Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000142

Physical Location & Seq

Genomic Coordinates Forward (+)

85329389 .. 85330605

Gene Structure 1217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG630500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGTCTATCCAAAACCACAGGTGTTCCAAAGAACATGATCATAATCAGGGGAGCAAGTTGTTGAAACAAGTCCCAGATGAGATTATGGAATTGATTGTGCAGCGACTAAACATATTTGACTACCTTGCGTTTCGTCAAGTATGCCGTTCTTGGCGTGCCCTAAGCAAGCGCTGCTCTCCTGCTCCTCAGCTTCCATGGCTTCTGTTTGATTCTGTCCCTTTCTACATCCAAGACCACTGCTTTGTTAGCTGTCTCAGTGATCCCAGGACTCACAATTCAGTCCCGCCAAAGTTGTTTTATGAGTCGAGATGCCTCGGATCAGTTGAAGGCTGGTTGATCATGGCTGCGCGCATTCATAGAAGTTCTCCTGTTGTTAACTTGTTATTGAATCCAATATCAGGTTCCCGAGTCGAGCTCCCACCACAATCCACTATTTCAGGCCCTCGGGGCACTAGACTCGACTTCTTACGGAAAGCAGTAGCCTCTTTCCAACAAACGAGGCTAGAACAGTGTCTTGTGGCTAGCCTTTGTGACGCTGGTTGTTTGGCTTTCTGTAGAAACATTGATGAATCATGGACCCTCGTTAAGGCCAGAGAGAGGAATGTGGTTCTCAGATTTGAAGACGTAGAAATAATCGATGGGAAATTATATGCTGCAACAACCCACAGCACCTTAATGGTGTTTAACATCCAAGGTGTTACCTATACGGCTGATAGGGTGGTTAAGCTTCCCTATTTCAGTATTGTAGTCCGTAGTGTGATGGATAGCCACACTTACACCACTGGTCCCTATATAGCAAAAGATGTTGCGACAAAGGACCTGTTTATCGTTTATTCTAAAAGAATTGCCTCATGTCCATTTCCTTATACTCAAGGATTTCGAGCGTTTAGGTTAGAGCGCAATAGCAGTGATGATCCTCACTGTGAAGAAGTTTTTGATCTTGGTGACCGGACATTGTTTGTAAGCGATCTTGCCACTAAAATTATATCTTCTAGCAGCGACCCTAGTGGTTCCGATGATAGGAGACTTGAAAGAAACTGTATTTATTATGTTTTATATCACAAGTATTATAAAGAGTCCGAGATAGAATTTGGCGTATTTTCCTTCATAGATAAGAGCATCAAACACTTGACTTTCCCTAAGTATGCCTCCCTTGAGGGATTGTTCAAAGGAATGTCGGTTTGGTTCGCACCAAATCCTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010468 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030684 GO:0030686 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070545 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904 GO:2000232

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT_2 Pescadillo_N

Protein Analysis

401

Amino Acids

45.94

Weight (kDa)

8.48

Isoelectric Point (pI)

