Rh2BG509900

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
71692791 .. 71693414
624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG509900.1

Sequence Viewer

Length: 624 bp
ATGAAGATCCTCAATATAAGAATCCTATCAAGAATGTTGTTATGGTGTCTTGATTTTATTCGTTGCTGGCTCGAAACGATCGGGACTGTGCATGAGGACAGGTGGTCTAAGAAACTCCCAGATGATGTGATGCAATTGATTCTACCACGACGGCTCGTGTCAGATTATTTCAGTTGCCGTGACGTGTGCCGTTCTTGGCGAGCTGCAATTGACAGCAAGCGTTGCCTTCTTGCTAATCAACTCCCATGGCTTTTACTCAATTCCCATTACTCATTCTACATCAAAGATGACTACTTTGTGAGTGATCGGCAAATTTACGAATCAAACAAATGGCATACATGTATCCCTAACCCTAAGTGCCGCGTTGTATCAATTGAGCATTGGCACAGATGGCGCCCACGTTACTTGGGGAGTTGCGTTGGATCAATTGAGGGTTGGCTGATCATGGCTGCTAGTACACATTCATTTAGTTTTCGCTTTTTCCTCTTGAATCCGGTATCAGGAGCTCGAATTATGCTCCCACCAAATTCCACACTTGAGTGCTCCTACGAGACGAAAGCAGTAGCCTCTTCAGTACCAACAATAACAAGGTGGCAGCTGCCACGGCCGGGGTGTTATGTGTAA

Protein Analysis

207

Amino Acids

24.44

Weight (kDa)

9.27

Isoelectric Point (pI)

