Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0000142

Physical Location & Seq

Genomic Coordinates Forward (+)

12344063 .. 12344359

Gene Structure 297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG145800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGCTAAAGGTTATCCTATTATCAACTTCTTCTTGAACCCAGTTTCTGGTGCTAGAGTCATGCTCCCATCCCTTCCAGACTACCACAGCTTCAACTTTCCAACCTACCTAGCAAAAGATTCTGCATCCAAGGAGTTGTTTATGATTTTTCATAAGATGTCTGATCCTGTTATTGCTCCAGAGGCTAATCCAGGCACTGCAGGATTTCGAGTTTTCAAGCTAGTGCCTAAGAGTAATGGTCCATGGTGGCCAGCGGAGCTTGTAGACCTTGGTGATCGGATATTGTTTCTCAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010468 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030684 GO:0030686 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070545 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904 GO:2000232

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT_2 Pescadillo_N

Protein Analysis

98

Amino Acids

10.94

Weight (kDa)

8.05

Isoelectric Point (pI)

32.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000142)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica	MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica	Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis	pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis	RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata	RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora	Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa	Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha	Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana	Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	47
AccI	GTMKAC	1 cut(s)	264
AciI	CCGC	1 cut(s)	254
AclWI	GGATC	1 cut(s)	158
AcoI	YGGCCR	1 cut(s)	248
AfiI	CCNNNNNNNGG	1 cut(s)	47
AgsI	TTSAA	3 cut(s)	37, 94, 217
AjnI	CCWGG	1 cut(s)	190
AluBI	AGCT	4 cut(s)	90, 220, 259, 294
AluI	AGCT	4 cut(s)	90, 220, 259, 294
AlwI	GGATC	1 cut(s)	158
AlwNI	CAGNNNCTG	2 cut(s)	47, 197
AoxI	GGCC	1 cut(s)	248
AspS9I	GGNCC	1 cut(s)	239
AsuHPI	GGTGA	1 cut(s)	284
AvaII	GGWCC	1 cut(s)	239
BalI	TGGCCA	1 cut(s)	250
BccI	CCATC	1 cut(s)	76
BciT130I	CCWGG	1 cut(s)	192
BfaI	CTAG	3 cut(s)	54, 110, 221
BfmI	CTRYAG	1 cut(s)	198
Bme1390I	CCNGG	1 cut(s)	192
Bme18I	GGWCC	1 cut(s)	239
BmgT120I	GGNCC	1 cut(s)	239
BmrFI	CCNGG	1 cut(s)	192
BmrI	ACTGGG	1 cut(s)	35
BmsI	GCATC	1 cut(s)	134
BmuI	ACTGGG	1 cut(s)	35
BplI	GAGNNNNNCTC	2 cut(s)	48, 80
BpmI	CTGGAG	1 cut(s)	162
BsaJI	CCNNGG	3 cut(s)	129, 242, 268
Bsc4I	CCNNNNNNNGG	1 cut(s)	47
Bse1I	ACTGG	1 cut(s)	41
BseBI	CCWGG	1 cut(s)	192
BseDI	CCNNGG	3 cut(s)	129, 242, 268
BseGI	GGATG	2 cut(s)	68, 125
BseLI	CCNNNNNNNGG	1 cut(s)	47
BseNI	ACTGG	1 cut(s)	41
BshFI	GGCC	1 cut(s)	250
BslI	CCNNNNNNNGG	1 cut(s)	47
BsnI	GGCC	1 cut(s)	250
Bsp143I	GATC	2 cut(s)	163, 274
Bsp19I	CCATGG	1 cut(s)	242
BspACI	CCGC	1 cut(s)	254
BspANI	GGCC	1 cut(s)	250
BspMAI	CTGCAG	1 cut(s)	202
BspPI	GGATC	1 cut(s)	158
BsrI	ACTGG	1 cut(s)	41
BssECI	CCNNGG	3 cut(s)	129, 242, 268
BssMI	GATC	2 cut(s)	163, 274
BssT1I	CCWWGG	3 cut(s)	129, 242, 268
Bst2UI	CCWGG	1 cut(s)	192
BstC8I	GCNNGC	1 cut(s)	252
BstDEI	CTNAG	2 cut(s)	228, 290
