Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000142

Physical Location & Seq

Genomic Coordinates Reverse (-)

35820480 .. 35821486

Gene Structure 1007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g47161.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGTCAAAGGAGAGATGGTCGCAAGAACTCCCAGATGATATCTTGCAATTGATAGCACAACGACTATACATCTCCGATTACCAAGTGTTTCGCCAAGTATGCCCTAATTGGCGAGCCGCTGTTGATAGAGGTATTGCCACCCGATCTTGCCCTCCTGCTCCTCAACCCCCATGGCTTTTGCTCCTCGACTCCCCTGGAATTTGGTCAAGTCGAGTCCTGGGCTCCTGGCTGATCGTAGCTATTAGTCAAGGATCTACTCTCCTCAACTTCTTCTTCATTAATCCACTATCTCGTGCCCGATATGCTCTCGTCTATAAAGACCTTGAAATAATTGATCGGGCCAAATACAATTGCAGCATCAGCATAGGCATCCCGATCAACTGGAATGAGAGACCGAGTAGTGATGGCAAGCCATCCTGCGAGGAGGTTACTGACCTTGGTGATCGAATATTGTTTCTGAGCTTCAGAAGCAACAAGGTCATCAATGACAAGACACTTGGGAAAAACTGCATCTATTTTGCTTTCAGATTCATAGAAGGGTTTTGGGTGTATTCCTTGATGGATATGAGCTTCAAAAGGATTAACTTACCCAAGGATTACTCGTGTCAAAGAGGAGATACTTTGGTTCACACCACATCCGTGGTAGCTCGATTACTTTACAATAAGTTGAACAGATATATTTGCACCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009965 GO:0009966 GO:0009987 GO:0010016 GO:0010051 GO:0010305 GO:0010498 GO:0010646 GO:0010928 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0030163 GO:0031146 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048366 GO:0048367 GO:0048583 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051603 GO:0060776 GO:0065007 GO:0070647 GO:0071704 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

231

Amino Acids

26.55

Weight (kDa)

9.08

Isoelectric Point (pI)

