
MlyI GAGTC 2 cut(s) 66, 196
MmeI TCCRAC 2 cut(s) 507, 566
MnlI CCTC 5 cut(s) 115, 117, 587, 629, 747
Mph1103I ATGCAT 3 cut(s) 83, 378, 623
MroXI GAANNNNTTC 2 cut(s) 465, 510
MseI TTAA 3 cut(s) 15, 150, 609
MslI CAYNNNNRTG 3 cut(s) 9, 76, 135
MspA1I CMGCKG 1 cut(s) 359
MspR9I CCNGG 3 cut(s) 384, 437, 497
Mva1269I GAATGC 1 cut(s) 241
MvaI CCWGG 3 cut(s) 384, 437, 497
MwoI GCNNNNNNNGC 1 cut(s) 348
NlaIII CATG 3 cut(s) 201, 461, 607
NlaIV GGNNCC 3 cut(s) 114, 434, 649
NmeAIII GCCGAG 1 cut(s) 821
NmuCI GTSAC 1 cut(s) 499
NsiI ATGCAT 3 cut(s) 83, 378, 623
NspI RCATGY 1 cut(s) 607
NspV TTCGAA 1 cut(s) 219
PaeI GCATGC 1 cut(s) 607
PaeR7I CTCGAG 1 cut(s) 54
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PctI GAATGC 1 cut(s) 241
PdmI GAANNNNTTC 2 cut(s) 465, 510
PfeI GAWTC 2 cut(s) 452, 805
PkrI GCNGC 2 cut(s) 26, 286
PleI GAGTC 2 cut(s) 65, 196
PpsI GAGTC 2 cut(s) 65, 196
Psp6I CCWGG 3 cut(s) 382, 435, 495
PspGI CCWGG 3 cut(s) 382, 435, 495
PspN4I GGNNCC 3 cut(s) 114, 434, 649
PspXI VCTCGAGB 1 cut(s) 54
PvuII CAGCTG 1 cut(s) 359
RsaI GTAC 4 cut(s) 114, 419, 434, 706
RsaNI GTAC 4 cut(s) 113, 418, 433, 705
RseI CAYNNNNRTG 3 cut(s) 9, 76, 135
SalI GTCGAC 1 cut(s) 725
SaqAI TTAA 3 cut(s) 15, 150, 609
SatI GCNGC 2 cut(s) 25, 285
ScaI AGTACT 1 cut(s) 706
SchI GAGTC 2 cut(s) 66, 196
ScrFI CCNGG 3 cut(s) 384, 437, 497
SduI GDGCHC 4 cut(s) 55, 132, 534, 556
SexAI ACCWGGT 1 cut(s) 435
SfaNI GCATC 2 cut(s) 630, 687
SfcI CTRYAG 1 cut(s) 720
Sfr274I CTCGAG 1 cut(s) 54
SfuI TTCGAA 1 cut(s) 219
SlaI CTCGAG 1 cut(s) 54
SmiMI CAYNNNNRTG 3 cut(s) 9, 76, 135
SmlI CTYRAG 1 cut(s) 54
SmoI CTYRAG 1 cut(s) 54
SphI GCATGC 1 cut(s) 607
Sse9I AATT 6 cut(s) 151, 305, 328, 461, 673, 810
SsiI CCGC 2 cut(s) 25, 269
SspMI CTAG 3 cut(s) 291, 348, 491
StyD4I CCNGG 3 cut(s) 382, 435, 495
StyI CCWWGG 1 cut(s) 833
TaaI ACNGT 2 cut(s) 134, 536
TaqI TCGA 6 cut(s) 55, 210, 219, 243, 250, 726
TaqII GACCGA 1 cut(s) 203
TasI AATT 6 cut(s) 151, 305, 328, 461, 673, 810
TatI WGTACW 2 cut(s) 417, 704
TauI GCSGC 1 cut(s) 27
TfiI GAWTC 2 cut(s) 452, 805
Tru1I TTAA 3 cut(s) 15, 150, 609
Tru9I TTAA 3 cut(s) 15, 150, 609
TscAI CASTG 3 cut(s) 137, 301, 539
TseFI GTSAC 1 cut(s) 499
TseI GCWGC 1 cut(s) 284
Tsp45I GTSAC 1 cut(s) 499
TspDTI ATGAA 2 cut(s) 60, 474
TspRI CASTG 3 cut(s) 137, 301, 539
XagI CCTNNNNNAGG 1 cut(s) 440
XapI RAATTY 1 cut(s) 305
XceI RCATGY 1 cut(s) 607
XhoI CTCGAG 1 cut(s) 54
XmiI GTMKAC 1 cut(s) 726
XmnI GAANNNNTTC 2 cut(s) 465, 510
XspI CTAG 3 cut(s) 291, 348, 491
ZrmI AGTACT 1 cut(s) 706
Zsp2I ATGCAT 3 cut(s) 83, 378, 623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.