53.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	23 - 59	5.1e-09	F-box domain
F-box-like	PF12937	23 - 56	6.3e-06	F-box-like
Beta-prop_KIB1-4	PF03478	86 - 367	9.7e-33	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000142)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica	MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica	Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis	pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis	RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata	RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora	Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa	Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha	Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana	Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1071
AccII	CGCG	1 cut(s)	349
AciI	CCGC	1 cut(s)	284
AclWI	GGATC	3 cut(s)	254, 325, 908
AcsI	RAATTY	1 cut(s)	1088
AfeI	AGCGCT	1 cut(s)	170
AfiI	CCNNNNNNNGG	4 cut(s)	398, 586, 597, 1020
AgsI	TTSAA	6 cut(s)	64, 326, 388, 620, 1031, 1168
AjnI	CCWGG	1 cut(s)	263
AjuI	GAANNNNNNNTTGG	4 cut(s)	385, 417, 1165, 1197
AluBI	AGCT	4 cut(s)	190, 249, 415, 727
AluI	AGCT	4 cut(s)	190, 249, 415, 727
Alw21I	GWGCWC	1 cut(s)	417
Alw26I	GTCTC	2 cut(s)	257, 1018
AlwI	GGATC	3 cut(s)	254, 325, 908
Ama87I	CYCGRG	2 cut(s)	405, 444
Aor51HI	AGCGCT	1 cut(s)	170
AoxI	GGCC	2 cut(s)	439, 588
ApeKI	GCWGC	5 cut(s)	100, 171, 344, 653, 996
ApoI	RAATTY	1 cut(s)	1088
ArsI	GACNNNNNNTTYG	2 cut(s)	224, 256
AspLEI	GCGC	4 cut(s)	171, 349, 351, 900
AspS9I	GGNCC	4 cut(s)	440, 576, 785, 817
AsuHPI	GGTGA	1 cut(s)	956
AsuNHI	GCTAGC	1 cut(s)	521
AvaI	CYCGRG	2 cut(s)	405, 444
AvaII	GGWCC	3 cut(s)	576, 785, 817
BaeGI	GKGCMC	2 cut(s)	160, 452
BanII	GRGCYC	1 cut(s)	417
BbsI	GAAGAC	1 cut(s)	627
Bbv12I	GWGCWC	1 cut(s)	417
BbvCI	CCTCAGC	1 cut(s)	186
BbvI	GCAGC	5 cut(s)	112, 158, 331, 640, 1008
BccI	CCATC	2 cut(s)	632, 754
BceAI	ACGGC	2 cut(s)	129, 723
BcgI	CGANNNNNNTGC	2 cut(s)	439, 473
BciT130I	CCWGG	1 cut(s)	265
BclI	TGATCA	2 cut(s)	37, 336
BcoDI	GTCTC	2 cut(s)	257, 1018
BfaI	CTAG	5 cut(s)	453, 503, 522, 993, 1005
BfmI	CTRYAG	1 cut(s)	553
BfoI	RGCGCY	1 cut(s)	172
BglI	GCCNNNNNGGC	1 cut(s)	447
BisI	GCNGC	5 cut(s)	101, 172, 345, 654, 997
BlsI	GCNGC	5 cut(s)	102, 173, 346, 655, 998
Bme1390I	CCNGG	1 cut(s)	265
Bme18I	GGWCC	3 cut(s)	576, 785, 817
BmeT110I	CYCGRG	2 cut(s)	405, 444
BmgT120I	GGNCC	4 cut(s)	440, 576, 785, 817
BmiI	GGNNCC	4 cut(s)	403, 578, 787, 1012
BmrFI	CCNGG	1 cut(s)	265
BmsI	GCATC	2 cut(s)	299, 1128
BmtI	GCTAGC	1 cut(s)	525
BpiI	GAAGAC	1 cut(s)	627
BplI	GAGNNNNNCTC	2 cut(s)	399, 431
Bpu10I	CCTNAGC	2 cut(s)	161, 186
BpuEI	CTTGAG	2 cut(s)	855, 1175
Bsa29I	ATCGAT	1 cut(s)	636
