Rh3AG213300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000142
Physical Location & Seq
Forward (+)
21522202 .. 21525781
3580 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG213300.1

Sequence Viewer

Length: 669 bp
ATGTATGTTTTCACTCAAATCAAAGACGTTGTCCATATTGATGGTGAAAAAAATGGGGAAGTTTTGGCCTTGTCCCCATATACCAAACGCGGTGATCGTATTAAGCTTCCCCAGATGACCGGAATCATCCCATGGAGCTCCGCGGCCTCTTCGGATCCAAGATGTTCTGATTGCATTGTTGCAACCTGTTTAGATCCAAAATATGATTCTGATCGCAATATTGCAATGGAAGGCGGGATGAAGTTGGTGTTTTGCAGGCCAGATCCATTAAATCAATGTCAAGGCAAAGGCAGGTGTGAGAAGATTATTGCTTATAGGGAAAAGACAATATTAGCTGGAATGCCATCAGGGGATTCGCCGTCCGGCATTGGGAGACCATCATTTTTCTGGTCCTCCAAAGGTGAGTTTATACTGGTTTGGGGGCGCGATTGGCCCGGCAGGAAATTTCGTGCGTTAAAGATGGATGATAAAAGTGGTTGTAATCCTGTTTGGGTGGACTTGGAGACGAATGATGTTGCTGAAGACGAAGTAGTCTTAGTATCCGCCTCACACAGCACCTCAATGTCAAAGTTGAAGACATTTATGACAACCATAGACGAGGCTTTTCTTGGACTTTACAAATTCTTCACCTGCCATGAGTATGAGTTCCAGAAGACGTCCAATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

222

Amino Acids

24.83

Weight (kDa)

6.32

Isoelectric Point (pI)

