Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Beta-prop_KIB1-4 | PF03478 | 80 - 327 | 5.1e-29 | KIB1-4 beta-propeller |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 616 |
| AccB1I | GGYRCC | 1 cut(s) | 215 |
| AccI | GTMKAC | 3 cut(s) | 345, 559, 642 |
| AciI | CCGC | 1 cut(s) | 285 |
| AclWI | GGATC | 2 cut(s) | 325, 1029 |
| AcuI | CTGAAG | 1 cut(s) | 471 |
| AcyI | GRCGYC | 1 cut(s) | 613 |
| AfaI | GTAC | 2 cut(s) | 358, 764 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 150, 330, 437, 589, 901 |
| AgsI | TTSAA | 2 cut(s) | 382, 682 |
| AhlI | ACTAGT | 1 cut(s) | 359 |
| AjnI | CCWGG | 1 cut(s) | 303 |
| AluBI | AGCT | 5 cut(s) | 458, 491, 660, 769, 1043 |
| AluI | AGCT | 5 cut(s) | 458, 491, 660, 769, 1043 |
| Alw21I | GWGCWC | 1 cut(s) | 1045 |
| AlwI | GGATC | 2 cut(s) | 325, 1029 |
| Ama87I | CYCGRG | 1 cut(s) | 45 |
| ApeKI | GCWGC | 2 cut(s) | 119, 521 |
| AspS9I | GGNCC | 1 cut(s) | 579 |
| AsuC2I | CCSGG | 1 cut(s) | 56 |
| AsuHPI | GGTGA | 2 cut(s) | 40, 896 |
| AsuNHI | GCTAGC | 1 cut(s) | 136 |
| AvaI | CYCGRG | 1 cut(s) | 45 |
| AvaII | GGWCC | 1 cut(s) | 579 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 348, 381 |
| BanI | GGYRCC | 1 cut(s) | 215 |
| BanII | GRGCYC | 1 cut(s) | 1045 |
| Bbv12I | GWGCWC | 1 cut(s) | 1045 |
| BbvI | GCAGC | 2 cut(s) | 131, 508 |
| BccI | CCATC | 3 cut(s) | 629, 789, 875 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 388, 422 |
| BciT130I | CCWGG | 1 cut(s) | 305 |
| BclI | TGATCA | 1 cut(s) | 336 |
| BcnI | CCSGG | 1 cut(s) | 56 |
| BcuI | ACTAGT | 1 cut(s) | 359 |
| BfaI | CTAG | 4 cut(s) | 137, 360, 564, 906 |
| BfmI | CTRYAG | 2 cut(s) | 522, 556 |
| BisI | GCNGC | 2 cut(s) | 120, 522 |
| BlsI | GCNGC | 2 cut(s) | 121, 523 |
| Bme1390I | CCNGG | 2 cut(s) | 56, 305 |
| Bme18I | GGWCC | 1 cut(s) | 579 |
| BmeT110I | CYCGRG | 1 cut(s) | 45 |
| BmgT120I | GGNCC | 1 cut(s) | 579 |
| BmiI | GGNNCC | 2 cut(s) | 217, 581 |
| BmrFI | CCNGG | 2 cut(s) | 56, 305 |
| BmsI | GCATC | 5 cut(s) | 444, 701, 752, 933, 1005 |
| BmtI | GCTAGC | 1 cut(s) | 140 |
| BpmI | CTGGAG | 1 cut(s) | 791 |
| BpuMI | CCSGG | 1 cut(s) | 56 |
| BsaBI | GATNNNNATC | 1 cut(s) | 885 |
| BsaHI | GRCGYC | 1 cut(s) | 613 |
| BsaJI | CCNNGG | 3 cut(s) | 219, 324, 349 |
