Rroxscaffold_2G00085100

F-Box protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
7488688 .. 7494294
5607 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00085100.1

Sequence Viewer

Length: 360 bp
ATGTCAAGTATGACTGAGACGATGGGGGAGAAGGAGAGGTGGTCGCAAGGACTCCCAGATGATATATTGCAATTGATAGCACAACGACTATACATATCAGATTACCTTGTGTTTCACCAAGTATGCCCTTTTTGGCGAGTCGCTGTGTATAGAGGTATTGCCACCAGATCGATCTTGCCCTCCTGCTCCTCAACTTCCATGGCTTTTGCTCCACGACTCAAGATGTTTGATTTAGCCATGGATAAACTCACCGATGCAGAAGCTGCTAGTCCTTCTTTGAGGATCTCTTCTCATATCTCAGTTTTTAATTACCAAATGTTTACTGTGCATATTGGCTTGAATTCAAGAATCATTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

119

Amino Acids

13.52

Weight (kDa)

6.82

Isoelectric Point (pI)

60.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000142)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 290
AcsI RAATTY 1 cut(s) 340
AgsI TTSAA 2 cut(s) 340, 345
AluBI AGCT 1 cut(s) 263
AluI AGCT 1 cut(s) 263
Alw26I GTCTC 1 cut(s) 11
AlwI GGATC 1 cut(s) 290
AlwNI CAGNNNCTG 1 cut(s) 263
ApeKI GCWGC 1 cut(s) 263
ApoI RAATTY 1 cut(s) 340
AsuHPI GGTGA 2 cut(s) 107, 241
BbvI GCAGC 1 cut(s) 250
BccI CCATC 1 cut(s) 16
BcoDI GTCTC 1 cut(s) 11
BfaI CTAG 1 cut(s) 267
BisI GCNGC 1 cut(s) 264
BlsI GCNGC 1 cut(s) 265
BmsI GCATC 1 cut(s) 244
BpuEI CTTGAG 1 cut(s) 203
Bsa29I ATCGAT 1 cut(s) 170
BsaJI CCNNGG 2 cut(s) 198, 237
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
BseCI ATCGAT 1 cut(s) 170
BseDI CCNNGG 2 cut(s) 198, 237
BseMII CTCAG 2 cut(s) 6, 312
BseRI GAGGAG 1 cut(s) 178
BseXI GCAGC 1 cut(s) 250
BshVI ATCGAT 1 cut(s) 170
BsmAI GTCTC 1 cut(s) 11
BsmBI CGTCTC 1 cut(s) 11
Bsp143I GATC 3 cut(s) 167, 171, 282
Bsp19I CCATGG 2 cut(s) 198, 237
BspCNI CTCAG 2 cut(s) 7, 311
BspDI ATCGAT 1 cut(s) 170
BspPI GGATC 1 cut(s) 290
BssECI CCNNGG 2 cut(s) 198, 237
BssMI GATC 3 cut(s) 167, 171, 282
BssT1I CCWWGG 2 cut(s) 198, 237
Bst4CI ACNGT 1 cut(s) 325
Bst6I CTCTTC 1 cut(s) 292
BstAPI GCANNNNNTGC 1 cut(s) 263
BstDEI CTNAG 2 cut(s) 15, 298
BstDSI CCRYGG 2 cut(s) 198, 237
BstKTI GATC 3 cut(s) 170, 174, 285
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 3 cut(s) 167, 171, 282
BstMWI GCNNNNNNNGC 1 cut(s) 263
BstV1I GCAGC 1 cut(s) 250
BstX2I RGATCY 1 cut(s) 282
BstYI RGATCY 1 cut(s) 282
Bsu15I ATCGAT 1 cut(s) 170
BsuTUI ATCGAT 1 cut(s) 170
BtgI CCRYGG 2 cut(s) 198, 237
CaiI CAGNNNCTG 1 cut(s) 263
ClaI ATCGAT 1 cut(s) 170