28.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000142)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 282, 638
AasI GACNNNNNNGTC 1 cut(s) 530
AatII GACGTC 1 cut(s) 659
Acc36I ACCTGC 2 cut(s) 282, 638
AccII CGCG 3 cut(s) 90, 143, 426
AciI CCGC 5 cut(s) 90, 141, 143, 234, 543
AclWI GGATC 4 cut(s) 149, 162, 188, 257
AcsI RAATTY 2 cut(s) 443, 620
AcuI CTGAAG 1 cut(s) 540
AcyI GRCGYC 1 cut(s) 656
AfiI CCNNNNNNNGG 1 cut(s) 369
AgsI TTSAA 1 cut(s) 574
AjuI GAANNNNNNNTTGG 2 cut(s) 190, 222
AluBI AGCT 3 cut(s) 106, 138, 335
AluI AGCT 3 cut(s) 106, 138, 335
Alw21I GWGCWC 1 cut(s) 140
Alw26I GTCTC 2 cut(s) 367, 497
AlwI GGATC 4 cut(s) 149, 162, 188, 257
AoxI GGCC 4 cut(s) 66, 144, 257, 431
ApoI RAATTY 2 cut(s) 443, 620
ArsI GACNNNNNNTTYG 2 cut(s) 15, 47
AspLEI GCGC 1 cut(s) 426
AspS9I GGNCC 2 cut(s) 390, 432
AsuC2I CCSGG 1 cut(s) 435
AsuHPI GGTGA 4 cut(s) 56, 104, 413, 619
AvaII GGWCC 1 cut(s) 390
BamHI GGATCC 1 cut(s) 154
BanII GRGCYC 1 cut(s) 140
BbsI GAAGAC 3 cut(s) 528, 581, 659
Bbv12I GWGCWC 1 cut(s) 140
BccI CCATC 4 cut(s) 35, 352, 385, 454
BceAI ACGGC 1 cut(s) 343
BciVI GTATCC 1 cut(s) 550
BcnI CCSGG 1 cut(s) 435
BcoDI GTCTC 2 cut(s) 367, 497
BfuAI ACCTGC 2 cut(s) 282, 638
BfuI GTATCC 1 cut(s) 550
BisI GCNGC 1 cut(s) 144
BlsI GCNGC 1 cut(s) 145
Bme1390I CCNGG 1 cut(s) 435
Bme18I GGWCC 1 cut(s) 390
BmgT120I GGNCC 2 cut(s) 390, 432
BmiI GGNNCC 1 cut(s) 156
BmrFI CCNGG 1 cut(s) 435
BpiI GAAGAC 3 cut(s) 528, 581, 659
BpuMI CCSGG 1 cut(s) 435
BsaBI GATNNNNATC 1 cut(s) 210
BsaHI GRCGYC 1 cut(s) 656
BsaI GGTCTC 1 cut(s) 367
BsaJI CCNNGG 2 cut(s) 131, 141
BsaWI WCCGGW 1 cut(s) 119
Bsc4I CCNNNNNNNGG 1 cut(s) 369
Bse1I ACTGG 1 cut(s) 417
Bse3DI GCAATG 1 cut(s) 231
Bse8I GATNNNNATC 1 cut(s) 210
BseDI CCNNGG 2 cut(s) 131, 141
BseGI GGATG 3 cut(s) 126, 243, 469
BseJI GATNNNNATC 1 cut(s) 210
BseLI CCNNNNNNNGG 1 cut(s) 369
BseMI GCAATG 1 cut(s) 231
BseNI ACTGG 1 cut(s) 417
Bsh1236I CGCG 3 cut(s) 90, 143, 426
BshFI GGCC 4 cut(s) 68, 146, 259, 433
BsiHKAI GWGCWC 1 cut(s) 140
BsiSI CCGG 3 cut(s) 120, 363, 435
BslFI GGGAC 1 cut(s) 58
BslI CCNNNNNNNGG 1 cut(s) 369
BsmAI GTCTC 2 cut(s) 367, 497
BsmBI CGTCTC 1 cut(s) 497
BsmFI GGGAC 1 cut(s) 58
BsmI GAATGC 1 cut(s) 345
BsnI GGCC 4 cut(s) 68, 146, 259, 433
Bso31I GGTCTC 1 cut(s) 367
Bsp1286I GDGCHC 1 cut(s) 140
Bsp143I GATC 5 cut(s) 94, 154, 193, 211, 262
Bsp19I CCATGG 1 cut(s) 131
BspACI CCGC 5 cut(s) 90, 141, 143, 234, 543
BspANI GGCC 4 cut(s) 68, 146, 259, 433
BspFNI CGCG 3 cut(s) 90, 143, 426
