Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000142

Physical Location & Seq

Genomic Coordinates Reverse (-)

82038550 .. 82039895

Gene Structure 1346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG599100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGCTCCCATCACAGTCCACCATTCTGGACTTTGACGACAACACTTCCCCCCGGTTCTTGAGTAAAATTGTAGCCTCTTCACCACCAGCATCACCAACAAAGCAACACAACTGTCTTGTGGCTGCTCTTGGTTCTCGAGGTCGTTTTTTGGCTATTTGTAGGCCAACTGATACATCATGGACCCTCATTGAGACCATAGATGGCCACATAGTTTATGATATAGAAGTAATTGATCAGAAATTATATGTTGGATGTATGTACGGGCCGGATTTACTGGAATTTGACATACTCTCTGAAGATGCCAATGTCACTAGGGCCAAAATAAATTGTCAGCAATATTTTTCTGTTTCGAAATGGATACGGTACCCTCGTCTAGCAAAAGATACTGCATCCAAGGAATTGTTTATAATTCTAAGTCTAAGTTGTATGAGAAAAAGATTCCGAGTATATAAGATGGAAAGCAATACTGGCGGTGAGCCATCGTGCAAGGAGGTTACTGACCTTGGTGAGCGAACATTGTTTCAGAGCAACAAAAGCAATAAGGTCATCAATGACAAGACACTTCGGAAAAACTGCATCTATTGTGCTTACGATCTTGAAGATGGTTATGGGCATGGGTTGTATTCCTTGGCAGATAGGAGCATCGAACGGGTTTACTTTCCTATGGGTTACTCGTCTGCCGGCTGTCAAACTATTTGGTTCACACCGCATCCGTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010468 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030684 GO:0030686 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070545 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904 GO:2000232

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT_2 Pescadillo_N

Protein Analysis

239

Amino Acids

27.16

Weight (kDa)

7.51

Isoelectric Point (pI)