| BsaWI | WCCGGW | 1 cut(s) | 108 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 150, 330, 437, 589, 901 |
| Bse3DI | GCAATG | 1 cut(s) | 232 |
| Bse8I | GATNNNNATC | 1 cut(s) | 885 |
| BseBI | CCWGG | 1 cut(s) | 305 |
| BseDI | CCNNGG | 3 cut(s) | 219, 324, 349 |
| BseGI | GGATG | 2 cut(s) | 886, 970 |
| BseJI | GATNNNNATC | 1 cut(s) | 885 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 150, 330, 437, 589, 901 |
| BseMI | GCAATG | 1 cut(s) | 232 |
| BseMII | CTCAG | 2 cut(s) | 233, 827 |
| BseRI | GAGGAG | 2 cut(s) | 174, 1035 |
| BseXI | GCAGC | 2 cut(s) | 131, 508 |
| BseYI | CCCAGC | 1 cut(s) | 1031 |
| BsgI | GTGCAG | 1 cut(s) | 138 |
| BshNI | GGYRCC | 1 cut(s) | 215 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1045 |
| BsiHKCI | CYCGRG | 1 cut(s) | 45 |
| BsiSI | CCGG | 3 cut(s) | 56, 109, 1049 |
| BslFI | GGGAC | 1 cut(s) | 267 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 150, 330, 437, 589, 901 |
| BsmFI | GGGAC | 1 cut(s) | 267 |
| BsoBI | CYCGRG | 1 cut(s) | 45 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1045 |
| Bsp1407I | TGTACA | 1 cut(s) | 762 |
| Bsp143I | GATC | 6 cut(s) | 128, 229, 317, 336, 886, 1021 |
| Bsp19I | CCATGG | 1 cut(s) | 349 |
| BspACI | CCGC | 1 cut(s) | 285 |
| BspCNI | CTCAG | 2 cut(s) | 234, 828 |
| BspHI | TCATGA | 1 cut(s) | 721 |
| BspLI | GGNNCC | 2 cut(s) | 217, 581 |
| BspMAI | CTGCAG | 1 cut(s) | 526 |
| BspOI | GCTAGC | 1 cut(s) | 140 |
| BspPI | GGATC | 2 cut(s) | 325, 1029 |
| BspT107I | GGYRCC | 1 cut(s) | 215 |
| BsrDI | GCAATG | 1 cut(s) | 232 |
| BsrGI | TGTACA | 1 cut(s) | 762 |
| BssECI | CCNNGG | 3 cut(s) | 219, 324, 349 |
| BssMI | GATC | 6 cut(s) | 128, 229, 317, 336, 886, 1021 |
| BssNI | GRCGYC | 1 cut(s) | 613 |
| BssT1I | CCWWGG | 1 cut(s) | 349 |
| Bst2UI | CCWGG | 1 cut(s) | 305 |
| Bst4CI | ACNGT | 2 cut(s) | 592, 751 |
| Bst6I | CTCTTC | 2 cut(s) | 180, 944 |
| BstACI | GRCGYC | 1 cut(s) | 613 |
| BstAUI | TGTACA | 1 cut(s) | 762 |
| BstC8I | GCNNGC | 2 cut(s) | 138, 163 |
| BstDEI | CTNAG | 3 cut(s) | 242, 248, 836 |
| BstDSI | CCRYGG | 1 cut(s) | 349 |
| BstF5I | GGATG | 2 cut(s) | 886, 970 |
| BstKTI | GATC | 6 cut(s) | 131, 232, 320, 339, 889, 1024 |
| BstMBI | GATC | 6 cut(s) | 128, 229, 317, 336, 886, 1021 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1049 |
| BstNI | CCWGG | 1 cut(s) | 305 |