BsaBI	GATNNNNATC	1 cut(s)	42
BsaJI	CCNNGG	6 cut(s)	194, 263, 313, 443, 691, 1199
BsaWI	WCCGGW	1 cut(s)	948
Bsc4I	CCNNNNNNNGG	4 cut(s)	398, 586, 597, 1020
Bse1I	ACTGG	1 cut(s)	787
Bse8I	GATNNNNATC	1 cut(s)	42
BseBI	CCWGG	1 cut(s)	265
BseCI	ATCGAT	1 cut(s)	636
BseDI	CCNNGG	6 cut(s)	194, 263, 313, 443, 691, 1199
BseGI	GGATG	2 cut(s)	225, 687
BseJI	GATNNNNATC	1 cut(s)	42
BseLI	CCNNNNNNNGG	4 cut(s)	398, 586, 597, 1020
BseMII	CTCAG	3 cut(s)	200, 268, 625
BseNI	ACTGG	1 cut(s)	787
BsePI	GCGCGC	1 cut(s)	347
BseRI	GAGGAG	1 cut(s)	174
BseSI	GKGCMC	2 cut(s)	160, 452
BseXI	GCAGC	5 cut(s)	112, 158, 331, 640, 1008
BsgI	GTGCAG	1 cut(s)	119
Bsh1236I	CGCG	1 cut(s)	349
BshFI	GGCC	2 cut(s)	441, 590
BshVI	ATCGAT	1 cut(s)	636
BsiHKAI	GWGCWC	1 cut(s)	417
BsiHKCI	CYCGRG	2 cut(s)	405, 444
BsiSI	CCGG	1 cut(s)	949
BslFI	GGGAC	4 cut(s)	56, 200, 266, 771
BslI	CCNNNNNNNGG	4 cut(s)	398, 586, 597, 1020
BsmAI	GTCTC	2 cut(s)	257, 1018
BsmFI	GGGAC	4 cut(s)	56, 200, 266, 771
BsmI	GAATGC	1 cut(s)	351
BsnI	GGCC	2 cut(s)	441, 590
BsoBI	CYCGRG	2 cut(s)	405, 444
Bsp1286I	GDGCHC	3 cut(s)	160, 417, 452
Bsp143I	GATC	7 cut(s)	37, 259, 317, 336, 913, 937, 967
Bsp19I	CCATGG	1 cut(s)	194
BspACI	CCGC	1 cut(s)	284
BspANI	GGCC	2 cut(s)	441, 590
BspCNI	CTCAG	3 cut(s)	199, 267, 624
BspDI	ATCGAT	1 cut(s)	636
BspFNI	CGCG	1 cut(s)	349
BspLI	GGNNCC	4 cut(s)	403, 578, 787, 1012
BspOI	GCTAGC	1 cut(s)	525
BspPI	GGATC	3 cut(s)	254, 325, 908
BsrI	ACTGG	1 cut(s)	787
BssECI	CCNNGG	6 cut(s)	194, 263, 313, 443, 691, 1199
BssHII	GCGCGC	1 cut(s)	347
BssMI	GATC	7 cut(s)	37, 259, 317, 336, 913, 937, 967
BssT1I	CCWWGG	3 cut(s)	194, 691, 1199
Bst2UI	CCWGG	1 cut(s)	265
Bst4CI	ACNGT	3 cut(s)	510, 923, 1040
BstAPI	GCANNNNNTGC	1 cut(s)	171
BstC8I	GCNNGC	4 cut(s)	156, 167, 349, 523
BstDEI	CTNAG	5 cut(s)	161, 186, 254, 611, 1140
BstDSI	CCRYGG	1 cut(s)	194
BstEII	GGTNACC	1 cut(s)	944
BstENI	CCTNNNNNAGG	1 cut(s)	584
BstF5I	GGATG	2 cut(s)	225, 687
BstFNI	CGCG	1 cut(s)	349
BstH2I	RGCGCY	1 cut(s)	172
BstHHI	GCGC	4 cut(s)	171, 349, 351, 900
BstKTI	GATC	7 cut(s)	40, 262, 320, 339, 916, 940, 970
BstMAI	GTCTC	2 cut(s)	257, 1018
BstMBI	GATC	7 cut(s)	37, 259, 317, 336, 913, 937, 967
BstMWI	GCNNNNNNNGC	4 cut(s)	171, 196, 246, 447
BstNI	CCWGG	1 cut(s)	265
BstPI	GGTNACC	1 cut(s)	944
BstSCI	CCNGG	1 cut(s)	263
BstSFI	CTRYAG	1 cut(s)	553
BstSLI	GKGCMC	2 cut(s)	160, 452
BstUI	CGCG	1 cut(s)	349
BstV1I	GCAGC	5 cut(s)	112, 158, 331, 640, 1008
BstV2I	GAAGAC	1 cut(s)	627
BstXI	CCANNNNNNTGG	1 cut(s)	1200
Bsu15I	ATCGAT	1 cut(s)	636
BsuRI	GGCC	2 cut(s)	441, 590
BsuTUI	ATCGAT	1 cut(s)	636
BtgI	CCRYGG	1 cut(s)	194
BtsCI	GGATG	2 cut(s)	225, 687
BtsI	GCAGTG	2 cut(s)	235, 913
BtsIMutI	CAGTG	6 cut(s)	235, 262, 515, 780, 913, 919
