Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Beta-prop_KIB1-4 | PF03478 | 198 - 507 | 6.4e-28 | KIB1-4 beta-propeller |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 35 |
| AccI | GTMKAC | 1 cut(s) | 827 |
| AccII | CGCG | 1 cut(s) | 1305 |
| AciI | CCGC | 5 cut(s) | 250, 572, 646, 940, 1214 |
| AclWI | GGATC | 7 cut(s) | 145, 304, 317, 1127, 1325, 1338, 1588 |
| AfaI | GTAC | 5 cut(s) | 361, 370, 402, 1150, 1415 |
| AfeI | AGCGCT | 1 cut(s) | 69 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 59, 797, 954, 985, 1220, 1617 |
| AflIII | ACRYGT | 2 cut(s) | 1771, 1935 |
| AgsI | TTSAA | 6 cut(s) | 113, 787, 1405, 1543, 1649, 1742 |
| AhlI | ACTAGT | 1 cut(s) | 380 |
| AleI | CACNNNNGTG | 2 cut(s) | 907, 909 |
| AluBI | AGCT | 7 cut(s) | 356, 491, 881, 1061, 1154, 1624, 1790 |
| AluI | AGCT | 7 cut(s) | 356, 491, 881, 1061, 1154, 1624, 1790 |
| Alw21I | GWGCWC | 3 cut(s) | 558, 759, 805 |
| AlwI | GGATC | 7 cut(s) | 145, 304, 317, 1127, 1325, 1338, 1588 |
| Aor51HI | AGCGCT | 1 cut(s) | 69 |
| AoxI | GGCC | 8 cut(s) | 50, 854, 899, 937, 945, 956, 1491, 1531 |
| ApeKI | GCWGC | 6 cut(s) | 206, 491, 522, 1517, 1520, 1826 |
| AspA2I | CCTAGG | 1 cut(s) | 1439 |
| AspLEI | GCGC | 3 cut(s) | 70, 1307, 1364 |
| AspS9I | GGNCC | 4 cut(s) | 51, 390, 957, 975 |
| AsuHPI | GGTGA | 5 cut(s) | 38, 726, 1396, 1469, 1478 |
| AsuII | TTCGAA | 1 cut(s) | 1913 |
| AvaII | GGWCC | 2 cut(s) | 390, 975 |
| AvrII | CCTAGG | 1 cut(s) | 1439 |
| AxyI | CCTNAGG | 1 cut(s) | 1380 |
| BamHI | GGATCC | 2 cut(s) | 309, 1330 |
| BanII | GRGCYC | 1 cut(s) | 1011 |
| BauI | CACGAG | 1 cut(s) | 907 |
| BbsI | GAAGAC | 1 cut(s) | 1550 |
| Bbv12I | GWGCWC | 3 cut(s) | 558, 759, 805 |
| BbvI | GCAGC | 6 cut(s) | 193, 478, 509, 1504, 1507, 1813 |
| BceAI | ACGGC | 1 cut(s) | 67 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 324, 358, 1172, 1206 |
| BciVI | GTATCC | 1 cut(s) | 215 |
| BclI | TGATCA | 2 cut(s) | 678, 1722 |
| BcuI | ACTAGT | 1 cut(s) | 380 |
| BfaI | CTAG | 5 cut(s) | 357, 381, 1262, 1440, 1899 |
| BfmI | CTRYAG | 2 cut(s) | 952, 1056 |
| BfoI | RGCGCY | 1 cut(s) | 71 |
| BfuI | GTATCC | 1 cut(s) | 215 |
| BisI | GCNGC | 7 cut(s) | 207, 492, 523, 940, 1518, 1521, 1827 |
| BlnI | CCTAGG | 1 cut(s) | 1439 |
| BlsI | GCNGC | 7 cut(s) | 208, 493, 524, 941, 1519, 1522, 1828 |
| BmcAI | AGTACT | 4 cut(s) | 361, 370, 402, 1415 |
| Bme18I | GGWCC | 2 cut(s) | 390, 975 |
| BmgT120I | GGNCC | 4 cut(s) | 51, 390, 957, 975 |
| BmiI | GGNNCC | 3 cut(s) | 311, 977, 1332 |
| BmrI | ACTGGG | 1 cut(s) | 627 |
| BmuI | ACTGGG | 1 cut(s) | 627 |
| BpiI | GAAGAC | 1 cut(s) | 1550 |
| BpmI | CTGGAG | 1 cut(s) | 1430 |
| Bpu14I | TTCGAA | 1 cut(s) | 1913 |
