Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023710.1

Orthogroup ID

OG0000142

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 781

Gene Structure 781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023710.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 781 bp

gaggtggtcgaaagaacttccagaacatatcttgcaattgataccacaaaggctatgcatatcagattaccaagtgtttcgtcaagtatgccctaattggcgagccgcggttgatataggcatcgccaccaagactccttgccttcccgctccagaactcccatggcttttgctcaggaggtattatgattgtcttcatgctttctccatcaaaaaccaattctcctgtgtaagagatcccaaattcttcccatcaattaatattgccaattatcctcctgatcccccaaatctagaagatgagtcatatactggcccggtgtggaacccttctgcttccctaacctgtcttgggtcaattggttcctggctgatcgtagctgctcatcaacaatgtcagaatgacaacagtaccactgtcgtcaacttcttcttgaatccggtatctcgtgcccgagtgatgctcccatcgcagtctacccttcaagaaaattgctccttcagcggcaatacaaccttgctctacaagaaaattgtagcctcttcaccgccaacgttaacgacagggctacagaaggaggattgtcttgtggctggtattgtttccccaggtattttggctttttgtaggccgaatgatacatcatggaccctcattgggaacattttagataagcccagatttatagatatatttctatttgatggaaaactatatgctataactatagtcggaaaccacaggtttctaatggtatttgaccactttgacatcggctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010468 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030684 GO:0030686 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070545 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904 GO:2000232

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT_2 Pescadillo_N

Protein Analysis

259

Amino Acids

29.12

Weight (kDa)

7.07

Isoelectric Point (pI)