Cac8I	GCNNGC	4 cut(s)	156, 167, 349, 523
CfoI	GCGC	4 cut(s)	171, 349, 351, 900
Cfr13I	GGNCC	4 cut(s)	440, 576, 785, 817
ClaI	ATCGAT	1 cut(s)	636
CseI	GACGC	1 cut(s)	542
CviAII	CATG	5 cut(s)	35, 195, 340, 573, 852
DdeI	CTNAG	5 cut(s)	161, 186, 254, 611, 1140
DpnI	GATC	7 cut(s)	39, 261, 319, 338, 915, 939, 969
DpnII	GATC	7 cut(s)	37, 259, 317, 336, 913, 937, 967
Ecl136II	GAGCTC	1 cut(s)	415
Eco130I	CCWWGG	3 cut(s)	194, 691, 1199
Eco24I	GRGCYC	1 cut(s)	417
Eco47I	GGWCC	3 cut(s)	576, 785, 817
Eco47III	AGCGCT	1 cut(s)	170
Eco53kI	GAGCTC	1 cut(s)	415
Eco88I	CYCGRG	2 cut(s)	405, 444
Eco91I	GGTNACC	1 cut(s)	944
EcoICRI	GAGCTC	1 cut(s)	415
EcoNI	CCTNNNNNAGG	1 cut(s)	584
EcoO109I	RGGNCCY	2 cut(s)	440, 817
EcoO65I	GGTNACC	1 cut(s)	944
EcoRII	CCWGG	1 cut(s)	263
EcoT14I	CCWWGG	3 cut(s)	194, 691, 1199
EcoT38I	GRGCYC	1 cut(s)	417
ErhI	CCWWGG	3 cut(s)	194, 691, 1199
FaeI	CATG	5 cut(s)	38, 198, 343, 576, 855
FaqI	GGGAC	4 cut(s)	56, 200, 266, 771
FatI	CATG	5 cut(s)	34, 194, 339, 572, 851
FauI	CCCGC	1 cut(s)	291
FbaI	TGATCA	2 cut(s)	37, 336
Fnu4HI	GCNGC	5 cut(s)	101, 172, 345, 654, 997
FokI	GGATG	2 cut(s)	212, 674
FriOI	GRGCYC	1 cut(s)	417
Fsp4HI	GCNGC	5 cut(s)	101, 172, 345, 654, 997
FspBI	CTAG	5 cut(s)	453, 503, 522, 993, 1005
GlaI	GCGC	4 cut(s)	170, 348, 350, 899
GluI	GCNGC	5 cut(s)	101, 172, 345, 654, 997
HaeII	RGCGCY	1 cut(s)	172
HaeIII	GGCC	2 cut(s)	441, 590
HapII	CCGG	1 cut(s)	949
HgaI	GACGC	1 cut(s)	542
HhaI	GCGC	4 cut(s)	171, 349, 351, 900
Hin1II	CATG	5 cut(s)	38, 198, 343, 576, 855
Hin6I	GCGC	4 cut(s)	169, 347, 349, 898
HinP1I	GCGC	4 cut(s)	169, 347, 349, 898
HincII	GTYRAC	1 cut(s)	376
HindII	GTYRAC	1 cut(s)	376
HindIII	AAGCTT	1 cut(s)	725
HinfI	GANTC	8 cut(s)	209, 268, 302, 388, 408, 456, 569, 1076
HpaI	GTTAAC	1 cut(s)	376
HpaII	CCGG	1 cut(s)	949
HphI	GGTGA	1 cut(s)	956
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	4 cut(s)	317, 614, 1015, 1081
Hpy188III	TCNNGA	2 cut(s)	306, 405
Hpy8I	GTNNAC	1 cut(s)	376
HpyAV	CCTTC	2 cut(s)	320, 1114
HpyCH4III	ACNGT	3 cut(s)	510, 923, 1040
HpyCH4IV	ACGT	1 cut(s)	624
HpyCH4V	TGCA	2 cut(s)	100, 656
HpyF10VI	GCNNNNNNNGC	4 cut(s)	171, 196, 246, 447
HpyF3I	CTNAG	5 cut(s)	161, 186, 254, 611, 1140
HpySE526I	ACGT	1 cut(s)	624
Hsp92II	CATG	5 cut(s)	38, 198, 343, 576, 855
HspAI	GCGC	4 cut(s)	169, 347, 349, 898
Ksp22I	TGATCA	2 cut(s)	37, 336
KspAI	GTTAAC	1 cut(s)	376
Kzo9I	GATC	7 cut(s)	37, 259, 317, 336, 913, 937, 967
LmnI	GCTCC	3 cut(s)	51, 187, 420
Lsp1109I	GCAGC	5 cut(s)	112, 158, 331, 640, 1008
LweI	GCATC	2 cut(s)	299, 1128
MaeI	CTAG	5 cut(s)	453, 503, 522, 993, 1005
MaeII	ACGT	1 cut(s)	624
MaeIII	GTNAC	3 cut(s)	530, 697, 944
MalI	GATC	7 cut(s)	39, 261, 319, 338, 915, 939, 969
MboI	GATC	7 cut(s)	37, 259, 317, 336, 913, 937, 967