CviAII CATG 2 cut(s) 199, 238
CviJI RGCY 4 cut(s) 203, 236, 263, 336
CviKI_1 RGCY 4 cut(s) 203, 236, 263, 336
DdeI CTNAG 2 cut(s) 15, 298
DpnI GATC 3 cut(s) 169, 173, 284
DpnII GATC 3 cut(s) 167, 171, 282
Eam1104I CTCTTC 1 cut(s) 292
EarI CTCTTC 1 cut(s) 292
Eco130I CCWWGG 2 cut(s) 198, 237
EcoRI GAATTC 1 cut(s) 340
EcoT14I CCWWGG 2 cut(s) 198, 237
ErhI CCWWGG 2 cut(s) 198, 237
Esp3I CGTCTC 1 cut(s) 11
FaeI CATG 2 cut(s) 202, 241
FatI CATG 2 cut(s) 198, 237
Fnu4HI GCNGC 1 cut(s) 264
Fsp4HI GCNGC 1 cut(s) 264
FspBI CTAG 1 cut(s) 267
GluI GCNGC 1 cut(s) 264
Hin1II CATG 2 cut(s) 202, 241
HinfI GANTC 4 cut(s) 51, 138, 216, 348
HphI GGTGA 2 cut(s) 107, 241
Hpy166II GTNNAC 1 cut(s) 321
Hpy188I TCNGA 1 cut(s) 100
Hpy188III TCNNGA 2 cut(s) 220, 345
Hpy8I GTNNAC 1 cut(s) 321
HpyAV CCTTC 2 cut(s) 25, 282
HpyCH4III ACNGT 1 cut(s) 325
HpyCH4V TGCA 3 cut(s) 70, 257, 328
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
HpyF3I CTNAG 2 cut(s) 15, 298
Hsp92II CATG 2 cut(s) 202, 241
Kzo9I GATC 3 cut(s) 167, 171, 282
LmnI GCTCC 2 cut(s) 191, 214
LpnPI CCDG 3 cut(s) 69, 178, 196
Lsp1109I GCAGC 1 cut(s) 250
LweI GCATC 1 cut(s) 244
MaeI CTAG 1 cut(s) 267
MalI GATC 3 cut(s) 169, 173, 284
MboI GATC 3 cut(s) 167, 171, 282
MboII GAAGA 1 cut(s) 279
MfeI CAATTG 1 cut(s) 71
MflI RGATCY 1 cut(s) 282
MluCI AATT 3 cut(s) 71, 307, 340
MlyI GAGTC 3 cut(s) 45, 147, 210
MnlI CCTC 5 cut(s) 30, 146, 190, 199, 273
MseI TTAA 1 cut(s) 306
MunI CAATTG 1 cut(s) 71
MwoI GCNNNNNNNGC 1 cut(s) 263
NcoI CCATGG 2 cut(s) 198, 237
NdeII GATC 3 cut(s) 167, 171, 282
NlaIII CATG 2 cut(s) 202, 241
PfeI GAWTC 1 cut(s) 348
PkrI GCNGC 1 cut(s) 265
PleI GAGTC 3 cut(s) 45, 146, 210
PpsI GAGTC 3 cut(s) 45, 146, 210
PstNI CAGNNNCTG 1 cut(s) 263
PsuI RGATCY 1 cut(s) 282
SaqAI TTAA 1 cut(s) 306
SatI GCNGC 1 cut(s) 264
Sau3AI GATC 3 cut(s) 167, 171, 282
SchI GAGTC 3 cut(s) 45, 147, 210
SetI ASST 4 cut(s) 41, 108, 157, 265
SfaNI GCATC 1 cut(s) 244
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
Sse9I AATT 3 cut(s) 71, 307, 340
SspMI CTAG 1 cut(s) 267
StyI CCWWGG 2 cut(s) 198, 237
TaaI ACNGT 1 cut(s) 325
TaqI TCGA 1 cut(s) 170
TasI AATT 3 cut(s) 71, 307, 340
TfiI GAWTC 1 cut(s) 348
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TseI GCWGC 1 cut(s) 263
XapI RAATTY 1 cut(s) 340
XspI CTAG 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.