48.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000142)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica	MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica	Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis	pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis	RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata	RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora	Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa	Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha	Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana	Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	150
AccI	GTMKAC	1 cut(s)	477
AccII	CGCG	1 cut(s)	108
AciI	CCGC	5 cut(s)	106, 108, 148, 505, 549
AclI	AACGTT	1 cut(s)	555
AclWI	GGATC	2 cut(s)	231, 276
AcsI	RAATTY	1 cut(s)	243
AcuI	CTGAAG	1 cut(s)	485
AfaI	GTAC	1 cut(s)	413
AfiI	CCNNNNNNNGG	2 cut(s)	352, 658
AgsI	TTSAA	2 cut(s)	437, 486
AjnI	CCWGG	2 cut(s)	366, 608
AluBI	AGCT	1 cut(s)	381
AluI	AGCT	1 cut(s)	381
AlwI	GGATC	2 cut(s)	231, 276
Ama87I	CYCGRG	1 cut(s)	454
AoxI	GGCC	2 cut(s)	314, 630
ApeKI	GCWGC	1 cut(s)	381
ApoI	RAATTY	1 cut(s)	243
AseI	ATTAAT	1 cut(s)	259
AspS9I	GGNCC	2 cut(s)	315, 649
AsuC2I	CCSGG	1 cut(s)	318
AsuHPI	GGTGA	1 cut(s)	538
AvaI	CYCGRG	1 cut(s)	454
AvaII	GGWCC	1 cut(s)	649
BaeGI	GKGCMC	1 cut(s)	455
BaeI	ACNNNNGTAYC	2 cut(s)	395, 428
BauI	CACGAG	1 cut(s)	448
BbsI	GAAGAC	1 cut(s)	186
BbvI	GCAGC	1 cut(s)	368
BccI	CCATC	4 cut(s)	216, 260, 476, 699
BciT130I	CCWGG	2 cut(s)	368, 610
BcnI	CCSGG	1 cut(s)	318
BfaI	CTAG	2 cut(s)	294, 779
BfmI	CTRYAG	2 cut(s)	570, 727
BisI	GCNGC	3 cut(s)	106, 382, 506
BlsI	GCNGC	3 cut(s)	107, 383, 507
Bme1390I	CCNGG	3 cut(s)	318, 368, 610
Bme18I	GGWCC	1 cut(s)	649
BmeT110I	CYCGRG	1 cut(s)	454
BmgT120I	GGNCC	2 cut(s)	315, 649
BmiI	GGNNCC	3 cut(s)	327, 365, 651
BmrFI	CCNGG	3 cut(s)	318, 368, 610
BmsI	GCATC	2 cut(s)	130, 451
BpiI	GAAGAC	1 cut(s)	186
BplI	GAGNNNNNCTC	2 cut(s)	448, 480
BpmI	CTGGAG	1 cut(s)	136
Bpu10I	CCTNAGC	1 cut(s)	174
BpuMI	CCSGG	1 cut(s)	318
BsaJI	CCNNGG	3 cut(s)	106, 162, 608
BsaWI	WCCGGW	1 cut(s)	440
BsaXI	ACNNNNNCTCC	4 cut(s)	119, 149, 207, 237
Bsc4I	CCNNNNNNNGG	2 cut(s)	352, 658
Bse1I	ACTGG	1 cut(s)	317
BseBI	CCWGG	2 cut(s)	368, 610
BseDI	CCNNGG	3 cut(s)	106, 162, 608
BseLI	CCNNNNNNNGG	2 cut(s)	352, 658
BseMII	CTCAG	1 cut(s)	188
BseNI	ACTGG	1 cut(s)	317
BseSI	GKGCMC	1 cut(s)	455
BseXI	GCAGC	1 cut(s)	368
Bsh1236I	CGCG	1 cut(s)	108
BshFI	GGCC	2 cut(s)	316, 632
BsiHKCI	CYCGRG	1 cut(s)	454
BsiSI	CCGG	2 cut(s)	318, 441
BslI	CCNNNNNNNGG	2 cut(s)	352, 658
BsnI	GGCC	2 cut(s)	316, 632
BsoBI	CYCGRG	1 cut(s)	454
Bsp1286I	GDGCHC	1 cut(s)	455
Bsp143I	GATC	3 cut(s)	236, 281, 373
