Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 144, 147, 300 |
| AclWI | GGATC | 1 cut(s) | 246 |
| AcsI | RAATTY | 1 cut(s) | 364 |
| AfaI | GTAC | 2 cut(s) | 62, 275 |
| AgsI | TTSAA | 1 cut(s) | 178 |
| AluBI | AGCT | 2 cut(s) | 78, 311 |
| AluI | AGCT | 2 cut(s) | 78, 311 |
| Alw26I | GTCTC | 1 cut(s) | 124 |
| AlwI | GGATC | 1 cut(s) | 246 |
| AoxI | GGCC | 1 cut(s) | 219 |
| ApeKI | GCWGC | 1 cut(s) | 75 |
| ApoI | RAATTY | 1 cut(s) | 364 |
| AspS9I | GGNCC | 3 cut(s) | 17, 138, 302 |
| AsuHPI | GGTGA | 2 cut(s) | 161, 206 |
| AvaII | GGWCC | 3 cut(s) | 17, 138, 302 |
| BbvI | GCAGC | 1 cut(s) | 87 |
| BccI | CCATC | 2 cut(s) | 86, 146 |
| BceAI | ACGGC | 1 cut(s) | 313 |
| BcoDI | GTCTC | 1 cut(s) | 124 |
| BfaI | CTAG | 1 cut(s) | 315 |
| BisI | GCNGC | 2 cut(s) | 76, 145 |
| BlsI | GCNGC | 2 cut(s) | 77, 146 |
| Bme18I | GGWCC | 3 cut(s) | 17, 138, 302 |
| BmgT120I | GGNCC | 3 cut(s) | 17, 138, 302 |
| BmiI | GGNNCC | 1 cut(s) | 139 |
| BoxI | GACNNNNGTC | 1 cut(s) | 136 |
| BpuEI | CTTGAG | 1 cut(s) | 254 |
| BsaAI | YACGTR | 1 cut(s) | 273 |
| BsaWI | WCCGGW | 2 cut(s) | 191, 304 |
| BseXI | GCAGC | 1 cut(s) | 87 |
| Bsh1285I | CGRYCG | 1 cut(s) | 207 |
| BshFI | GGCC | 1 cut(s) | 221 |
| BsiEI | CGRYCG | 1 cut(s) | 207 |
| BsiSI | CCGG | 3 cut(s) | 141, 192, 305 |
| BsiWI | CGTACG | 2 cut(s) | 60, 273 |
| BslFI | GGGAC | 1 cut(s) | 258 |
| BsmAI | GTCTC | 1 cut(s) | 124 |
| BsmFI | GGGAC | 1 cut(s) | 258 |
| BsnI | GGCC | 1 cut(s) | 221 |
| Bsp143I | GATC | 2 cut(s) | 204, 238 |
| BspACI | CCGC | 3 cut(s) | 144, 147, 300 |
| BspANI | GGCC | 1 cut(s) | 221 |
| BspLI | GGNNCC | 1 cut(s) | 139 |
| BspPI | GGATC | 1 cut(s) | 246 |
| BssMI | GATC | 2 cut(s) | 204, 238 |
| Bst4CI | ACNGT | 1 cut(s) | 293 |
| BstBAI | YACGTR | 1 cut(s) | 273 |
| BstKTI | GATC | 2 cut(s) | 207, 241 |
| BstMAI | GTCTC | 1 cut(s) | 124 |
| BstMBI | GATC | 2 cut(s) | 204, 238 |
| BstMCI | CGRYCG | 1 cut(s) | 207 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 84 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 136 |
| BstV1I | GCAGC | 1 cut(s) | 87 |
| BsuRI | GGCC | 1 cut(s) | 221 |
| Cfr13I | GGNCC | 3 cut(s) | 17, 138, 302 |
| CpoI | CGGWCCG | 1 cut(s) | 302 |
| Csp6I | GTAC | 2 cut(s) | 61, 274 |
| CspI | CGGWCCG | 1 cut(s) | 302 |
| CviAII | CATG | 1 cut(s) | 44 |
| CviJI | RGCY | 5 cut(s) | 78, 181, 221, 231, 311 |
| CviKI_1 | RGCY | 5 cut(s) | 78, 181, 221, 231, 311 |
| CviQI | GTAC | 2 cut(s) | 61, 274 |
| DpnI | GATC | 2 cut(s) | 206, 240 |
| DpnII | GATC | 2 cut(s) | 204, 238 |
| EciI | GGCGGA | 1 cut(s) | 315 |
| Eco47I | GGWCC | 3 cut(s) | 17, 138, 302 |
| EcoO109I | RGGNCCY | 1 cut(s) | 17 |
| FaeI | CATG | 1 cut(s) | 47 |
| FaiI | YATR | 5 cut(s) | 45, 114, 168, 288, 356 |
| FaqI | GGGAC | 1 cut(s) | 258 |
| FatI | CATG | 1 cut(s) | 43 |
| Fnu4HI | GCNGC | 2 cut(s) | 76, 145 |
| Fsp4HI | GCNGC | 2 cut(s) | 76, 145 |
| FspBI | CTAG | 1 cut(s) | 315 |
| GluI | GCNGC | 2 cut(s) | 76, 145 |
| HaeIII | GGCC | 1 cut(s) | 221 |
| HapII | CCGG | 3 cut(s) | 141, 192, 305 |
| Hin1II | CATG | 1 cut(s) | 47 |
| HincII | GTYRAC | 1 cut(s) | 325 |