| BpuEI | CTTGAG | 2 cut(s) | 789, 1940 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1890 |
| BsaJI | CCNNGG | 5 cut(s) | 393, 545, 1071, 1439, 1616 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 59, 797, 954, 985, 1220, 1617 |
| Bse118I | RCCGGY | 1 cut(s) | 48 |
| Bse1I | ACTGG | 4 cut(s) | 21, 366, 633, 1413 |
| Bse21I | CCTNAGG | 1 cut(s) | 1380 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1890 |
| BseDI | CCNNGG | 5 cut(s) | 393, 545, 1071, 1439, 1616 |
| BseGI | GGATG | 2 cut(s) | 1107, 1930 |
| BseJI | GATNNNNATC | 1 cut(s) | 1890 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 59, 797, 954, 985, 1220, 1617 |
| BseMII | CTCAG | 3 cut(s) | 551, 772, 810 |
| BseNI | ACTGG | 4 cut(s) | 21, 366, 633, 1413 |
| BseRI | GAGGAG | 4 cut(s) | 525, 1004, 1136, 1139 |
| BseXI | GCAGC | 6 cut(s) | 193, 478, 509, 1504, 1507, 1813 |
| BsgI | GTGCAG | 1 cut(s) | 489 |
| Bsh1236I | CGCG | 1 cut(s) | 1305 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1657 |
| BshFI | GGCC | 8 cut(s) | 52, 856, 901, 939, 947, 958, 1493, 1533 |
| BsiEI | CGRYCG | 1 cut(s) | 1657 |
| BsiHKAI | GWGCWC | 3 cut(s) | 558, 759, 805 |
| BsiSI | CCGG | 1 cut(s) | 49 |
| BslFI | GGGAC | 3 cut(s) | 1092, 1333, 1740 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 59, 797, 954, 985, 1220, 1617 |
| BsmFI | GGGAC | 3 cut(s) | 1092, 1333, 1740 |
| BsmI | GAATGC | 2 cut(s) | 236, 656 |
| BsnI | GGCC | 8 cut(s) | 52, 856, 901, 939, 947, 958, 1493, 1533 |
| Bsp119I | TTCGAA | 1 cut(s) | 1913 |
| Bsp1286I | GDGCHC | 4 cut(s) | 558, 759, 805, 1011 |
| Bsp1407I | TGTACA | 1 cut(s) | 1148 |
| Bsp19I | CCATGG | 3 cut(s) | 545, 1071, 1616 |
| BspACI | CCGC | 5 cut(s) | 250, 572, 646, 940, 1214 |
| BspANI | GGCC | 8 cut(s) | 52, 856, 901, 939, 947, 958, 1493, 1533 |
| BspCNI | CTCAG | 3 cut(s) | 550, 771, 809 |
| BspFNI | CGCG | 1 cut(s) | 1305 |
| BspHI | TCATGA | 1 cut(s) | 864 |
| BspLI | GGNNCC | 3 cut(s) | 311, 977, 1332 |
| BspPI | GGATC | 7 cut(s) | 145, 304, 317, 1127, 1325, 1338, 1588 |
| BspT104I | TTCGAA | 1 cut(s) | 1913 |
| BsrFI | RCCGGY | 1 cut(s) | 48 |
| BsrGI | TGTACA | 1 cut(s) | 1148 |
| BsrI | ACTGG | 4 cut(s) | 21, 366, 633, 1413 |
| BssAI | RCCGGY | 1 cut(s) | 48 |
| BssECI | CCNNGG | 5 cut(s) | 393, 545, 1071, 1439, 1616 |
| BssSI | CACGAG | 1 cut(s) | 907 |
| BssT1I | CCWWGG | 4 cut(s) | 545, 1071, 1439, 1616 |
| Bst2BI | CACGAG | 1 cut(s) | 907 |
| Bst4CI | ACNGT | 4 cut(s) | 825, 1418, 1834, 1849 |
| Bst6I | CTCTTC | 3 cut(s) | 256, 1516, 1642 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 522 |
| BstAUI | TGTACA | 1 cut(s) | 1148 |
| BstBI | TTCGAA | 1 cut(s) | 1913 |
| BstC8I | GCNNGC | 5 cut(s) | 188, 276, 489, 514, 1495 |
| BstDEI | CTNAG | 6 cut(s) | 537, 758, 796, 845, 1380, 1699 |