BstDSI	CCRYGG	1 cut(s)	242
BstF5I	GGATG	2 cut(s)	68, 125
BstKTI	GATC	2 cut(s)	166, 277
BstMBI	GATC	2 cut(s)	163, 274
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 256
BstNI	CCWGG	1 cut(s)	192
BstSCI	CCNGG	1 cut(s)	190
BstSFI	CTRYAG	1 cut(s)	198
BsuRI	GGCC	1 cut(s)	250
BtgI	CCRYGG	1 cut(s)	242
BtsCI	GGATG	2 cut(s)	68, 125
BtsI	GCAGTG	1 cut(s)	195
BtsIMutI	CAGTG	1 cut(s)	195
Cac8I	GCNNGC	1 cut(s)	252
CaiI	CAGNNNCTG	2 cut(s)	47, 197
Cfr13I	GGNCC	1 cut(s)	239
CviAII	CATG	2 cut(s)	61, 243
CviJI	RGCY	7 cut(s)	5, 90, 185, 220, 250, 259, 294
CviKI_1	RGCY	7 cut(s)	5, 90, 185, 220, 250, 259, 294
DdeI	CTNAG	2 cut(s)	228, 290
DpnI	GATC	2 cut(s)	165, 276
DpnII	GATC	2 cut(s)	163, 274
EaeI	YGGCCR	1 cut(s)	248
Eco130I	CCWWGG	3 cut(s)	129, 242, 268
Eco47I	GGWCC	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	190
EcoT14I	CCWWGG	3 cut(s)	129, 242, 268
ErhI	CCWWGG	3 cut(s)	129, 242, 268
FaeI	CATG	2 cut(s)	64, 246
FaiI	YATR	4 cut(s)	62, 143, 153, 244
FatI	CATG	2 cut(s)	60, 242
FblI	GTMKAC	1 cut(s)	264
FokI	GGATG	2 cut(s)	55, 112
FspBI	CTAG	3 cut(s)	54, 110, 221
GsuI	CTGGAG	1 cut(s)	162
HaeIII	GGCC	1 cut(s)	250
Hin1II	CATG	2 cut(s)	64, 246
HinfI	GANTC	2 cut(s)	57, 119
HphI	GGTGA	1 cut(s)	284
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188I	TCNGA	2 cut(s)	163, 279
Hpy188III	TCNNGA	3 cut(s)	34, 77, 179
Hpy8I	GTNNAC	1 cut(s)	265
HpyAV	CCTTC	1 cut(s)	83
HpyCH4V	TGCA	2 cut(s)	125, 200
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 256
HpyF3I	CTNAG	2 cut(s)	228, 290
Hsp92II	CATG	2 cut(s)	64, 246
Kzo9I	GATC	2 cut(s)	163, 274
LmnI	GCTCC	3 cut(s)	69, 181, 256
LpnPI	CCDG	9 cut(s)	33, 54, 90, 177, 180, 186, 192, 204, 264
LweI	GCATC	1 cut(s)	134
MaeI	CTAG	3 cut(s)	54, 110, 221
MalI	GATC	2 cut(s)	165, 276
MboI	GATC	2 cut(s)	163, 274
MboII	GAAGA	1 cut(s)	22
MlsI	TGGCCA	1 cut(s)	250
MluNI	TGGCCA	1 cut(s)	250
MlyI	GAGTC	1 cut(s)	66
MmeI	TCCRAC	1 cut(s)	125
MnlI	CCTC	1 cut(s)	175
Mox20I	TGGCCA	1 cut(s)	250
MscI	TGGCCA	1 cut(s)	250
Msp20I	TGGCCA	1 cut(s)	250
MspA1I	CMGCKG	1 cut(s)	254
MspR9I	CCNGG	1 cut(s)	192
MvaI	CCWGG	1 cut(s)	192
MwoI	GCNNNNNNNGC	2 cut(s)	182, 256
NcoI	CCATGG	1 cut(s)	242
NdeII	GATC	2 cut(s)	163, 274
NlaIII	CATG	2 cut(s)	64, 246
PfeI	GAWTC	1 cut(s)	119
PflMI	CCANNNNNTGG	1 cut(s)	47
PleI	GAGTC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	65
Psp6I	CCWGG	1 cut(s)	190
PspGI	CCWGG	1 cut(s)	190
PspPI	GGNCC	1 cut(s)	239
PstI	CTGCAG	1 cut(s)	202
PstNI	CAGNNNCTG	2 cut(s)	47, 197
Sau3AI	GATC	2 cut(s)	163, 274
Sau96I	GGNCC	1 cut(s)	239
SchI	GAGTC	1 cut(s)	66
ScrFI	CCNGG	1 cut(s)	192
SetI	ASST	8 cut(s)	13, 92, 107, 111, 222, 261, 270, 296
SfaNI	GCATC	1 cut(s)	134
SfcI	CTRYAG	1 cut(s)	198
SinI	GGWCC	1 cut(s)	239
SsiI	CCGC	1 cut(s)	254
SspMI	CTAG	3 cut(s)	54, 110, 221
StyD4I	CCNGG	1 cut(s)	190
StyI	CCWWGG	3 cut(s)	129, 242, 268
TaqI	TCGA	1 cut(s)	208
TfiI	GAWTC	1 cut(s)	119
TscAI	CASTG	1 cut(s)	202
TspDTI	ATGAA	1 cut(s)	140
TspRI	CASTG	1 cut(s)	202
Van91I	CCANNNNNTGG	1 cut(s)	47
VpaK11BI	GGWCC	1 cut(s)	239
XmiI	GTMKAC	1 cut(s)	264
XspI	CTAG	3 cut(s)	54, 110, 221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.