Rroxscaffold_3G00259780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000142
Physical Location & Seq
Forward (+)
54184210 .. 54190686
6477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00259780.1

Sequence Viewer

Length: 390 bp
ATGCGCGTAGCTTCCTCCGTGAATTCGGATTGTACAATCCTAAAGGTTCAACAAGCAACGTCGAACAGAACTCCTTTCACTTTAACTCGTAATCAACACGTTCAAGCGAAGATTGCCTTTTGCTGTTCGCAGATGGAGAGAGTCGAAGATCTACTTTTCCACAAATCGAACGTTAAGGAACGAGAAAATGTCGACGAGTTAAGCTTGACAAGATCTTTCCGAGAAGGGATTCGCATTTCGTGGGGTGCGCCTCTGATTCTCTGCTGGCTCTTGAAGGATTCAATCTCTGTGACAATGAGTATCAGCAGCGTAGACGACAGATGGTCCAAGCATCTTCCTCGTGAATTAGTCGACATGATAGTGAAGCGGCTAGGACATGATAGTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.76

Weight (kDa)

8.82

Isoelectric Point (pI)

37.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000142)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 192, 312, 351
AccII CGCG 1 cut(s) 6
AciI CCGC 1 cut(s) 367
AclI AACGTT 1 cut(s) 171
AcsI RAATTY 1 cut(s) 22
AfaI GTAC 1 cut(s) 34
AflIII ACRYGT 1 cut(s) 97
AgsI TTSAA 4 cut(s) 50, 104, 274, 282
AhdI GACNNNNNGTC 1 cut(s) 322
AluBI AGCT 2 cut(s) 11, 204
AluI AGCT 2 cut(s) 11, 204
ApeKI GCWGC 1 cut(s) 306
ApoI RAATTY 1 cut(s) 22
Asp700I GAANNNNTTC 1 cut(s) 228
AspLEI GCGC 2 cut(s) 6, 250
AspS9I GGNCC 1 cut(s) 324
AvaII GGWCC 1 cut(s) 324
BauI CACGAG 1 cut(s) 339
BbvI GCAGC 1 cut(s) 318
BccI CCATC 2 cut(s) 127, 315
BcgI CGANNNNNNTGC 2 cut(s) 320, 354
BfaI CTAG 1 cut(s) 371
BglII AGATCT 2 cut(s) 148, 212
BisI GCNGC 2 cut(s) 307, 368
BlsI GCNGC 2 cut(s) 308, 369
Bme18I GGWCC 1 cut(s) 324
BmeRI GACNNNNNGTC 1 cut(s) 322
BmgT120I GGNCC 1 cut(s) 324
BmsI GCATC 1 cut(s) 340
BseXI GCAGC 1 cut(s) 318
Bsh1236I CGCG 1 cut(s) 6
Bsp1407I TGTACA 1 cut(s) 32
Bsp143I GATC 2 cut(s) 148, 212
BspACI CCGC 1 cut(s) 367
BspFNI CGCG 1 cut(s) 6
BsrGI TGTACA 1 cut(s) 32
BssMI GATC 2 cut(s) 148, 212
BssSI CACGAG 1 cut(s) 339
Bst2BI CACGAG 1 cut(s) 339
BstAUI TGTACA 1 cut(s) 32
BstC8I GCNNGC 1 cut(s) 266
BstFNI CGCG 1 cut(s) 6
BstHHI GCGC 2 cut(s) 6, 250
BstKTI GATC 2 cut(s) 151, 215
BstMBI GATC 2 cut(s) 148, 212
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstUI CGCG 1 cut(s) 6
BstV1I GCAGC 1 cut(s) 318
BstX2I RGATCY 2 cut(s) 148, 212
BstYI RGATCY 2 cut(s) 148, 212
Cac8I GCNNGC 1 cut(s) 266
CfoI GCGC 2 cut(s) 6, 250
Cfr13I GGNCC 1 cut(s) 324
Csp6I GTAC 1 cut(s) 33
CviAII CATG 3 cut(s) 355, 377, 387
CviJI RGCY 4 cut(s) 11, 204, 268, 370
CviKI_1 RGCY 4 cut(s) 11, 204, 268, 370
CviQI GTAC 1 cut(s) 33
DpnI GATC 2 cut(s) 150, 214
DpnII GATC 2 cut(s) 148, 212
DriI GACNNNNNGTC 1 cut(s) 322
Eam1105I GACNNNNNGTC 1 cut(s) 322
Eco47I GGWCC 1 cut(s) 324
EcoRI GAATTC 1 cut(s) 22
FaeI CATG 3 cut(s) 358, 380, 390
FaiI YATR 3 cut(s) 356, 378, 388
FalI AAGNNNNNCTT 4 cut(s) 101, 133, 138, 170