MboII	GAAGA	3 cut(s)	632, 938, 981
MhlI	GDGCHC	3 cut(s)	160, 417, 452
MluCI	AATT	6 cut(s)	89, 274, 644, 843, 981, 1088
MlyI	GAGTC	5 cut(s)	262, 311, 417, 450, 1085
MmeI	TCCRAC	1 cut(s)	514
MseI	TTAA	5 cut(s)	375, 585, 674, 684, 723
MslI	CAYNNNNRTG	1 cut(s)	674
MspI	CCGG	1 cut(s)	949
MspR9I	CCNGG	1 cut(s)	265
Mva1269I	GAATGC	1 cut(s)	351
MvaI	CCWGG	1 cut(s)	265
MvnI	CGCG	1 cut(s)	349
MwoI	GCNNNNNNNGC	4 cut(s)	171, 196, 246, 447
NcoI	CCATGG	1 cut(s)	194
NdeII	GATC	7 cut(s)	37, 259, 317, 336, 913, 937, 967
NheI	GCTAGC	1 cut(s)	521
NlaIII	CATG	5 cut(s)	38, 198, 343, 576, 855
NlaIV	GGNNCC	4 cut(s)	403, 578, 787, 1012
NmuCI	GTSAC	2 cut(s)	530, 944
PauI	GCGCGC	1 cut(s)	347
PctI	GAATGC	1 cut(s)	351
PfeI	GAWTC	3 cut(s)	209, 388, 569
PkrI	GCNGC	5 cut(s)	102, 173, 346, 655, 998
PleI	GAGTC	5 cut(s)	262, 310, 416, 450, 1084
PpsI	GAGTC	5 cut(s)	262, 310, 416, 450, 1084
PpuMI	RGGWCCY	1 cut(s)	817
PsiI	TTATAA	1 cut(s)	1071
Psp124BI	GAGCTC	1 cut(s)	417
Psp5II	RGGWCCY	1 cut(s)	817
Psp6I	CCWGG	1 cut(s)	263
PspEI	GGTNACC	1 cut(s)	944
PspGI	CCWGG	1 cut(s)	263
PspN4I	GGNNCC	4 cut(s)	403, 578, 787, 1012
PspPI	GGNCC	4 cut(s)	440, 576, 785, 817
PspPPI	RGGWCCY	1 cut(s)	817
PteI	GCGCGC	1 cut(s)	347
RseI	CAYNNNNRTG	1 cut(s)	674
SacI	GAGCTC	1 cut(s)	417
SaqAI	TTAA	5 cut(s)	375, 585, 674, 684, 723
SatI	GCNGC	5 cut(s)	101, 172, 345, 654, 997
Sau3AI	GATC	7 cut(s)	37, 259, 317, 336, 913, 937, 967
Sau96I	GGNCC	4 cut(s)	440, 576, 785, 817
SchI	GAGTC	5 cut(s)	262, 311, 417, 450, 1085
ScrFI	CCNGG	1 cut(s)	265
SduI	GDGCHC	3 cut(s)	160, 417, 452
SfaNI	GCATC	2 cut(s)	299, 1128
SfcI	CTRYAG	1 cut(s)	553
SinI	GGWCC	3 cut(s)	576, 785, 817
SmiMI	CAYNNNNRTG	1 cut(s)	674
SmlI	CTYRAG	2 cut(s)	870, 1154
SmoI	CTYRAG	2 cut(s)	870, 1154
Sse9I	AATT	6 cut(s)	89, 274, 644, 843, 981, 1088
SsiI	CCGC	1 cut(s)	284
SspMI	CTAG	5 cut(s)	453, 503, 522, 993, 1005
SstI	GAGCTC	1 cut(s)	417
StyD4I	CCNGG	1 cut(s)	263
StyI	CCWWGG	3 cut(s)	194, 691, 1199
TaaI	ACNGT	3 cut(s)	510, 923, 1040
TaiI	ACGT	1 cut(s)	627
TaqI	TCGA	5 cut(s)	305, 411, 459, 636, 880
TasI	AATT	6 cut(s)	89, 274, 644, 843, 981, 1088
TfiI	GAWTC	3 cut(s)	209, 388, 569
Tru1I	TTAA	5 cut(s)	375, 585, 674, 684, 723
Tru9I	TTAA	5 cut(s)	375, 585, 674, 684, 723
TscAI	CASTG	6 cut(s)	242, 262, 515, 787, 913, 926
TseFI	GTSAC	2 cut(s)	530, 944
TseI	GCWGC	5 cut(s)	100, 171, 344, 653, 996
Tsp45I	GTSAC	2 cut(s)	530, 944
TspDTI	ATGAA	3 cut(s)	344, 582, 1096
TspGWI	ACGGA	2 cut(s)	484, 740
TspRI	CASTG	6 cut(s)	242, 262, 515, 787, 913, 926
VpaK11BI	GGWCC	3 cut(s)	576, 785, 817
XagI	CCTNNNNNAGG	1 cut(s)	584
XapI	RAATTY	1 cut(s)	1088
XspI	CTAG	5 cut(s)	453, 503, 522, 993, 1005

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.