59.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 38 - 72 6.8e-06 F-box-like
Beta-prop_KIB1-4 PF03478 136 - 193 7.2e-08 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000142)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 393
AccII CGCG 1 cut(s) 363
AciI CCGC 1 cut(s) 361
AclWI GGATC 1 cut(s) 430
AcoI YGGCCR 1 cut(s) 605
AcsI RAATTY 2 cut(s) 312, 526
AcuI CTGAAG 1 cut(s) 555
AcyI GRCGYC 1 cut(s) 394
AfaI GTAC 2 cut(s) 457, 576
AfiI CCNNNNNNNGG 2 cut(s) 500, 608
AflIII ACRYGT 2 cut(s) 183, 338
AgsI TTSAA 1 cut(s) 490
AhdI GACNNNNNGTC 1 cut(s) 103
AjiI CACGTC 1 cut(s) 184
AleI CACNNNNGTG 1 cut(s) 538
AluBI AGCT 3 cut(s) 203, 506, 598
AluI AGCT 3 cut(s) 203, 506, 598
Alw21I GWGCWC 2 cut(s) 508, 545
Alw26I GTCTC 1 cut(s) 545
AlwI GGATC 1 cut(s) 430
AoxI GGCC 1 cut(s) 605
ApeKI GCWGC 4 cut(s) 203, 449, 595, 598
ApoI RAATTY 2 cut(s) 312, 526
AspLEI GCGC 1 cut(s) 396
AsuC2I CCSGG 1 cut(s) 609
BanI GGYRCC 1 cut(s) 393
BanII GRGCYC 1 cut(s) 508
BauI CACGAG 1 cut(s) 155
Bbv12I GWGCWC 2 cut(s) 508, 545
BbvI GCAGC 4 cut(s) 190, 436, 585, 607
BccI CCATC 1 cut(s) 384
BceAI ACGGC 4 cut(s) 162, 167, 174, 620
BciVI GTATCC 1 cut(s) 353
BclI TGATCA 1 cut(s) 441
BcnI CCSGG 1 cut(s) 609
BcoDI GTCTC 1 cut(s) 545
BfaI CTAG 1 cut(s) 453
BfoI RGCGCY 1 cut(s) 397
BfuI GTATCC 1 cut(s) 353
BisI GCNGC 5 cut(s) 204, 361, 450, 596, 599
BlsI GCNGC 5 cut(s) 205, 362, 451, 597, 600
Bme1390I CCNGG 1 cut(s) 609
BmeRI GACNNNNNGTC 1 cut(s) 103
BmgBI CACGTC 1 cut(s) 184
BmiI GGNNCC 1 cut(s) 395
BmrFI CCNGG 1 cut(s) 609
BmsI GCATC 1 cut(s) 120
BpuEI CTTGAG 1 cut(s) 557
BpuMI CCSGG 1 cut(s) 609
BsaHI GRCGYC 1 cut(s) 394
BsaJI CCNNGG 3 cut(s) 245, 602, 608
BsaWI WCCGGW 1 cut(s) 493
Bsc4I CCNNNNNNNGG 2 cut(s) 500, 608
BseDI CCNNGG 3 cut(s) 245, 602, 608
BseLI CCNNNNNNNGG 2 cut(s) 500, 608
BseX3I CGGCCG 1 cut(s) 605
BseXI GCAGC 4 cut(s) 190, 436, 585, 607
Bsh1236I CGCG 1 cut(s) 363
Bsh1285I CGRYCG 2 cut(s) 81, 608
BshFI GGCC 1 cut(s) 607
BshNI GGYRCC 1 cut(s) 393
BsiEI CGRYCG 2 cut(s) 81, 608
BsiHKAI GWGCWC 2 cut(s) 508, 545
BsiSI CCGG 2 cut(s) 494, 608
BslFI GGGAC 1 cut(s) 97
BslI CCNNNNNNNGG 2 cut(s) 500, 608
BsmAI GTCTC 1 cut(s) 545
BsmBI CGTCTC 1 cut(s) 545
BsmFI GGGAC 1 cut(s) 97
BsnI GGCC 1 cut(s) 607
Bsp1286I GDGCHC 2 cut(s) 508, 545
Bsp143I GATC 5 cut(s) 6, 78, 304, 422, 441
Bsp19I CCATGG 1 cut(s) 245
BspACI CCGC 1 cut(s) 361
BspANI GGCC 1 cut(s) 607
BspFNI CGCG 1 cut(s) 363
BspLI GGNNCC 1 cut(s) 395
BspPI GGATC 1 cut(s) 430
BspT107I GGYRCC 1 cut(s) 393
BssECI CCNNGG 3 cut(s) 245, 602, 608
BssMI GATC 5 cut(s) 6, 78, 304, 422, 441
BssNI GRCGYC 1 cut(s) 394
BssSI CACGAG 1 cut(s) 155
BssT1I CCWWGG 1 cut(s) 245
Bst2BI CACGAG 1 cut(s) 155
Bst4CI ACNGT 1 cut(s) 88