| BstSCI | CCNGG | 2 cut(s) | 54, 303 |
| BstSFI | CTRYAG | 2 cut(s) | 522, 556 |
| BstV1I | GCAGC | 2 cut(s) | 131, 508 |
| BtgI | CCRYGG | 1 cut(s) | 349 |
| BtsCI | GGATG | 2 cut(s) | 886, 970 |
| Cac8I | GCNNGC | 2 cut(s) | 138, 163 |
| CciI | TCATGA | 1 cut(s) | 721 |
| Cfr13I | GGNCC | 1 cut(s) | 579 |
| Csp6I | GTAC | 2 cut(s) | 357, 763 |
| CviAII | CATG | 8 cut(s) | 195, 340, 350, 406, 432, 510, 576, 722 |
| CviQI | GTAC | 2 cut(s) | 357, 763 |
| DdeI | CTNAG | 3 cut(s) | 242, 248, 836 |
| DpnI | GATC | 6 cut(s) | 130, 231, 319, 338, 888, 1023 |
| DpnII | GATC | 6 cut(s) | 128, 229, 317, 336, 886, 1021 |
| Eam1104I | CTCTTC | 2 cut(s) | 180, 944 |
| EarI | CTCTTC | 2 cut(s) | 180, 944 |
| Ecl136II | GAGCTC | 1 cut(s) | 1043 |
| Eco130I | CCWWGG | 1 cut(s) | 349 |
| Eco24I | GRGCYC | 1 cut(s) | 1045 |
| Eco47I | GGWCC | 1 cut(s) | 579 |
| Eco53kI | GAGCTC | 1 cut(s) | 1043 |
| Eco57I | CTGAAG | 1 cut(s) | 471 |
| Eco88I | CYCGRG | 1 cut(s) | 45 |
| EcoICRI | GAGCTC | 1 cut(s) | 1043 |
| EcoRII | CCWGG | 1 cut(s) | 303 |
| EcoT14I | CCWWGG | 1 cut(s) | 349 |
| EcoT22I | ATGCAT | 1 cut(s) | 437 |
| EcoT38I | GRGCYC | 1 cut(s) | 1045 |
| ErhI | CCWWGG | 1 cut(s) | 349 |
| FaeI | CATG | 8 cut(s) | 198, 343, 353, 409, 435, 513, 579, 725 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 115, 147 |
| FaqI | GGGAC | 1 cut(s) | 267 |
| FatI | CATG | 8 cut(s) | 194, 339, 349, 405, 431, 509, 575, 721 |
| FauI | CCCGC | 1 cut(s) | 292 |
| FbaI | TGATCA | 1 cut(s) | 336 |
| FblI | GTMKAC | 3 cut(s) | 345, 559, 642 |
| Fnu4HI | GCNGC | 2 cut(s) | 120, 522 |
| FokI | GGATG | 2 cut(s) | 893, 977 |
| FriOI | GRGCYC | 1 cut(s) | 1045 |
| Fsp4HI | GCNGC | 2 cut(s) | 120, 522 |
| FspBI | CTAG | 4 cut(s) | 137, 360, 564, 906 |
| GluI | GCNGC | 2 cut(s) | 120, 522 |
| GsaI | CCCAGC | 1 cut(s) | 1035 |
| GsuI | CTGGAG | 1 cut(s) | 791 |
| HapII | CCGG | 3 cut(s) | 56, 109, 1049 |
| Hin1I | GRCGYC | 1 cut(s) | 613 |
| Hin1II | CATG | 8 cut(s) | 198, 343, 353, 409, 435, 513, 579, 725 |
| HincII | GTYRAC | 1 cut(s) | 346 |
| HindII | GTYRAC | 1 cut(s) | 346 |
| HindIII | AAGCTT | 1 cut(s) | 456 |
| HinfI | GANTC | 8 cut(s) | 76, 87, 244, 280, 382, 402, 639, 686 |
| HpaII | CCGG | 3 cut(s) | 56, 109, 1049 |
| HphI | GGTGA | 2 cut(s) | 40, 896 |
| Hpy166II | GTNNAC | 8 cut(s) | 6, 268, 346, 529, 560, 643, 763, 1059 |