Bsp19I	CCATGG	1 cut(s)	162
BspACI	CCGC	5 cut(s)	106, 108, 148, 505, 549
BspANI	GGCC	2 cut(s)	316, 632
BspCNI	CTCAG	1 cut(s)	187
BspFNI	CGCG	1 cut(s)	108
BspLI	GGNNCC	3 cut(s)	327, 365, 651
BspPI	GGATC	2 cut(s)	231, 276
BsrBI	CCGCTC	1 cut(s)	150
BsrI	ACTGG	1 cut(s)	317
BssECI	CCNNGG	3 cut(s)	106, 162, 608
BssMI	GATC	3 cut(s)	236, 281, 373
BssSI	CACGAG	1 cut(s)	448
BssT1I	CCWWGG	1 cut(s)	162
Bst2BI	CACGAG	1 cut(s)	448
Bst2UI	CCWGG	2 cut(s)	368, 610
Bst4CI	ACNGT	2 cut(s)	411, 419
Bst6I	CTCTTC	1 cut(s)	548
BstC8I	GCNNGC	1 cut(s)	103
BstDEI	CTNAG	1 cut(s)	174
BstDSI	CCRYGG	2 cut(s)	106, 162
BstFNI	CGCG	1 cut(s)	108
BstKTI	GATC	3 cut(s)	239, 284, 376
BstMBI	GATC	3 cut(s)	236, 281, 373
BstMWI	GCNNNNNNNGC	2 cut(s)	470, 502
BstNI	CCWGG	2 cut(s)	368, 610
BstSCI	CCNGG	3 cut(s)	316, 366, 608
BstSFI	CTRYAG	2 cut(s)	570, 727
BstSLI	GKGCMC	1 cut(s)	455
BstUI	CGCG	1 cut(s)	108
BstV1I	GCAGC	1 cut(s)	368
BstV2I	GAAGAC	1 cut(s)	186
BstX2I	RGATCY	1 cut(s)	236
BstYI	RGATCY	1 cut(s)	236
BsuRI	GGCC	2 cut(s)	316, 632
BtgI	CCRYGG	2 cut(s)	106, 162
BtgZI	GCGATG	2 cut(s)	107, 454
BtsIMutI	CAGTG	1 cut(s)	415
Cac8I	GCNNGC	1 cut(s)	103
Cfr13I	GGNCC	2 cut(s)	315, 649
Cfr42I	CCGCGG	1 cut(s)	109
Csp6I	GTAC	1 cut(s)	412
CviAII	CATG	3 cut(s)	163, 198, 646
CviQI	GTAC	1 cut(s)	412
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	3 cut(s)	238, 283, 375
DpnII	GATC	3 cut(s)	236, 281, 373
Eam1104I	CTCTTC	1 cut(s)	548
EarI	CTCTTC	1 cut(s)	548
Eco130I	CCWWGG	1 cut(s)	162
Eco47I	GGWCC	1 cut(s)	649
Eco57I	CTGAAG	1 cut(s)	485
Eco88I	CYCGRG	1 cut(s)	454
EcoRII	CCWGG	2 cut(s)	366, 608
EcoT14I	CCWWGG	1 cut(s)	162
EcoT22I	ATGCAT	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	162
FaeI	CATG	3 cut(s)	166, 201, 649
FatI	CATG	3 cut(s)	162, 197, 645
FauI	CCCGC	1 cut(s)	155
FblI	GTMKAC	1 cut(s)	477
Fnu4HI	GCNGC	3 cut(s)	106, 382, 506
Fsp4HI	GCNGC	3 cut(s)	106, 382, 506
FspBI	CTAG	2 cut(s)	294, 779
GluI	GCNGC	3 cut(s)	106, 382, 506
GsuI	CTGGAG	1 cut(s)	136
HaeIII	GGCC	2 cut(s)	316, 632
HapII	CCGG	2 cut(s)	318, 441
Hin1II	CATG	3 cut(s)	166, 201, 649
HincII	GTYRAC	2 cut(s)	425, 559
HindII	GTYRAC	2 cut(s)	425, 559
HinfI	GANTC	3 cut(s)	134, 303, 437
HpaI	GTTAAC	1 cut(s)	559
HpaII	CCGG	2 cut(s)	318, 441
HphI	GGTGA	1 cut(s)	538
Hpy166II	GTNNAC	3 cut(s)	425, 478, 559
Hpy188I	TCNGA	3 cut(s)	65, 400, 735
Hpy188III	TCNNGA	7 cut(s)	21, 153, 176, 279, 294, 434, 486
Hpy8I	GTNNAC	3 cut(s)	425, 478, 559
HpyAV	CCTTC	5 cut(s)	153, 340, 492, 509, 569
HpyCH4III	ACNGT	2 cut(s)	411, 419
HpyCH4IV	ACGT	1 cut(s)	555
HpyCH4V	TGCA	2 cut(s)	35, 58
HpyF10VI	GCNNNNNNNGC	2 cut(s)	470, 502
HpyF3I	CTNAG	1 cut(s)	174
HpySE526I	ACGT	1 cut(s)	555
Hsp92II	CATG	3 cut(s)	166, 201, 649
KspAI	GTTAAC	1 cut(s)	559