| BstDSI | CCRYGG | 3 cut(s) | 545, 1071, 1616 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 952, 983 |
| BstF5I | GGATG | 2 cut(s) | 1107, 1930 |
| BstFNI | CGCG | 1 cut(s) | 1305 |
| BstH2I | RGCGCY | 1 cut(s) | 71 |
| BstHHI | GCGC | 3 cut(s) | 70, 1307, 1364 |
| BstMCI | CGRYCG | 1 cut(s) | 1657 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 280, 362, 522, 846, 1058, 1151, 1494, 1692 |
| BstNSI | RCATGY | 2 cut(s) | 1555, 1775 |
| BstSFI | CTRYAG | 2 cut(s) | 952, 1056 |
| BstUI | CGCG | 1 cut(s) | 1305 |
| BstV1I | GCAGC | 6 cut(s) | 193, 478, 509, 1504, 1507, 1813 |
| BstV2I | GAAGAC | 1 cut(s) | 1550 |
| BstX2I | RGATCY | 5 cut(s) | 150, 309, 1132, 1330, 1580 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1358 |
| BstYI | RGATCY | 5 cut(s) | 150, 309, 1132, 1330, 1580 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1380 |
| BsuI | GTATCC | 1 cut(s) | 215 |
| BsuRI | GGCC | 8 cut(s) | 52, 856, 901, 939, 947, 958, 1493, 1533 |
| BtgI | CCRYGG | 3 cut(s) | 545, 1071, 1616 |
| BtsCI | GGATG | 2 cut(s) | 1107, 1930 |
| BtsIMutI | CAGTG | 3 cut(s) | 14, 640, 960 |
| Cac8I | GCNNGC | 5 cut(s) | 188, 276, 489, 514, 1495 |
| CciI | TCATGA | 1 cut(s) | 864 |
| CfoI | GCGC | 3 cut(s) | 70, 1307, 1364 |
| Cfr10I | RCCGGY | 1 cut(s) | 48 |
| Cfr13I | GGNCC | 4 cut(s) | 51, 390, 957, 975 |
| CseI | GACGC | 1 cut(s) | 692 |
| Csp6I | GTAC | 5 cut(s) | 360, 369, 401, 1149, 1414 |
| CviQI | GTAC | 5 cut(s) | 360, 369, 401, 1149, 1414 |
| DdeI | CTNAG | 6 cut(s) | 537, 758, 796, 845, 1380, 1699 |
| Eam1104I | CTCTTC | 3 cut(s) | 256, 1516, 1642 |
| EarI | CTCTTC | 3 cut(s) | 256, 1516, 1642 |
| Eco130I | CCWWGG | 4 cut(s) | 545, 1071, 1439, 1616 |
| Eco24I | GRGCYC | 1 cut(s) | 1011 |
| Eco32I | GATATC | 2 cut(s) | 447, 1735 |
| Eco47I | GGWCC | 2 cut(s) | 390, 975 |
| Eco47III | AGCGCT | 1 cut(s) | 69 |
| Eco81I | CCTNAGG | 1 cut(s) | 1380 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 952, 983 |
| EcoRV | GATATC | 2 cut(s) | 447, 1735 |
| EcoT14I | CCWWGG | 4 cut(s) | 545, 1071, 1439, 1616 |
| EcoT22I | ATGCAT | 1 cut(s) | 1557 |
| EcoT38I | GRGCYC | 1 cut(s) | 1011 |
| ErhI | CCWWGG | 4 cut(s) | 545, 1071, 1439, 1616 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 149, 181, 322, 354, 798, 830 |
| FaqI | GGGAC | 3 cut(s) | 1092, 1333, 1740 |
| FauI | CCCGC | 1 cut(s) | 639 |
| FauNDI | CATATG | 1 cut(s) | 1141 |
| FbaI | TGATCA | 2 cut(s) | 678, 1722 |
| FblI | GTMKAC | 1 cut(s) | 827 |
| Fnu4HI | GCNGC | 7 cut(s) | 207, 492, 523, 940, 1518, 1521, 1827 |
| FokI | GGATG | 2 cut(s) | 1094, 1937 |
| FriOI | GRGCYC | 1 cut(s) | 1011 |
| Fsp4HI | GCNGC | 7 cut(s) | 207, 492, 523, 940, 1518, 1521, 1827 |