| HindII | GTYRAC | 1 cut(s) | 325 |
| HindIII | AAGCTT | 1 cut(s) | 309 |
| HinfI | GANTC | 2 cut(s) | 67, 318 |
| HpaII | CCGG | 3 cut(s) | 141, 192, 305 |
| HphI | GGTGA | 2 cut(s) | 161, 206 |
| Hpy166II | GTNNAC | 2 cut(s) | 255, 325 |
| Hpy188I | TCNGA | 1 cut(s) | 72 |
| Hpy188III | TCNNGA | 2 cut(s) | 315, 369 |
| Hpy8I | GTNNAC | 2 cut(s) | 255, 325 |
| Hpy99I | CGWCG | 1 cut(s) | 281 |
| HpyCH4III | ACNGT | 1 cut(s) | 293 |
| HpyCH4IV | ACGT | 2 cut(s) | 272, 276 |
| HpyCH4V | TGCA | 2 cut(s) | 4, 112 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 84 |
| HpySE526I | ACGT | 2 cut(s) | 272, 276 |
| Hsp92II | CATG | 1 cut(s) | 47 |
| Kzo9I | GATC | 2 cut(s) | 204, 238 |
| LpnPI | CCDG | 7 cut(s) | 24, 154, 203, 205, 227, 233, 318 |
| Lsp1109I | GCAGC | 1 cut(s) | 87 |
| MaeI | CTAG | 1 cut(s) | 315 |
| MaeII | ACGT | 2 cut(s) | 272, 276 |
| MaeIII | GTNAC | 2 cut(s) | 194, 293 |
| MalI | GATC | 2 cut(s) | 206, 240 |
| MboI | GATC | 2 cut(s) | 204, 238 |
| MluCI | AATT | 2 cut(s) | 223, 364 |
| MnlI | CCTC | 6 cut(s) | 8, 192, 199, 229, 268, 274 |
| MseI | TTAA | 1 cut(s) | 360 |
| MslI | CAYNNNNRTG | 1 cut(s) | 48 |
| MspI | CCGG | 3 cut(s) | 141, 192, 305 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 84 |
| NdeII | GATC | 2 cut(s) | 204, 238 |
| NlaIII | CATG | 1 cut(s) | 47 |
| NlaIV | GGNNCC | 1 cut(s) | 139 |
| NmuCI | GTSAC | 2 cut(s) | 194, 293 |
| PfeI | GAWTC | 2 cut(s) | 67, 318 |
| Pfl23II | CGTACG | 2 cut(s) | 60, 273 |
| PkrI | GCNGC | 2 cut(s) | 77, 146 |
| Ple19I | CGATCG | 1 cut(s) | 207 |
| Ppu21I | YACGTR | 1 cut(s) | 273 |
| PpuMI | RGGWCCY | 1 cut(s) | 17 |
| PshAI | GACNNNNGTC | 1 cut(s) | 136 |
| Psp5II | RGGWCCY | 1 cut(s) | 17 |
| PspLI | CGTACG | 2 cut(s) | 60, 273 |
| PspN4I | GGNNCC | 1 cut(s) | 139 |
| PspPI | GGNCC | 3 cut(s) | 17, 138, 302 |
| PspPPI | RGGWCCY | 1 cut(s) | 17 |
| PvuI | CGATCG | 1 cut(s) | 207 |
| RsaI | GTAC | 2 cut(s) | 62, 275 |
| RsaNI | GTAC | 2 cut(s) | 61, 274 |
| RseI | CAYNNNNRTG | 1 cut(s) | 48 |
| Rsr2I | CGGWCCG | 1 cut(s) | 302 |
| RsrII | CGGWCCG | 1 cut(s) | 302 |
| SaqAI | TTAA | 1 cut(s) | 360 |
| SatI | GCNGC | 2 cut(s) | 76, 145 |
| Sau3AI | GATC | 2 cut(s) | 204, 238 |
| Sau96I | GGNCC | 3 cut(s) | 17, 138, 302 |
| SetI | ASST | 8 cut(s) | 22, 80, 252, 260, 275, 279, 313, 333 |
| SinI | GGWCC | 3 cut(s) | 17, 138, 302 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 48 |
| SmlI | CTYRAG | 1 cut(s) | 233 |
| SmoI | CTYRAG | 1 cut(s) | 233 |
| Sse9I | AATT | 2 cut(s) | 223, 364 |
| SsiI | CCGC | 3 cut(s) | 144, 147, 300 |
| SspMI | CTAG | 1 cut(s) | 315 |
| TaaI | ACNGT | 1 cut(s) | 293 |
| TaiI | ACGT | 2 cut(s) | 275, 279 |
| TaqI | TCGA | 2 cut(s) | 203, 227 |
| TasI | AATT | 2 cut(s) | 223, 364 |
| TauI | GCSGC | 1 cut(s) | 147 |
| TfiI | GAWTC | 2 cut(s) | 67, 318 |
| Tru1I | TTAA | 1 cut(s) | 360 |
| Tru9I | TTAA | 1 cut(s) | 360 |
| TseFI | GTSAC | 2 cut(s) | 194, 293 |
| TseI | GCWGC | 1 cut(s) | 75 |
| Tsp45I | GTSAC | 2 cut(s) | 194, 293 |
| VpaK11BI | GGWCC | 3 cut(s) | 17, 138, 302 |
| XapI | RAATTY | 1 cut(s) | 364 |
| XbaI | TCTAGA | 1 cut(s) | 314 |
| XspI | CTAG | 1 cut(s) | 315 |