48.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	15 - 208	3.7e-19	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000142)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica	MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica	Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis	pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis	RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata	RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora	Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa	Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha	Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana	Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	407
Acc65I	GGTACC	1 cut(s)	363
AccB1I	GGYRCC	1 cut(s)	363
AciI	CCGC	2 cut(s)	471, 707
AcoI	YGGCCR	1 cut(s)	202
AcsI	RAATTY	1 cut(s)	278
AcuI	CTGAAG	1 cut(s)	315
AfaI	GTAC	2 cut(s)	260, 365
AgsI	TTSAA	1 cut(s)	599
Alw26I	GTCTC	1 cut(s)	185
Ama87I	CYCGRG	1 cut(s)	135
AoxI	GGCC	4 cut(s)	161, 202, 263, 315
ApeKI	GCWGC	1 cut(s)	122
ApoI	RAATTY	1 cut(s)	278
Asp718I	GGTACC	1 cut(s)	363
AspS9I	GGNCC	3 cut(s)	180, 263, 315
AsuC2I	CCSGG	1 cut(s)	52
AsuHPI	GGTGA	4 cut(s)	72, 84, 485, 518
AsuII	TTCGAA	1 cut(s)	350
AvaI	CYCGRG	1 cut(s)	135
AvaII	GGWCC	1 cut(s)	180
BaeI	ACNNNNGTAYC	2 cut(s)	355, 388
BalI	TGGCCA	1 cut(s)	204
BanI	GGYRCC	1 cut(s)	363
BbvI	GCAGC	1 cut(s)	109
BccI	CCATC	5 cut(s)	16, 194, 448, 487, 596
BciVI	GTATCC	1 cut(s)	351
BclI	TGATCA	1 cut(s)	232
BcnI	CCSGG	1 cut(s)	52
BcoDI	GTCTC	1 cut(s)	185
BfaI	CTAG	2 cut(s)	312, 374
BfuI	GTATCC	1 cut(s)	351
BisI	GCNGC	1 cut(s)	123
BlsI	GCNGC	1 cut(s)	124
Bme1390I	CCNGG	1 cut(s)	52
Bme18I	GGWCC	1 cut(s)	180
BmeT110I	CYCGRG	1 cut(s)	135
BmgT120I	GGNCC	3 cut(s)	180, 263, 315
BmiI	GGNNCC	2 cut(s)	182, 365
BmrFI	CCNGG	1 cut(s)	52
BmsI	GCATC	5 cut(s)	98, 289, 398, 585, 651
Bpu14I	TTCGAA	1 cut(s)	350
BpuEI	CTTGAG	1 cut(s)	79
BpuMI	CCSGG	1 cut(s)	52
BsaI	GGTCTC	1 cut(s)	185
BsaJI	CCNNGG	5 cut(s)	50, 393, 502, 627, 713
Bse118I	RCCGGY	1 cut(s)	680
Bse1I	ACTGG	2 cut(s)	279, 472
BseDI	CCNNGG	5 cut(s)	50, 393, 502, 627, 713
BseGI	GGATG	3 cut(s)	257, 389, 709
BseNI	ACTGG	2 cut(s)	279, 472
BseXI	GCAGC	1 cut(s)	109
BshFI	GGCC	4 cut(s)	163, 204, 265, 317
BshNI	GGYRCC	1 cut(s)	363
BsiHKCI	CYCGRG	1 cut(s)	135
BsiSI	CCGG	3 cut(s)	52, 266, 681
BsmAI	GTCTC	1 cut(s)	185
BsnI	GGCC	4 cut(s)	163, 204, 265, 317
Bso31I	GGTCTC	1 cut(s)	185
BsoBI	CYCGRG	1 cut(s)	135
Bsp119I	TTCGAA	1 cut(s)	350
Bsp143I	GATC	2 cut(s)	232, 592
BspACI	CCGC	2 cut(s)	471, 707
BspANI	GGCC	4 cut(s)	163, 204, 265, 317
BspLI	GGNNCC	2 cut(s)	182, 365
BspT104I	TTCGAA	1 cut(s)	350
BspT107I	GGYRCC	1 cut(s)	363
BspTNI	GGTCTC	1 cut(s)	185
BsrFI	RCCGGY	1 cut(s)	680
BsrI	ACTGG	2 cut(s)	279, 472
BssAI	RCCGGY	1 cut(s)	680
BssECI	CCNNGG	5 cut(s)	50, 393, 502, 627, 713
BssMI	GATC	2 cut(s)	232, 592
BssT1I	CCWWGG	3 cut(s)	393, 502, 627
Bst4CI	ACNGT	3 cut(s)	15, 113, 363
Bst6I	CTCTTC	1 cut(s)	82
BstBI	TTCGAA	1 cut(s)	350
BstC8I	GCNNGC	1 cut(s)	682
BstDEI	CTNAG	2 cut(s)	413, 419
BstDSI	CCRYGG	1 cut(s)	713
BstF5I	GGATG	3 cut(s)	257, 389, 709
BstKTI	GATC	2 cut(s)	235, 595
BstMAI	GTCTC	1 cut(s)	185
BstMBI	GATC	2 cut(s)	232, 592
BstMWI	GCNNNNNNNGC	2 cut(s)	468, 534
BstSCI	CCNGG	1 cut(s)	50
BstV1I	GCAGC	1 cut(s)	109
BstXI	CCANNNNNNTGG	1 cut(s)	25
BsuI	GTATCC	1 cut(s)	351
BsuRI	GGCC	4 cut(s)	163, 204, 265, 317
BtgI	CCRYGG	1 cut(s)	713
BtsCI	GGATG	3 cut(s)	257, 389, 709
Cac8I	GCNNGC	1 cut(s)	682
Cfr10I	RCCGGY	1 cut(s)	680
Cfr13I	GGNCC	3 cut(s)	180, 263, 315
Csp6I	GTAC	2 cut(s)	259, 364
CviAII	CATG	2 cut(s)	177, 614