KspI	CCGCGG	1 cut(s)	109
Kzo9I	GATC	3 cut(s)	236, 281, 373
LmnI	GCTCC	3 cut(s)	155, 469, 501
Lsp1109I	GCAGC	1 cut(s)	368
LweI	GCATC	2 cut(s)	130, 451
MaeI	CTAG	2 cut(s)	294, 779
MaeII	ACGT	1 cut(s)	555
MalI	GATC	3 cut(s)	238, 283, 375
MbiI	CCGCTC	1 cut(s)	150
MboI	GATC	3 cut(s)	236, 281, 373
MboII	GAAGA	5 cut(s)	186, 239, 309, 422, 535
MfeI	CAATTG	2 cut(s)	36, 358
MflI	RGATCY	1 cut(s)	236
MhlI	GDGCHC	1 cut(s)	455
MluCI	AATT	9 cut(s)	36, 95, 219, 243, 256, 269, 358, 491, 532
MlyI	GAGTC	2 cut(s)	128, 312
MmeI	TCCRAC	1 cut(s)	713
MnlI	CCTC	5 cut(s)	172, 286, 551, 572, 663
Mph1103I	ATGCAT	1 cut(s)	60
MseI	TTAA	2 cut(s)	259, 558
MspA1I	CMGCKG	2 cut(s)	108, 505
MspI	CCGG	2 cut(s)	318, 441
MspR9I	CCNGG	3 cut(s)	318, 368, 610
MunI	CAATTG	2 cut(s)	36, 358
MvaI	CCWGG	2 cut(s)	368, 610
MvnI	CGCG	1 cut(s)	108
MwoI	GCNNNNNNNGC	2 cut(s)	470, 502
NciI	CCSGG	1 cut(s)	318
NcoI	CCATGG	1 cut(s)	162
NdeII	GATC	3 cut(s)	236, 281, 373
NlaIII	CATG	3 cut(s)	166, 201, 649
NlaIV	GGNNCC	3 cut(s)	327, 365, 651
NsiI	ATGCAT	1 cut(s)	60
PfeI	GAWTC	1 cut(s)	437
PkrI	GCNGC	3 cut(s)	107, 383, 507
PleI	GAGTC	2 cut(s)	128, 311
PpsI	GAGTC	2 cut(s)	128, 311
PshBI	ATTAAT	1 cut(s)	259
Psp1406I	AACGTT	1 cut(s)	555
Psp6I	CCWGG	2 cut(s)	366, 608
PspGI	CCWGG	2 cut(s)	366, 608
PspN4I	GGNNCC	3 cut(s)	327, 365, 651
PspPI	GGNCC	2 cut(s)	315, 649
PsuI	RGATCY	1 cut(s)	236
RsaI	GTAC	1 cut(s)	413
RsaNI	GTAC	1 cut(s)	412
SacII	CCGCGG	1 cut(s)	109
SaqAI	TTAA	2 cut(s)	259, 558
SatI	GCNGC	3 cut(s)	106, 382, 506
Sau3AI	GATC	3 cut(s)	236, 281, 373
Sau96I	GGNCC	2 cut(s)	315, 649
SchI	GAGTC	2 cut(s)	128, 312
ScrFI	CCNGG	3 cut(s)	318, 368, 610
SduI	GDGCHC	1 cut(s)	455
SetI	ASST	8 cut(s)	6, 183, 348, 383, 519, 558, 614, 747
SfaNI	GCATC	2 cut(s)	130, 451
SfcI	CTRYAG	2 cut(s)	570, 727
Sfr303I	CCGCGG	1 cut(s)	109
SgrBI	CCGCGG	1 cut(s)	109
SinI	GGWCC	1 cut(s)	649
Sse9I	AATT	9 cut(s)	36, 95, 219, 243, 256, 269, 358, 491, 532
SsiI	CCGC	5 cut(s)	106, 108, 148, 505, 549
SspI	AATATT	1 cut(s)	263
SspMI	CTAG	2 cut(s)	294, 779
StyD4I	CCNGG	3 cut(s)	316, 366, 608
StyI	CCWWGG	1 cut(s)	162
TaaI	ACNGT	2 cut(s)	411, 419
TaiI	ACGT	1 cut(s)	558
TaqI	TCGA	1 cut(s)	9
TasI	AATT	9 cut(s)	36, 95, 219, 243, 256, 269, 358, 491, 532
TauI	GCSGC	2 cut(s)	108, 508
TfiI	GAWTC	1 cut(s)	437
Tru1I	TTAA	2 cut(s)	259, 558
Tru9I	TTAA	2 cut(s)	259, 558
TscAI	CASTG	1 cut(s)	422
TseI	GCWGC	1 cut(s)	381
TspDTI	ATGAA	1 cut(s)	186
TspRI	CASTG	1 cut(s)	422
VpaK11BI	GGWCC	1 cut(s)	649
VspI	ATTAAT	1 cut(s)	259
XapI	RAATTY	1 cut(s)	243
XbaI	TCTAGA	1 cut(s)	293
XcmI	CCANNNNNNNNNTGG	1 cut(s)	160
XmiI	GTMKAC	1 cut(s)	477
XspI	CTAG	2 cut(s)	294, 779
Zsp2I	ATGCAT	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.