Bst6I CTCTTC 1 cut(s) 574
BstACI GRCGYC 1 cut(s) 394
BstAPI GCANNNNNTGC 1 cut(s) 222
BstC8I GCNNGC 3 cut(s) 68, 201, 218
BstDEI CTNAG 2 cut(s) 108, 354
BstDSI CCRYGG 2 cut(s) 245, 602
BstFNI CGCG 1 cut(s) 363
BstH2I RGCGCY 1 cut(s) 397
BstHHI GCGC 1 cut(s) 396
BstKTI GATC 5 cut(s) 9, 81, 307, 425, 444
BstMAI GTCTC 1 cut(s) 545
BstMBI GATC 5 cut(s) 6, 78, 304, 422, 441
BstMCI CGRYCG 2 cut(s) 81, 608
BstMWI GCNNNNNNNGC 3 cut(s) 222, 391, 604
BstNSI RCATGY 1 cut(s) 342
BstSCI CCNGG 1 cut(s) 607
BstUI CGCG 1 cut(s) 363
BstV1I GCAGC 4 cut(s) 190, 436, 585, 607
BstX2I RGATCY 1 cut(s) 6
BstYI RGATCY 1 cut(s) 6
BstZI CGGCCG 1 cut(s) 605
BsuI GTATCC 1 cut(s) 353
BsuRI GGCC 1 cut(s) 607
BtgI CCRYGG 2 cut(s) 245, 602
BtrI CACGTC 1 cut(s) 184
Cac8I GCNNGC 3 cut(s) 68, 201, 218
CfoI GCGC 1 cut(s) 396
Csp6I GTAC 2 cut(s) 456, 575
CspCI CAANNNNNGTGG 2 cut(s) 387, 422
CviAII CATG 4 cut(s) 92, 246, 339, 445
CviQI GTAC 2 cut(s) 456, 575
DdeI CTNAG 2 cut(s) 108, 354
DinI GGCGCC 1 cut(s) 395
DpnI GATC 5 cut(s) 8, 80, 306, 424, 443
DpnII GATC 5 cut(s) 6, 78, 304, 422, 441
DriI GACNNNNNGTC 1 cut(s) 103
EaeI YGGCCR 1 cut(s) 605
EagI CGGCCG 1 cut(s) 605
Eam1104I CTCTTC 1 cut(s) 574
Eam1105I GACNNNNNGTC 1 cut(s) 103
EarI CTCTTC 1 cut(s) 574
Ecl136II GAGCTC 1 cut(s) 506
EclXI CGGCCG 1 cut(s) 605
Eco130I CCWWGG 1 cut(s) 245
Eco24I GRGCYC 1 cut(s) 508
Eco52I CGGCCG 1 cut(s) 605
Eco53kI GAGCTC 1 cut(s) 506
Eco57I CTGAAG 1 cut(s) 555
EcoICRI GAGCTC 1 cut(s) 506
EcoT14I CCWWGG 1 cut(s) 245
EcoT38I GRGCYC 1 cut(s) 508
EgeI GGCGCC 1 cut(s) 395
EheI GGCGCC 1 cut(s) 395
ErhI CCWWGG 1 cut(s) 245
Esp3I CGTCTC 1 cut(s) 545
FaeI CATG 4 cut(s) 95, 249, 342, 448
FaiI YATR 9 cut(s) 17, 43, 93, 247, 336, 340, 446, 515, 618
FaqI GGGAC 1 cut(s) 97
FatI CATG 4 cut(s) 91, 245, 338, 444
FbaI TGATCA 1 cut(s) 441
Fnu4HI GCNGC 5 cut(s) 204, 361, 450, 596, 599
FriOI GRGCYC 1 cut(s) 508
Fsp4HI GCNGC 5 cut(s) 204, 361, 450, 596, 599
FspBI CTAG 1 cut(s) 453
GlaI GCGC 1 cut(s) 395
GluI GCNGC 5 cut(s) 204, 361, 450, 596, 599
HaeII RGCGCY 1 cut(s) 397
HaeIII GGCC 1 cut(s) 607
HapII CCGG 2 cut(s) 494, 608
HhaI GCGC 1 cut(s) 396
Hin1I GRCGYC 1 cut(s) 394
Hin1II CATG 4 cut(s) 95, 249, 342, 448
Hin6I GCGC 1 cut(s) 394
HinP1I GCGC 1 cut(s) 394
HinfI GANTC 4 cut(s) 21, 139, 320, 490
HpaII CCGG 2 cut(s) 494, 608
Hpy166II GTNNAC 1 cut(s) 458
Hpy188I TCNGA 1 cut(s) 163
Hpy188III TCNNGA 5 cut(s) 30, 50, 82, 487, 501
Hpy8I GTNNAC 1 cut(s) 458
Hpy99I CGWCG 1 cut(s) 153
HpyAV CCTTC 1 cut(s) 236
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4IV ACGT 2 cut(s) 183, 400
HpyCH4V TGCA 3 cut(s) 91, 133, 206
HpyF10VI GCNNNNNNNGC 3 cut(s) 222, 391, 604
HpyF3I CTNAG 2 cut(s) 108, 354
