Rroxscaffold_6G00410210

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000142
Physical Location & Seq
Reverse (-)
32631389 .. 32632433
1045 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00410210.1

Sequence Viewer

Length: 192 bp
ATGTTAGCTGGAATCTCACCTGGGGCTGGGGATCAGGACGACTGGGTCGGTGGGTTCTCGTCTGCATCATTTATCTGGTCCTCAAAGGTCCGGGATCTATCGCCCTATATAGAAGCAATTCATATTTTCAGCAACATAGGAGATTGCAGGTGGAGGTTGATCACAGAGGAGCTCAGATGGCGTCATCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

63

Amino Acids

7.18

Weight (kDa)

5.45

Isoelectric Point (pI)

83.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000142)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 138
AasI GACNNNNNNGTC 1 cut(s) 44
Acc36I ACCTGC 1 cut(s) 138
AclWI GGATC 2 cut(s) 39, 102
AcyI GRCGYC 1 cut(s) 181
AfiI CCNNNNNNNGG 1 cut(s) 26
AjnI CCWGG 1 cut(s) 19
AluBI AGCT 2 cut(s) 8, 172
AluI AGCT 2 cut(s) 8, 172
Alw21I GWGCWC 1 cut(s) 174
AlwI GGATC 2 cut(s) 39, 102
Asp700I GAANNNNTTC 1 cut(s) 117
AspS9I GGNCC 2 cut(s) 78, 88
AsuC2I CCSGG 1 cut(s) 92
AsuHPI GGTGA 1 cut(s) 9
AvaII GGWCC 2 cut(s) 78, 88
BanII GRGCYC 1 cut(s) 174
Bbv12I GWGCWC 1 cut(s) 174
BccI CCATC 1 cut(s) 171
BciT130I CCWGG 1 cut(s) 21
BclI TGATCA 1 cut(s) 159
BcnI CCSGG 1 cut(s) 92
BfuAI ACCTGC 1 cut(s) 138
Bme1390I CCNGG 2 cut(s) 21, 92
Bme18I GGWCC 2 cut(s) 78, 88
BmgT120I GGNCC 2 cut(s) 78, 88
BmrFI CCNGG 2 cut(s) 21, 92
BmrI ACTGGG 1 cut(s) 52
BmsI GCATC 1 cut(s) 74
BmuI ACTGGG 1 cut(s) 52
BpuMI CCSGG 1 cut(s) 92
BsaHI GRCGYC 1 cut(s) 181
BsaJI CCNNGG 1 cut(s) 20
Bsc4I CCNNNNNNNGG 1 cut(s) 26
Bse1I ACTGG 1 cut(s) 47
BseBI CCWGG 1 cut(s) 21
BseDI CCNNGG 1 cut(s) 20
BseLI CCNNNNNNNGG 1 cut(s) 26
BseMII CTCAG 1 cut(s) 187
BseNI ACTGG 1 cut(s) 47
BseRI GAGGAG 1 cut(s) 182
BseYI CCCAGC 1 cut(s) 26
BsiHKAI GWGCWC 1 cut(s) 174
BsiSI CCGG 1 cut(s) 91
BslI CCNNNNNNNGG 1 cut(s) 26
Bsp1286I GDGCHC 1 cut(s) 174
Bsp143I GATC 3 cut(s) 31, 94, 159
BspCNI CTCAG 1 cut(s) 186
BspMI ACCTGC 1 cut(s) 138
BspPI GGATC 2 cut(s) 39, 102
BsrI ACTGG 1 cut(s) 47
BssECI CCNNGG 1 cut(s) 20
BssMI GATC 3 cut(s) 31, 94, 159
BssNI GRCGYC 1 cut(s) 181
Bst2UI CCWGG 1 cut(s) 21
BstACI GRCGYC 1 cut(s) 181
BstDEI CTNAG 1 cut(s) 173
BstKTI GATC 3 cut(s) 34, 97, 162
BstMBI GATC 3 cut(s) 31, 94, 159
BstMWI GCNNNNNNNGC 1 cut(s) 178
BstNI CCWGG 1 cut(s) 21
BstSCI CCNGG 2 cut(s) 19, 90