| Hpy188I | TCNGA | 5 cut(s) | 100, 243, 495, 837, 941 |
| Hpy188III | TCNNGA | 4 cut(s) | 45, 47, 722, 878 |
| Hpy8I | GTNNAC | 8 cut(s) | 6, 268, 346, 529, 560, 643, 763, 1059 |
| Hpy99I | CGWCG | 4 cut(s) | 87, 446, 902, 1041 |
| HpyAV | CCTTC | 2 cut(s) | 189, 472 |
| HpyCH4III | ACNGT | 2 cut(s) | 592, 751 |
| HpyCH4IV | ACGT | 1 cut(s) | 613 |
| HpyCH4V | TGCA | 6 cut(s) | 119, 435, 524, 692, 743, 924 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1049 |
| HpyF3I | CTNAG | 3 cut(s) | 242, 248, 836 |
| HpySE526I | ACGT | 1 cut(s) | 613 |
| Hsp92I | GRCGYC | 1 cut(s) | 613 |
| Hsp92II | CATG | 8 cut(s) | 198, 343, 353, 409, 435, 513, 579, 725 |
| Ksp22I | TGATCA | 1 cut(s) | 336 |
| Kzo9I | GATC | 6 cut(s) | 128, 229, 317, 336, 886, 1021 |
| LmnI | GCTCC | 2 cut(s) | 496, 1048 |
| Lsp1109I | GCAGC | 2 cut(s) | 131, 508 |
| LweI | GCATC | 5 cut(s) | 444, 701, 752, 933, 1005 |
| MaeI | CTAG | 4 cut(s) | 137, 360, 564, 906 |
| MaeII | ACGT | 1 cut(s) | 613 |
| MaeIII | GTNAC | 2 cut(s) | 28, 566 |
| MalI | GATC | 6 cut(s) | 130, 231, 319, 338, 888, 1023 |
| MboI | GATC | 6 cut(s) | 128, 229, 317, 336, 886, 1021 |
| MboII | GAAGA | 8 cut(s) | 71, 167, 236, 239, 310, 477, 881, 961 |
| MfeI | CAATTG | 1 cut(s) | 156 |
| MhlI | GDGCHC | 1 cut(s) | 1045 |
| MluCI | AATT | 4 cut(s) | 18, 37, 156, 647 |
| MlyI | GAGTC | 5 cut(s) | 81, 253, 289, 411, 648 |
| MmeI | TCCRAC | 3 cut(s) | 295, 518, 949 |
| Mph1103I | ATGCAT | 1 cut(s) | 437 |
| MseI | TTAA | 1 cut(s) | 650 |
| MslI | CAYNNNNRTG | 1 cut(s) | 540 |
| MspI | CCGG | 3 cut(s) | 56, 109, 1049 |
| MspR9I | CCNGG | 2 cut(s) | 56, 305 |
| MunI | CAATTG | 1 cut(s) | 156 |
| MvaI | CCWGG | 1 cut(s) | 305 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1049 |
| NciI | CCSGG | 1 cut(s) | 56 |
| NcoI | CCATGG | 1 cut(s) | 349 |
| NdeII | GATC | 6 cut(s) | 128, 229, 317, 336, 886, 1021 |
| NheI | GCTAGC | 1 cut(s) | 136 |
| NlaIII | CATG | 8 cut(s) | 198, 343, 353, 409, 435, 513, 579, 725 |
| NlaIV | GGNNCC | 2 cut(s) | 217, 581 |
| NmeAIII | GCCGAG | 1 cut(s) | 244 |
| NmuCI | GTSAC | 2 cut(s) | 28, 566 |
| NsiI | ATGCAT | 1 cut(s) | 437 |
| PaeR7I | CTCGAG | 1 cut(s) | 45 |
| PagI | TCATGA | 1 cut(s) | 721 |
| PfeI | GAWTC | 3 cut(s) | 76, 382, 686 |
| PfoI | TCCNGGA | 1 cut(s) | 54 |