HpySE526I ACGT 2 cut(s) 183, 400
Hsp92I GRCGYC 1 cut(s) 394
Hsp92II CATG 4 cut(s) 95, 249, 342, 448
HspAI GCGC 1 cut(s) 394
KasI GGCGCC 1 cut(s) 393
Ksp22I TGATCA 1 cut(s) 441
Kzo9I GATC 5 cut(s) 6, 78, 304, 422, 441
LmnI GCTCC 3 cut(s) 503, 522, 548
LpnPI CCDG 5 cut(s) 52, 85, 132, 486, 507
Lsp1109I GCAGC 4 cut(s) 190, 436, 585, 607
LweI GCATC 1 cut(s) 120
MaeI CTAG 1 cut(s) 453
MaeII ACGT 2 cut(s) 183, 400
MaeIII GTNAC 2 cut(s) 179, 401
MalI GATC 5 cut(s) 8, 80, 306, 424, 443
MboI GATC 5 cut(s) 6, 78, 304, 422, 441
MboII GAAGA 2 cut(s) 16, 561
MfeI CAATTG 4 cut(s) 134, 207, 372, 426
MflI RGATCY 1 cut(s) 6
MhlI GDGCHC 2 cut(s) 508, 545
MluCI AATT 8 cut(s) 134, 207, 259, 312, 372, 426, 510, 526
Mly113I GGCGCC 1 cut(s) 394
MmeI TCCRAC 1 cut(s) 400
MnlI CCTC 5 cut(s) 20, 88, 424, 494, 577
MslI CAYNNNNRTG 1 cut(s) 538
MspA1I CMGCKG 1 cut(s) 598
MspI CCGG 2 cut(s) 494, 608
MspR9I CCNGG 1 cut(s) 609
MunI CAATTG 4 cut(s) 134, 207, 372, 426
MvnI CGCG 1 cut(s) 363
MwoI GCNNNNNNNGC 3 cut(s) 222, 391, 604
NarI GGCGCC 1 cut(s) 394
NciI CCSGG 1 cut(s) 609
NcoI CCATGG 1 cut(s) 245
NdeII GATC 5 cut(s) 6, 78, 304, 422, 441
NlaIII CATG 4 cut(s) 95, 249, 342, 448
NlaIV GGNNCC 1 cut(s) 395
NmuCI GTSAC 1 cut(s) 179
NspI RCATGY 1 cut(s) 342
OliI CACNNNNGTG 1 cut(s) 538
PciI ACATGT 1 cut(s) 338
PfeI GAWTC 4 cut(s) 21, 139, 320, 490
PkrI GCNGC 5 cut(s) 205, 362, 451, 597, 600
Ple19I CGATCG 1 cut(s) 81
PluTI GGCGCC 1 cut(s) 397
PscI ACATGT 1 cut(s) 338
Psp124BI GAGCTC 1 cut(s) 508
PspN4I GGNNCC 1 cut(s) 395
PsuI RGATCY 1 cut(s) 6
PvuI CGATCG 1 cut(s) 81
PvuII CAGCTG 1 cut(s) 598
RsaI GTAC 2 cut(s) 457, 576
RsaNI GTAC 2 cut(s) 456, 575
RseI CAYNNNNRTG 1 cut(s) 538
SacI GAGCTC 1 cut(s) 508
SatI GCNGC 5 cut(s) 204, 361, 450, 596, 599
Sau3AI GATC 5 cut(s) 6, 78, 304, 422, 441
ScrFI CCNGG 1 cut(s) 609
SduI GDGCHC 2 cut(s) 508, 545
SetI ASST 7 cut(s) 104, 186, 205, 403, 508, 593, 600
SfaNI GCATC 1 cut(s) 120
SfoI GGCGCC 1 cut(s) 395
SmiMI CAYNNNNRTG 1 cut(s) 538
SmlI CTYRAG 1 cut(s) 536
SmoI CTYRAG 1 cut(s) 536
Sse9I AATT 8 cut(s) 134, 207, 259, 312, 372, 426, 510, 526
SsiI CCGC 1 cut(s) 361
SspDI GGCGCC 1 cut(s) 393
SspMI CTAG 1 cut(s) 453
SstI GAGCTC 1 cut(s) 508
StyD4I CCNGG 1 cut(s) 607
StyI CCWWGG 1 cut(s) 245
TaaI ACNGT 1 cut(s) 88
TaiI ACGT 2 cut(s) 186, 403
TaqI TCGA 2 cut(s) 72, 508
TasI AATT 8 cut(s) 134, 207, 259, 312, 372, 426, 510, 526
TatI WGTACW 1 cut(s) 455
TauI GCSGC 1 cut(s) 363
TfiI GAWTC 4 cut(s) 21, 139, 320, 490
TseFI GTSAC 1 cut(s) 179
TseI GCWGC 4 cut(s) 203, 449, 595, 598
Tsp45I GTSAC 1 cut(s) 179
TspDTI ATGAA 2 cut(s) 17, 453
XapI RAATTY 2 cut(s) 312, 526
XceI RCATGY 1 cut(s) 342
XspI CTAG 1 cut(s) 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.