BspLI GGNNCC 1 cut(s) 156
BspMI ACCTGC 2 cut(s) 282, 638
BspPI GGATC 4 cut(s) 149, 162, 188, 257
BspTNI GGTCTC 1 cut(s) 367
BsrDI GCAATG 1 cut(s) 231
BsrI ACTGG 1 cut(s) 417
BssECI CCNNGG 2 cut(s) 131, 141
BssMI GATC 5 cut(s) 94, 154, 193, 211, 262
BssNI GRCGYC 1 cut(s) 656
BssT1I CCWWGG 1 cut(s) 131
Bst6I CTCTTC 1 cut(s) 154
BstACI GRCGYC 1 cut(s) 656
BstC8I GCNNGC 1 cut(s) 257
BstDEI CTNAG 1 cut(s) 535
BstDSI CCRYGG 2 cut(s) 131, 141
BstF5I GGATG 3 cut(s) 126, 243, 469
BstFNI CGCG 3 cut(s) 90, 143, 426
BstHHI GCGC 1 cut(s) 426
BstKTI GATC 5 cut(s) 97, 157, 196, 214, 265
BstMAI GTCTC 2 cut(s) 367, 497
BstMBI GATC 5 cut(s) 94, 154, 193, 211, 262
BstMWI GCNNNNNNNGC 1 cut(s) 430
BstSCI CCNGG 1 cut(s) 433
BstUI CGCG 3 cut(s) 90, 143, 426
BstV2I GAAGAC 3 cut(s) 528, 581, 659
BstX2I RGATCY 3 cut(s) 154, 193, 262
BstXI CCANNNNNNTGG 1 cut(s) 41
BstYI RGATCY 3 cut(s) 154, 193, 262
BsuI GTATCC 1 cut(s) 550
BsuRI GGCC 4 cut(s) 68, 146, 259, 433
BtgI CCRYGG 2 cut(s) 131, 141
BtsCI GGATG 3 cut(s) 126, 243, 469
BveI ACCTGC 2 cut(s) 282, 638
Cac8I GCNNGC 1 cut(s) 257
CfoI GCGC 1 cut(s) 426
Cfr13I GGNCC 2 cut(s) 390, 432
Cfr42I CCGCGG 1 cut(s) 144
CviAII CATG 2 cut(s) 132, 635
CviJI RGCY 8 cut(s) 68, 106, 138, 146, 259, 335, 433, 602
CviKI_1 RGCY 8 cut(s) 68, 106, 138, 146, 259, 335, 433, 602
DdeI CTNAG 1 cut(s) 535
DpnI GATC 5 cut(s) 96, 156, 195, 213, 264
DpnII GATC 5 cut(s) 94, 154, 193, 211, 262
DrdI GACNNNNNNGTC 1 cut(s) 530
DseDI GACNNNNNNGTC 1 cut(s) 530
Eam1104I CTCTTC 1 cut(s) 154
EarI CTCTTC 1 cut(s) 154
EciI GGCGGA 1 cut(s) 532
Ecl136II GAGCTC 1 cut(s) 138
Eco130I CCWWGG 1 cut(s) 131
Eco24I GRGCYC 1 cut(s) 140
Eco31I GGTCTC 1 cut(s) 367
Eco47I GGWCC 1 cut(s) 390
Eco53kI GAGCTC 1 cut(s) 138
Eco57I CTGAAG 1 cut(s) 540
EcoICRI GAGCTC 1 cut(s) 138
EcoT14I CCWWGG 1 cut(s) 131
EcoT38I GRGCYC 1 cut(s) 140
ErhI CCWWGG 1 cut(s) 131
Esp3I CGTCTC 1 cut(s) 497
FaeI CATG 2 cut(s) 135, 638
FaqI GGGAC 1 cut(s) 58
FatI CATG 2 cut(s) 131, 634
FauI CCCGC 1 cut(s) 227
Fnu4HI GCNGC 1 cut(s) 144
FokI GGATG 3 cut(s) 113, 250, 476
FriOI GRGCYC 1 cut(s) 140
Fsp4HI GCNGC 1 cut(s) 144
GlaI GCGC 1 cut(s) 425
GluI GCNGC 1 cut(s) 144
HaeIII GGCC 4 cut(s) 68, 146, 259, 433
HapII CCGG 3 cut(s) 120, 363, 435
HhaI GCGC 1 cut(s) 426
Hin1I GRCGYC 1 cut(s) 656
Hin1II CATG 2 cut(s) 135, 638
Hin6I GCGC 1 cut(s) 424
HinP1I GCGC 1 cut(s) 424
HindIII AAGCTT 1 cut(s) 104
HinfI GANTC 3 cut(s) 123, 206, 353
HpaII CCGG 3 cut(s) 120, 363, 435
HphI GGTGA 4 cut(s) 56, 104, 413, 619