| FspBI | CTAG | 5 cut(s) | 357, 381, 1262, 1440, 1899 |
| GlaI | GCGC | 3 cut(s) | 69, 1306, 1363 |
| GluI | GCNGC | 7 cut(s) | 207, 492, 523, 940, 1518, 1521, 1827 |
| GsuI | CTGGAG | 1 cut(s) | 1430 |
| HaeII | RGCGCY | 1 cut(s) | 71 |
| HaeIII | GGCC | 8 cut(s) | 52, 856, 901, 939, 947, 958, 1493, 1533 |
| HapII | CCGG | 1 cut(s) | 49 |
| HgaI | GACGC | 1 cut(s) | 692 |
| HhaI | GCGC | 3 cut(s) | 70, 1307, 1364 |
| Hin6I | GCGC | 3 cut(s) | 68, 1305, 1362 |
| HinP1I | GCGC | 3 cut(s) | 68, 1305, 1362 |
| HindIII | AAGCTT | 1 cut(s) | 1622 |
| HinfI | GANTC | 7 cut(s) | 73, 292, 427, 721, 787, 1559, 1910 |
| HpaII | CCGG | 1 cut(s) | 49 |
| HphI | GGTGA | 5 cut(s) | 38, 726, 1396, 1469, 1478 |
| Hpy166II | GTNNAC | 2 cut(s) | 619, 828 |
| Hpy188I | TCNGA | 7 cut(s) | 199, 314, 394, 451, 889, 1021, 1473 |
| Hpy188III | TCNNGA | 7 cut(s) | 258, 707, 718, 784, 865, 1665, 1778 |
| Hpy8I | GTNNAC | 2 cut(s) | 619, 828 |
| HpyAV | CCTTC | 5 cut(s) | 186, 607, 790, 929, 958 |
| HpyCH4III | ACNGT | 4 cut(s) | 825, 1418, 1834, 1849 |
| HpyCH4IV | ACGT | 4 cut(s) | 133, 436, 744, 1935 |
| HpyCH4V | TGCA | 7 cut(s) | 236, 470, 840, 1183, 1244, 1555, 1673 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 280, 362, 522, 846, 1058, 1151, 1494, 1692 |
| HpyF3I | CTNAG | 6 cut(s) | 537, 758, 796, 845, 1380, 1699 |
| HpySE526I | ACGT | 4 cut(s) | 133, 436, 744, 1935 |
| HspAI | GCGC | 3 cut(s) | 68, 1305, 1362 |
| Ksp22I | TGATCA | 2 cut(s) | 678, 1722 |
| LmnI | GCTCC | 3 cut(s) | 538, 1441, 1787 |
| Lsp1109I | GCAGC | 6 cut(s) | 193, 478, 509, 1504, 1507, 1813 |
| MaeI | CTAG | 5 cut(s) | 357, 381, 1262, 1440, 1899 |
| MaeII | ACGT | 4 cut(s) | 133, 436, 744, 1935 |
| MaeIII | GTNAC | 3 cut(s) | 808, 819, 1706 |
| MfeI | CAATTG | 3 cut(s) | 507, 663, 1690 |
| MflI | RGATCY | 5 cut(s) | 150, 309, 1132, 1330, 1580 |
| MhlI | GDGCHC | 4 cut(s) | 558, 759, 805, 1011 |
| MlyI | GAGTC | 1 cut(s) | 1553 |
| MmeI | TCCRAC | 2 cut(s) | 1710, 1765 |
| Mph1103I | ATGCAT | 1 cut(s) | 1557 |
| MseI | TTAA | 4 cut(s) | 747, 984, 1206, 1677 |
| MslI | CAYNNNNRTG | 3 cut(s) | 907, 909, 1356 |
| MspI | CCGG | 1 cut(s) | 49 |
| MunI | CAATTG | 3 cut(s) | 507, 663, 1690 |
| Mva1269I | GAATGC | 2 cut(s) | 236, 656 |
| MvnI | CGCG | 1 cut(s) | 1305 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 280, 362, 522, 846, 1058, 1151, 1494, 1692 |
| NcoI | CCATGG | 3 cut(s) | 545, 1071, 1616 |
| NdeI | CATATG | 1 cut(s) | 1141 |
| NlaIV | GGNNCC | 3 cut(s) | 311, 977, 1332 |
| NmeAIII | GCCGAG | 1 cut(s) | 259 |
| NmuCI | GTSAC | 3 cut(s) | 808, 819, 1706 |
| NsiI | ATGCAT | 1 cut(s) | 1557 |
| NspI | RCATGY | 2 cut(s) | 1555, 1775 |
| NspV | TTCGAA | 1 cut(s) | 1913 |
| OliI | CACNNNNGTG | 2 cut(s) | 907, 909 |