| PkrI | GCNGC | 2 cut(s) | 121, 523 |
| PleI | GAGTC | 5 cut(s) | 81, 252, 288, 410, 647 |
| PpsI | GAGTC | 5 cut(s) | 81, 252, 288, 410, 647 |
| Psp124BI | GAGCTC | 1 cut(s) | 1045 |
| Psp6I | CCWGG | 1 cut(s) | 303 |
| PspFI | CCCAGC | 1 cut(s) | 1031 |
| PspGI | CCWGG | 1 cut(s) | 303 |
| PspN4I | GGNNCC | 2 cut(s) | 217, 581 |
| PspPI | GGNCC | 1 cut(s) | 579 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 662, 694 |
| PstI | CTGCAG | 1 cut(s) | 526 |
| RsaI | GTAC | 2 cut(s) | 358, 764 |
| RsaNI | GTAC | 2 cut(s) | 357, 763 |
| RseI | CAYNNNNRTG | 1 cut(s) | 540 |
| SacI | GAGCTC | 1 cut(s) | 1045 |
| SalI | GTCGAC | 1 cut(s) | 344 |
| SaqAI | TTAA | 1 cut(s) | 650 |
| SatI | GCNGC | 2 cut(s) | 120, 522 |
| Sau3AI | GATC | 6 cut(s) | 128, 229, 317, 336, 886, 1021 |
| Sau96I | GGNCC | 1 cut(s) | 579 |
| SchI | GAGTC | 5 cut(s) | 81, 253, 289, 411, 648 |
| ScrFI | CCNGG | 2 cut(s) | 56, 305 |
| SduI | GDGCHC | 1 cut(s) | 1045 |
| SfaNI | GCATC | 5 cut(s) | 444, 701, 752, 933, 1005 |
| SfcI | CTRYAG | 2 cut(s) | 522, 556 |
| Sfr274I | CTCGAG | 1 cut(s) | 45 |
| SinI | GGWCC | 1 cut(s) | 579 |
| SlaI | CTCGAG | 1 cut(s) | 45 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 540 |
| SmlI | CTYRAG | 1 cut(s) | 45 |
| SmoI | CTYRAG | 1 cut(s) | 45 |
| SpeI | ACTAGT | 1 cut(s) | 359 |
| Sse9I | AATT | 4 cut(s) | 18, 37, 156, 647 |
| SsiI | CCGC | 1 cut(s) | 285 |
| SspI | AATATT | 1 cut(s) | 275 |
| SspMI | CTAG | 4 cut(s) | 137, 360, 564, 906 |
| SstI | GAGCTC | 1 cut(s) | 1045 |
| StyD4I | CCNGG | 2 cut(s) | 54, 303 |
| StyI | CCWWGG | 1 cut(s) | 349 |
| TaaI | ACNGT | 2 cut(s) | 592, 751 |
| TaiI | ACGT | 1 cut(s) | 616 |
| TaqI | TCGA | 9 cut(s) | 10, 46, 127, 278, 345, 757, 793, 810, 947 |
| TasI | AATT | 4 cut(s) | 18, 37, 156, 647 |
| TatI | WGTACW | 1 cut(s) | 762 |
| TfiI | GAWTC | 3 cut(s) | 76, 382, 686 |
| Tru1I | TTAA | 1 cut(s) | 650 |
| Tru9I | TTAA | 1 cut(s) | 650 |
| TseFI | GTSAC | 2 cut(s) | 28, 566 |
| TseI | GCWGC | 2 cut(s) | 119, 521 |
| Tsp45I | GTSAC | 2 cut(s) | 28, 566 |
| TspDTI | ATGAA | 3 cut(s) | 311, 710, 847 |
| VpaK11BI | GGWCC | 1 cut(s) | 579 |
| XhoI | CTCGAG | 1 cut(s) | 45 |
| XmiI | GTMKAC | 3 cut(s) | 345, 559, 642 |
| XspI | CTAG | 4 cut(s) | 137, 360, 564, 906 |
| ZraI | GACGTC | 1 cut(s) | 614 |
| Zsp2I | ATGCAT | 1 cut(s) | 437 |