46.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	9 - 43	3.8e-06	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000142)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica	MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica	Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis	pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis	RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata	RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora	Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa	Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha	Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana	Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	117
AclWI	GGATC	1 cut(s)	259
AcsI	RAATTY	1 cut(s)	198
AcuI	CTGAAG	1 cut(s)	448
AgsI	TTSAA	3 cut(s)	326, 574, 670
AjnI	CCWGG	3 cut(s)	193, 216, 224
AleI	CACNNNNGTG	1 cut(s)	638
AluBI	AGCT	4 cut(s)	239, 462, 570, 647
AluI	AGCT	4 cut(s)	239, 462, 570, 647
Alw26I	GTCTC	1 cut(s)	385
AlwI	GGATC	1 cut(s)	259
AoxI	GGCC	1 cut(s)	339
ApeKI	GCWGC	1 cut(s)	354
ApoI	RAATTY	1 cut(s)	198
AseI	ATTAAT	1 cut(s)	279
AspS9I	GGNCC	1 cut(s)	339
AsuHPI	GGTGA	1 cut(s)	452
BaeGI	GKGCMC	1 cut(s)	298
BaeI	ACNNNNGTAYC	2 cut(s)	609, 642
BanII	GRGCYC	1 cut(s)	224
BauI	CACGAG	2 cut(s)	291, 601
BbvI	GCAGC	1 cut(s)	366
BccI	CCATC	4 cut(s)	9, 398, 421, 553
BciT130I	CCWGG	3 cut(s)	195, 218, 226
BcoDI	GTCTC	1 cut(s)	385
BisI	GCNGC	2 cut(s)	117, 355
BlsI	GCNGC	2 cut(s)	118, 356
Bme1390I	CCNGG	3 cut(s)	195, 218, 226
BmgT120I	GGNCC	1 cut(s)	339
BmiI	GGNNCC	1 cut(s)	223
BmrFI	CCNGG	3 cut(s)	195, 218, 226
BmsI	GCATC	3 cut(s)	366, 378, 519
BsaI	GGTCTC	1 cut(s)	385
BsaJI	CCNNGG	6 cut(s)	170, 193, 217, 436, 591, 639
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bse1I	ACTGG	1 cut(s)	386
BseBI	CCWGG	3 cut(s)	195, 218, 226
BseDI	CCNNGG	6 cut(s)	170, 193, 217, 436, 591, 639
BseGI	GGATG	3 cut(s)	369, 413, 635
BseMII	CTCAG	1 cut(s)	449
BseNI	ACTGG	1 cut(s)	386
BseRI	GAGGAG	5 cut(s)	150, 173, 251, 437, 627
BseSI	GKGCMC	1 cut(s)	298
BseXI	GCAGC	1 cut(s)	366
BshFI	GGCC	1 cut(s)	341
BsmAI	GTCTC	1 cut(s)	385
BsnI	GGCC	1 cut(s)	341
Bso31I	GGTCTC	1 cut(s)	385
Bsp1286I	GDGCHC	2 cut(s)	224, 298
Bsp143I	GATC	6 cut(s)	143, 231, 251, 334, 375, 442
Bsp19I	CCATGG	1 cut(s)	170
BspACI	CCGC	1 cut(s)	117
BspANI	GGCC	1 cut(s)	341
BspCNI	CTCAG	1 cut(s)	450
BspLI	GGNNCC	1 cut(s)	223
BspPI	GGATC	1 cut(s)	259
BspTNI	GGTCTC	1 cut(s)	385
BsrI	ACTGG	1 cut(s)	386
BssECI	CCNNGG	6 cut(s)	170, 193, 217, 436, 591, 639
BssMI	GATC	6 cut(s)	143, 231, 251, 334, 375, 442
BssSI	CACGAG	2 cut(s)	291, 601
BssT1I	CCWWGG	3 cut(s)	170, 436, 591
Bst2BI	CACGAG	2 cut(s)	291, 601
Bst2UI	CCWGG	3 cut(s)	195, 218, 226
BstC8I	GCNNGC	2 cut(s)	114, 410
BstDEI	CTNAG	1 cut(s)	458
BstDSI	CCRYGG	2 cut(s)	170, 639
BstF5I	GGATG	3 cut(s)	369, 413, 635
BstKTI	GATC	6 cut(s)	146, 234, 254, 337, 378, 445
BstMAI	GTCTC	1 cut(s)	385
BstMBI	GATC	6 cut(s)	143, 231, 251, 334, 375, 442
BstMWI	GCNNNNNNNGC	4 cut(s)	99, 302, 360, 468
BstNI	CCWGG	3 cut(s)	195, 218, 226
BstSCI	CCNGG	3 cut(s)	193, 216, 224
BstSLI	GKGCMC	1 cut(s)	298
BstV1I	GCAGC	1 cut(s)	366
BstX2I	RGATCY	1 cut(s)	251
BstXI	CCANNNNNNTGG	1 cut(s)	640
BstYI	RGATCY	1 cut(s)	251
BsuRI	GGCC	1 cut(s)	341
BtgI	CCRYGG	2 cut(s)	170, 639
BtsCI	GGATG	3 cut(s)	369, 413, 635
Cac8I	GCNNGC	2 cut(s)	114, 410