| PagI | TCATGA | 1 cut(s) | 864 |
| PciI | ACATGT | 1 cut(s) | 1771 |
| PctI | GAATGC | 2 cut(s) | 236, 656 |
| PfeI | GAWTC | 6 cut(s) | 73, 292, 427, 721, 787, 1910 |
| PkrI | GCNGC | 7 cut(s) | 208, 493, 524, 941, 1519, 1522, 1828 |
| Ple19I | CGATCG | 1 cut(s) | 1657 |
| PleI | GAGTC | 1 cut(s) | 1553 |
| PpsI | GAGTC | 1 cut(s) | 1553 |
| PscI | ACATGT | 1 cut(s) | 1771 |
| PsiI | TTATAA | 1 cut(s) | 35 |
| PspN4I | GGNNCC | 3 cut(s) | 311, 977, 1332 |
| PspPI | GGNCC | 4 cut(s) | 51, 390, 957, 975 |
| PsuI | RGATCY | 5 cut(s) | 150, 309, 1132, 1330, 1580 |
| PvuI | CGATCG | 1 cut(s) | 1657 |
| RsaI | GTAC | 5 cut(s) | 361, 370, 402, 1150, 1415 |
| RsaNI | GTAC | 5 cut(s) | 360, 369, 401, 1149, 1414 |
| RseI | CAYNNNNRTG | 3 cut(s) | 907, 909, 1356 |
| SaqAI | TTAA | 4 cut(s) | 747, 984, 1206, 1677 |
| SatI | GCNGC | 7 cut(s) | 207, 492, 523, 940, 1518, 1521, 1827 |
| Sau96I | GGNCC | 4 cut(s) | 51, 390, 957, 975 |
| ScaI | AGTACT | 4 cut(s) | 361, 370, 402, 1415 |
| SchI | GAGTC | 1 cut(s) | 1553 |
| SduI | GDGCHC | 4 cut(s) | 558, 759, 805, 1011 |
| SfcI | CTRYAG | 2 cut(s) | 952, 1056 |
| SfuI | TTCGAA | 1 cut(s) | 1913 |
| SinI | GGWCC | 2 cut(s) | 390, 975 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 907, 909, 1356 |
| SmlI | CTYRAG | 2 cut(s) | 804, 1919 |
| SmoI | CTYRAG | 2 cut(s) | 804, 1919 |
| SpeI | ACTAGT | 1 cut(s) | 380 |
| SsiI | CCGC | 5 cut(s) | 250, 572, 646, 940, 1214 |
| SspI | AATATT | 4 cut(s) | 1032, 1066, 1115, 1429 |
| SspMI | CTAG | 5 cut(s) | 357, 381, 1262, 1440, 1899 |
| StyI | CCWWGG | 4 cut(s) | 545, 1071, 1439, 1616 |
| TaaI | ACNGT | 4 cut(s) | 825, 1418, 1834, 1849 |
| TaiI | ACGT | 4 cut(s) | 136, 439, 747, 1938 |
| TaqI | TCGA | 4 cut(s) | 1396, 1657, 1809, 1913 |
| TatI | WGTACW | 5 cut(s) | 359, 368, 400, 1148, 1413 |
| TauI | GCSGC | 1 cut(s) | 942 |
| TfiI | GAWTC | 6 cut(s) | 73, 292, 427, 721, 787, 1910 |
| Tru1I | TTAA | 4 cut(s) | 747, 984, 1206, 1677 |
| Tru9I | TTAA | 4 cut(s) | 747, 984, 1206, 1677 |
| TscAI | CASTG | 3 cut(s) | 21, 640, 967 |
| TseFI | GTSAC | 3 cut(s) | 808, 819, 1706 |
| TseI | GCWGC | 6 cut(s) | 206, 491, 522, 1517, 1520, 1826 |
| Tsp45I | GTSAC | 3 cut(s) | 808, 819, 1706 |
| TspDTI | ATGAA | 6 cut(s) | 17, 289, 471, 881, 1421, 1902 |
| TspGWI | ACGGA | 2 cut(s) | 143, 807 |
| TspRI | CASTG | 3 cut(s) | 21, 640, 967 |
| VpaK11BI | GGWCC | 2 cut(s) | 390, 975 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 952, 983 |
| XceI | RCATGY | 2 cut(s) | 1555, 1775 |
| XmaJI | CCTAGG | 1 cut(s) | 1439 |
| XmiI | GTMKAC | 1 cut(s) | 827 |
| XspI | CTAG | 5 cut(s) | 357, 381, 1262, 1440, 1899 |
| ZrmI | AGTACT | 4 cut(s) | 361, 370, 402, 1415 |
| Zsp2I | ATGCAT | 1 cut(s) | 1557 |