CviJI	RGCY	9 cut(s)	74, 122, 152, 163, 204, 265, 317, 478, 684
CviKI_1	RGCY	9 cut(s)	74, 122, 152, 163, 204, 265, 317, 478, 684
CviQI	GTAC	2 cut(s)	259, 364
DdeI	CTNAG	2 cut(s)	413, 419
DpnI	GATC	2 cut(s)	234, 594
DpnII	GATC	2 cut(s)	232, 592
EaeI	YGGCCR	1 cut(s)	202
Eam1104I	CTCTTC	1 cut(s)	82
EarI	CTCTTC	1 cut(s)	82
Eco130I	CCWWGG	3 cut(s)	393, 502, 627
Eco31I	GGTCTC	1 cut(s)	185
Eco47I	GGWCC	1 cut(s)	180
Eco57I	CTGAAG	1 cut(s)	315
Eco88I	CYCGRG	1 cut(s)	135
EcoT14I	CCWWGG	3 cut(s)	393, 502, 627
ErhI	CCWWGG	3 cut(s)	393, 502, 627
FaeI	CATG	2 cut(s)	180, 617
FatI	CATG	2 cut(s)	176, 613
FbaI	TGATCA	1 cut(s)	232
Fnu4HI	GCNGC	1 cut(s)	123
FokI	GGATG	3 cut(s)	264, 376, 696
Fsp4HI	GCNGC	1 cut(s)	123
FspBI	CTAG	2 cut(s)	312, 374
GluI	GCNGC	1 cut(s)	123
HaeIII	GGCC	4 cut(s)	163, 204, 265, 317
HapII	CCGG	3 cut(s)	52, 266, 681
Hin1II	CATG	2 cut(s)	180, 617
HinfI	GANTC	1 cut(s)	438
HpaII	CCGG	3 cut(s)	52, 266, 681
HphI	GGTGA	4 cut(s)	72, 84, 485, 518
Hpy166II	GTNNAC	3 cut(s)	18, 655, 702
Hpy188I	TCNGA	5 cut(s)	237, 295, 443, 525, 567
Hpy188III	TCNNGA	4 cut(s)	26, 58, 135, 596
Hpy8I	GTNNAC	3 cut(s)	18, 655, 702
HpyCH4III	ACNGT	3 cut(s)	15, 113, 363
HpyCH4V	TGCA	3 cut(s)	389, 486, 576
HpyF10VI	GCNNNNNNNGC	2 cut(s)	468, 534
HpyF3I	CTNAG	2 cut(s)	413, 419
Hsp92II	CATG	2 cut(s)	180, 617
KpnI	GGTACC	1 cut(s)	367
KroI	GCCGGC	1 cut(s)	680
KroNI	GCCGGC	1 cut(s)	682
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	2 cut(s)	232, 592
LmnI	GCTCC	2 cut(s)	9, 639
LpnPI	CCDG	7 cut(s)	11, 65, 99, 260, 279, 453, 694
Lsp1109I	GCAGC	1 cut(s)	109
LweI	GCATC	5 cut(s)	98, 289, 398, 585, 651
MaeI	CTAG	2 cut(s)	312, 374
MaeIII	GTNAC	3 cut(s)	307, 493, 668
MalI	GATC	2 cut(s)	234, 594
MboI	GATC	2 cut(s)	232, 592
MboII	GAAGA	3 cut(s)	69, 308, 611
MlsI	TGGCCA	1 cut(s)	204
MluCI	AATT	7 cut(s)	66, 228, 239, 278, 325, 398, 408
MluNI	TGGCCA	1 cut(s)	204
MmeI	TCCRAC	1 cut(s)	229
MnlI	CCTC	5 cut(s)	85, 131, 194, 378, 484
Mox20I	TGGCCA	1 cut(s)	204
MroNI	GCCGGC	1 cut(s)	680
MscI	TGGCCA	1 cut(s)	204
Msp20I	TGGCCA	1 cut(s)	204
MspI	CCGG	3 cut(s)	52, 266, 681
MspR9I	CCNGG	1 cut(s)	52
MwoI	GCNNNNNNNGC	2 cut(s)	468, 534
NaeI	GCCGGC	1 cut(s)	682
NciI	CCSGG	1 cut(s)	52
NdeII	GATC	2 cut(s)	232, 592
NgoMIV	GCCGGC	1 cut(s)	680
NlaIII	CATG	2 cut(s)	180, 617
NlaIV	GGNNCC	2 cut(s)	182, 365
NmuCI	GTSAC	1 cut(s)	307
NspV	TTCGAA	1 cut(s)	350
PaeR7I	CTCGAG	1 cut(s)	135
PcsI	WCGNNNNNNNCGW	1 cut(s)	367
PdiI	GCCGGC	1 cut(s)	682
PfeI	GAWTC	1 cut(s)	438
PkrI	GCNGC	1 cut(s)	124
PsiI	TTATAA	1 cut(s)	407
PspN4I	GGNNCC	2 cut(s)	182, 365
PspPI	GGNCC	3 cut(s)	180, 263, 315
RsaI	GTAC	2 cut(s)	260, 365
RsaNI	GTAC	2 cut(s)	259, 364
SatI	GCNGC	1 cut(s)	123
Sau3AI	GATC	2 cut(s)	232, 592
Sau96I	GGNCC	3 cut(s)	180, 263, 315
ScrFI	CCNGG	1 cut(s)	52
SetI	ASST	4 cut(s)	142, 495, 504, 546
SfaNI	GCATC	5 cut(s)	98, 289, 398, 585, 651
Sfr274I	CTCGAG	1 cut(s)	135
SfuI	TTCGAA	1 cut(s)	350
SinI	GGWCC	1 cut(s)	180
SlaI	CTCGAG	1 cut(s)	135
SmlI	CTYRAG	2 cut(s)	58, 135
SmoI	CTYRAG	2 cut(s)	58, 135
Sse9I	AATT	7 cut(s)	66, 228, 239, 278, 325, 398, 408
SsiI	CCGC	2 cut(s)	471, 707
SspI	AATATT	1 cut(s)	338
SspMI	CTAG	2 cut(s)	312, 374
StyD4I	CCNGG	1 cut(s)	50
StyI	CCWWGG	3 cut(s)	393, 502, 627
TaaI	ACNGT	3 cut(s)	15, 113, 363
TaqI	TCGA	3 cut(s)	136, 350, 645
TasI	AATT	7 cut(s)	66, 228, 239, 278, 325, 398, 408
TfiI	GAWTC	1 cut(s)	438
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	1 cut(s)	122
Tsp45I	GTSAC	1 cut(s)	307
TspGWI	ACGGA	1 cut(s)	702
VpaK11BI	GGWCC	1 cut(s)	180
XapI	RAATTY	1 cut(s)	278
XhoI	CTCGAG	1 cut(s)	135
XspI	CTAG	2 cut(s)	312, 374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.