FatI CATG 3 cut(s) 354, 376, 386
FblI GTMKAC 3 cut(s) 192, 312, 351
Fnu4HI GCNGC 2 cut(s) 307, 368
Fsp4HI GCNGC 2 cut(s) 307, 368
FspBI CTAG 1 cut(s) 371
GlaI GCGC 2 cut(s) 5, 249
GluI GCNGC 2 cut(s) 307, 368
HhaI GCGC 2 cut(s) 6, 250
Hin1II CATG 3 cut(s) 358, 380, 390
Hin6I GCGC 2 cut(s) 4, 248
HinP1I GCGC 2 cut(s) 4, 248
HincII GTYRAC 2 cut(s) 193, 352
HindII GTYRAC 2 cut(s) 193, 352
HindIII AAGCTT 1 cut(s) 202
HinfI GANTC 4 cut(s) 141, 229, 256, 278
Hpy166II GTNNAC 3 cut(s) 193, 313, 352
Hpy188I TCNGA 3 cut(s) 28, 221, 255
Hpy188III TCNNGA 2 cut(s) 271, 341
Hpy8I GTNNAC 3 cut(s) 193, 313, 352
Hpy99I CGWCG 2 cut(s) 64, 197
HpyAV CCTTC 2 cut(s) 218, 268
HpyCH4IV ACGT 3 cut(s) 59, 99, 171
HpyCH4V TGCA 1 cut(s) 386
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpySE526I ACGT 3 cut(s) 59, 99, 171
Hsp92II CATG 3 cut(s) 358, 380, 390
HspAI GCGC 2 cut(s) 4, 248
Kzo9I GATC 2 cut(s) 148, 212
LpnPI CCDG 1 cut(s) 250
Lsp1109I GCAGC 1 cut(s) 318
LweI GCATC 1 cut(s) 340
MaeI CTAG 1 cut(s) 371
MaeII ACGT 3 cut(s) 59, 99, 171
MaeIII GTNAC 1 cut(s) 289
MalI GATC 2 cut(s) 150, 214
MboI GATC 2 cut(s) 148, 212
MboII GAAGA 3 cut(s) 121, 158, 326
MflI RGATCY 2 cut(s) 148, 212
MluCI AATT 2 cut(s) 22, 344
MlyI GAGTC 1 cut(s) 150
MnlI CCTC 3 cut(s) 25, 261, 348
MroXI GAANNNNTTC 1 cut(s) 228
MseI TTAA 3 cut(s) 83, 174, 200
MslI CAYNNNNRTG 2 cut(s) 359, 381
MvnI CGCG 1 cut(s) 6
MwoI GCNNNNNNNGC 1 cut(s) 113
NdeII GATC 2 cut(s) 148, 212
NlaIII CATG 3 cut(s) 358, 380, 390
NmuCI GTSAC 1 cut(s) 289
PdmI GAANNNNTTC 1 cut(s) 228
PfeI GAWTC 3 cut(s) 229, 256, 278
PkrI GCNGC 2 cut(s) 308, 369
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
Psp1406I AACGTT 1 cut(s) 171
PspPI GGNCC 1 cut(s) 324
PsuI RGATCY 2 cut(s) 148, 212
RsaI GTAC 1 cut(s) 34
RsaNI GTAC 1 cut(s) 33
RseI CAYNNNNRTG 2 cut(s) 359, 381
SalI GTCGAC 2 cut(s) 191, 350
SaqAI TTAA 3 cut(s) 83, 174, 200
SatI GCNGC 2 cut(s) 307, 368
Sau3AI GATC 2 cut(s) 148, 212
Sau96I GGNCC 1 cut(s) 324
SchI GAGTC 1 cut(s) 150
SetI ASST 6 cut(s) 13, 48, 62, 102, 174, 206
SfaNI GCATC 1 cut(s) 340
SinI GGWCC 1 cut(s) 324
SmiMI CAYNNNNRTG 2 cut(s) 359, 381
Sse9I AATT 2 cut(s) 22, 344
SsiI CCGC 1 cut(s) 367
SspMI CTAG 1 cut(s) 371
TaiI ACGT 3 cut(s) 62, 102, 174
TaqI TCGA 5 cut(s) 62, 144, 167, 192, 351
TasI AATT 2 cut(s) 22, 344
TatI WGTACW 1 cut(s) 32
TauI GCSGC 1 cut(s) 370
TfiI GAWTC 3 cut(s) 229, 256, 278
Tru1I TTAA 3 cut(s) 83, 174, 200
Tru9I TTAA 3 cut(s) 83, 174, 200
TseFI GTSAC 1 cut(s) 289
TseI GCWGC 1 cut(s) 306
Tsp45I GTSAC 1 cut(s) 289
TspGWI ACGGA 1 cut(s) 7
VpaK11BI GGWCC 1 cut(s) 324
XapI RAATTY 1 cut(s) 22
XmiI GTMKAC 3 cut(s) 192, 312, 351
XmnI GAANNNNTTC 1 cut(s) 228
XspI CTAG 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.