BstX2I RGATCY 1 cut(s) 94
BstYI RGATCY 1 cut(s) 94
BveI ACCTGC 1 cut(s) 138
Cfr13I GGNCC 2 cut(s) 78, 88
CseI GACGC 1 cut(s) 170
CviJI RGCY 3 cut(s) 8, 26, 172
CviKI_1 RGCY 3 cut(s) 8, 26, 172
DdeI CTNAG 1 cut(s) 173
DpnI GATC 3 cut(s) 33, 96, 161
DpnII GATC 3 cut(s) 31, 94, 159
DrdI GACNNNNNNGTC 1 cut(s) 44
DseDI GACNNNNNNGTC 1 cut(s) 44
Ecl136II GAGCTC 1 cut(s) 172
Eco24I GRGCYC 1 cut(s) 174
Eco47I GGWCC 2 cut(s) 78, 88
Eco53kI GAGCTC 1 cut(s) 172
EcoICRI GAGCTC 1 cut(s) 172
EcoRII CCWGG 1 cut(s) 19
EcoT38I GRGCYC 1 cut(s) 174
FaiI YATR 4 cut(s) 108, 110, 123, 137
FbaI TGATCA 1 cut(s) 159
FriOI GRGCYC 1 cut(s) 174
GsaI CCCAGC 1 cut(s) 30
HapII CCGG 1 cut(s) 91
HgaI GACGC 1 cut(s) 170
Hin1I GRCGYC 1 cut(s) 181
HinfI GANTC 1 cut(s) 12
HpaII CCGG 1 cut(s) 91
HphI GGTGA 1 cut(s) 9
Hpy188I TCNGA 1 cut(s) 176
Hpy188III TCNNGA 1 cut(s) 35
HpyCH4V TGCA 2 cut(s) 65, 147
HpyF10VI GCNNNNNNNGC 1 cut(s) 178
HpyF3I CTNAG 1 cut(s) 173
Hsp92I GRCGYC 1 cut(s) 181
Ksp22I TGATCA 1 cut(s) 159
Kzo9I GATC 3 cut(s) 31, 94, 159
LmnI GCTCC 1 cut(s) 169
LpnPI CCDG 8 cut(s) 6, 12, 20, 28, 33, 61, 104, 133
LweI GCATC 1 cut(s) 74
MalI GATC 3 cut(s) 33, 96, 161
MboI GATC 3 cut(s) 31, 94, 159
MflI RGATCY 1 cut(s) 94
MhlI GDGCHC 1 cut(s) 174
MluCI AATT 1 cut(s) 117
MnlI CCTC 3 cut(s) 91, 147, 160
MroXI GAANNNNTTC 1 cut(s) 117
MspI CCGG 1 cut(s) 91
MspR9I CCNGG 2 cut(s) 21, 92
MvaI CCWGG 1 cut(s) 21
MwoI GCNNNNNNNGC 1 cut(s) 178
NciI CCSGG 1 cut(s) 92
NdeII GATC 3 cut(s) 31, 94, 159
PaqCI CACCTGC 1 cut(s) 138
PdmI GAANNNNTTC 1 cut(s) 117
PfeI GAWTC 1 cut(s) 12
PflFI GACNNNGTC 1 cut(s) 44
PfoI TCCNGGA 1 cut(s) 90
Psp124BI GAGCTC 1 cut(s) 174
Psp6I CCWGG 1 cut(s) 19
PspFI CCCAGC 1 cut(s) 26
PspGI CCWGG 1 cut(s) 19
PspPI GGNCC 2 cut(s) 78, 88
PsuI RGATCY 1 cut(s) 94
PsyI GACNNNGTC 1 cut(s) 44
SacI GAGCTC 1 cut(s) 174
Sau3AI GATC 3 cut(s) 31, 94, 159
Sau96I GGNCC 2 cut(s) 78, 88
ScrFI CCNGG 2 cut(s) 21, 92
SduI GDGCHC 1 cut(s) 174
SetI ASST 6 cut(s) 10, 22, 90, 152, 158, 174
SfaNI GCATC 1 cut(s) 74
SinI GGWCC 2 cut(s) 78, 88
Sse9I AATT 1 cut(s) 117
SstI GAGCTC 1 cut(s) 174
StyD4I CCNGG 2 cut(s) 19, 90
TasI AATT 1 cut(s) 117
TfiI GAWTC 1 cut(s) 12
TspDTI ATGAA 1 cut(s) 110
Tth111I GACNNNGTC 1 cut(s) 44
VpaK11BI GGWCC 2 cut(s) 78, 88
XmnI GAANNNNTTC 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.