Hpy166II GTNNAC 1 cut(s) 496
Hpy188I TCNGA 3 cut(s) 154, 169, 211
Hpy188III TCNNGA 1 cut(s) 649
Hpy8I GTNNAC 1 cut(s) 496
HpyAV CCTTC 1 cut(s) 224
HpyCH4IV ACGT 2 cut(s) 27, 656
HpyCH4V TGCA 4 cut(s) 174, 182, 224, 255
HpyF10VI GCNNNNNNNGC 1 cut(s) 430
HpyF3I CTNAG 1 cut(s) 535
HpySE526I ACGT 2 cut(s) 27, 656
Hsp92I GRCGYC 1 cut(s) 656
Hsp92II CATG 2 cut(s) 135, 638
HspAI GCGC 1 cut(s) 424
KspI CCGCGG 1 cut(s) 144
Kzo9I GATC 5 cut(s) 94, 154, 193, 211, 262
LmnI GCTCC 2 cut(s) 135, 143
MaeII ACGT 2 cut(s) 27, 656
MalI GATC 5 cut(s) 96, 156, 195, 213, 264
MboI GATC 5 cut(s) 94, 154, 193, 211, 262
MboII GAAGA 6 cut(s) 141, 313, 533, 586, 616, 664
MflI RGATCY 3 cut(s) 154, 193, 262
MhlI GDGCHC 1 cut(s) 140
MluCI AATT 2 cut(s) 443, 620
MnlI CCTC 5 cut(s) 157, 403, 556, 568, 592
MseI TTAA 3 cut(s) 102, 269, 455
MslI CAYNNNNRTG 3 cut(s) 39, 560, 639
MspA1I CMGCKG 1 cut(s) 143
MspI CCGG 3 cut(s) 120, 363, 435
MspR9I CCNGG 1 cut(s) 435
Mva1269I GAATGC 1 cut(s) 345
MvnI CGCG 3 cut(s) 90, 143, 426
MwoI GCNNNNNNNGC 1 cut(s) 430
NciI CCSGG 1 cut(s) 435
NcoI CCATGG 1 cut(s) 131
NdeII GATC 5 cut(s) 94, 154, 193, 211, 262
NlaIII CATG 2 cut(s) 135, 638
NlaIV GGNNCC 1 cut(s) 156
PaqCI CACCTGC 2 cut(s) 282, 638
PcsI WCGNNNNNNNCGW 1 cut(s) 94
PctI GAATGC 1 cut(s) 345
PfeI GAWTC 3 cut(s) 123, 206, 353
PflFI GACNNNGTC 1 cut(s) 29
PkrI GCNGC 1 cut(s) 145
Psp124BI GAGCTC 1 cut(s) 140
PspN4I GGNNCC 1 cut(s) 156
PspPI GGNCC 2 cut(s) 390, 432
PsuI RGATCY 3 cut(s) 154, 193, 262
PsyI GACNNNGTC 1 cut(s) 29
RseI CAYNNNNRTG 3 cut(s) 39, 560, 639
SacI GAGCTC 1 cut(s) 140
SacII CCGCGG 1 cut(s) 144
SaqAI TTAA 3 cut(s) 102, 269, 455
SatI GCNGC 1 cut(s) 144
Sau3AI GATC 5 cut(s) 94, 154, 193, 211, 262
Sau96I GGNCC 2 cut(s) 390, 432
ScrFI CCNGG 1 cut(s) 435
SduI GDGCHC 1 cut(s) 140
Sfr303I CCGCGG 1 cut(s) 144
SgrBI CCGCGG 1 cut(s) 144
SinI GGWCC 1 cut(s) 390
SmiMI CAYNNNNRTG 3 cut(s) 39, 560, 639
Sse9I AATT 2 cut(s) 443, 620
SsiI CCGC 5 cut(s) 90, 141, 143, 234, 543
SspI AATATT 2 cut(s) 220, 330
SstI GAGCTC 1 cut(s) 140
StyD4I CCNGG 1 cut(s) 433
StyI CCWWGG 1 cut(s) 131
TaiI ACGT 2 cut(s) 30, 659
TasI AATT 2 cut(s) 443, 620
TauI GCSGC 1 cut(s) 146
TfiI GAWTC 3 cut(s) 123, 206, 353
Tru1I TTAA 3 cut(s) 102, 269, 455
Tru9I TTAA 3 cut(s) 102, 269, 455
TspDTI ATGAA 1 cut(s) 254
Tth111I GACNNNGTC 1 cut(s) 29
VpaK11BI GGWCC 1 cut(s) 390
XapI RAATTY 2 cut(s) 443, 620
XcmI CCANNNNNNNNNTGG 1 cut(s) 384
ZraI GACGTC 1 cut(s) 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.