Cfr13I	GGNCC	1 cut(s)	339
CviAII	CATG	1 cut(s)	171
DdeI	CTNAG	1 cut(s)	458
DpnI	GATC	6 cut(s)	145, 233, 253, 336, 377, 444
DpnII	GATC	6 cut(s)	143, 231, 251, 334, 375, 442
Eco130I	CCWWGG	3 cut(s)	170, 436, 591
Eco24I	GRGCYC	1 cut(s)	224
Eco31I	GGTCTC	1 cut(s)	385
Eco32I	GATATC	1 cut(s)	40
Eco57I	CTGAAG	1 cut(s)	448
EcoRII	CCWGG	3 cut(s)	193, 216, 224
EcoRV	GATATC	1 cut(s)	40
EcoT14I	CCWWGG	3 cut(s)	170, 436, 591
EcoT38I	GRGCYC	1 cut(s)	224
ErhI	CCWWGG	3 cut(s)	170, 436, 591
FaeI	CATG	1 cut(s)	174
FaiI	YATR	9 cut(s)	67, 100, 172, 303, 315, 365, 533, 566, 678
FatI	CATG	1 cut(s)	170
Fnu4HI	GCNGC	2 cut(s)	117, 355
FokI	GGATG	3 cut(s)	356, 400, 622
FriOI	GRGCYC	1 cut(s)	224
Fsp4HI	GCNGC	2 cut(s)	117, 355
GluI	GCNGC	2 cut(s)	117, 355
HaeIII	GGCC	1 cut(s)	341
Hin1II	CATG	1 cut(s)	174
HinfI	GANTC	3 cut(s)	188, 213, 528
HphI	GGTGA	1 cut(s)	452
Hpy166II	GTNNAC	1 cut(s)	628
Hpy188I	TCNGA	4 cut(s)	76, 459, 467, 527
Hpy188III	TCNNGA	1 cut(s)	373
Hpy8I	GTNNAC	1 cut(s)	628
HpyAV	CCTTC	1 cut(s)	530
HpyCH4V	TGCA	4 cut(s)	46, 354, 510, 684
HpyF10VI	GCNNNNNNNGC	4 cut(s)	99, 302, 360, 468
HpyF3I	CTNAG	1 cut(s)	458
Hsp92II	CATG	1 cut(s)	174
Kzo9I	GATC	6 cut(s)	143, 231, 251, 334, 375, 442
LmnI	GCTCC	3 cut(s)	163, 186, 227
Lsp1109I	GCAGC	1 cut(s)	366
LweI	GCATC	3 cut(s)	366, 378, 519
MaeIII	GTNAC	1 cut(s)	427
MalI	GATC	6 cut(s)	145, 233, 253, 336, 377, 444
MboI	GATC	6 cut(s)	143, 231, 251, 334, 375, 442
MboII	GAAGA	2 cut(s)	262, 265
MfeI	CAATTG	2 cut(s)	47, 349
MflI	RGATCY	1 cut(s)	251
MhlI	GDGCHC	2 cut(s)	224, 298
MluCI	AATT	5 cut(s)	47, 106, 198, 330, 349
MlyI	GAGTC	2 cut(s)	182, 222
MnlI	CCTC	8 cut(s)	122, 162, 171, 194, 272, 415, 418, 605
MseI	TTAA	3 cut(s)	279, 582, 691
MslI	CAYNNNNRTG	1 cut(s)	638
MspA1I	CMGCKG	1 cut(s)	119
MspR9I	CCNGG	3 cut(s)	195, 218, 226
MunI	CAATTG	2 cut(s)	47, 349
MvaI	CCWGG	3 cut(s)	195, 218, 226
MwoI	GCNNNNNNNGC	4 cut(s)	99, 302, 360, 468
NcoI	CCATGG	1 cut(s)	170
NdeII	GATC	6 cut(s)	143, 231, 251, 334, 375, 442
NlaIII	CATG	1 cut(s)	174
NlaIV	GGNNCC	1 cut(s)	223
OliI	CACNNNNGTG	1 cut(s)	638
PfeI	GAWTC	1 cut(s)	528
PkrI	GCNGC	2 cut(s)	118, 356
PleI	GAGTC	2 cut(s)	182, 221
PpsI	GAGTC	2 cut(s)	182, 221
PshBI	ATTAAT	1 cut(s)	279
Psp6I	CCWGG	3 cut(s)	193, 216, 224
PspGI	CCWGG	3 cut(s)	193, 216, 224
PspN4I	GGNNCC	1 cut(s)	223
PspPI	GGNCC	1 cut(s)	339
PsuI	RGATCY	1 cut(s)	251
RseI	CAYNNNNRTG	1 cut(s)	638
SaqAI	TTAA	3 cut(s)	279, 582, 691
SatI	GCNGC	2 cut(s)	117, 355
Sau3AI	GATC	6 cut(s)	143, 231, 251, 334, 375, 442
Sau96I	GGNCC	1 cut(s)	339
SchI	GAGTC	2 cut(s)	182, 222
ScrFI	CCNGG	3 cut(s)	195, 218, 226
SduI	GDGCHC	2 cut(s)	224, 298
SetI	ASST	9 cut(s)	133, 241, 324, 429, 438, 464, 480, 572, 649
SfaNI	GCATC	3 cut(s)	366, 378, 519
SmiMI	CAYNNNNRTG	1 cut(s)	638
Sse9I	AATT	5 cut(s)	47, 106, 198, 330, 349
SsiI	CCGC	1 cut(s)	117
SspI	AATATT	1 cut(s)	450
StyD4I	CCNGG	3 cut(s)	193, 216, 224
StyI	CCWWGG	3 cut(s)	170, 436, 591
TaqI	TCGA	4 cut(s)	186, 211, 445, 649
TaqII	GACCGA	1 cut(s)	409
TasI	AATT	5 cut(s)	47, 106, 198, 330, 349
TauI	GCSGC	1 cut(s)	119
TfiI	GAWTC	1 cut(s)	528
Tru1I	TTAA	3 cut(s)	279, 582, 691
Tru9I	TTAA	3 cut(s)	279, 582, 691
TseI	GCWGC	1 cut(s)	354
TspDTI	ATGAA	2 cut(s)	265, 520
TspGWI	ACGGA	1 cut(s)	628
VspI	ATTAAT	1 cut(s)	279
XapI	RAATTY	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.