Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000142

Physical Location & Seq

Genomic Coordinates Reverse (-)

12541411 .. 12542681

Gene Structure 1271 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006996

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGATGGCAGCGGTGCCCCTCTTACTTATAGAGCTGAAAGATTGGTTACTCTTGGTCCCGAGCCAATTTGTTTTGTGTCCAGTTCCTTCACAAGGACAAGGATAGGATCCTTGTATATGACTTTTGATGGTGAAGTCGTTTACCTAGCGAAAGATTGTGCGACGAAGGAGTTGTTCATGATTATCCATCGGGTTCATTCTGGTCTCGAGCTTAATCCAACAATTCCTTGGGAGACGATCACCGGCGGTAATGCGGCCATTCCCTACACGACAAAAGGATTTCGAGTGTTCAAGCTTGAATGTGATCCTTATCCTCAATGGGTAGAGGTTTTCGACCTTGGTGATCGGATACTGTTTGTCAGTAGGCGCTGGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010468 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030684 GO:0030686 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070545 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904 GO:2000232

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT_2 Pescadillo_N

Protein Analysis

126

Amino Acids

14.14

Weight (kDa)

6.09

Isoelectric Point (pI)

33.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	55 - 123	3.1e-06	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000142)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica	MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica	Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis	pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis	RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata	RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora	Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa	Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha	Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana	Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	14
AciI	CCGC	3 cut(s)	12, 246, 254
AclWI	GGATC	3 cut(s)	102, 115, 299
AcoI	YGGCCR	1 cut(s)	255
AfiI	CCNNNNNNNGG	1 cut(s)	93
AgsI	TTSAA	2 cut(s)	292, 299
AluBI	AGCT	3 cut(s)	35, 211, 295
AluI	AGCT	3 cut(s)	35, 211, 295
Alw26I	GTCTC	2 cut(s)	209, 227
AlwI	GGATC	3 cut(s)	102, 115, 299
Ama87I	CYCGRG	2 cut(s)	59, 206
AoxI	GGCC	1 cut(s)	255
ApeKI	GCWGC	1 cut(s)	9
AspLEI	GCGC	1 cut(s)	369
AspS9I	GGNCC	1 cut(s)	56
AsuHPI	GGTGA	3 cut(s)	143, 232, 353
AvaI	CYCGRG	2 cut(s)	59, 206
AvaII	GGWCC	1 cut(s)	56
BaeGI	GKGCMC	1 cut(s)	19
BamHI	GGATCC	1 cut(s)	107
BanI	GGYRCC	1 cut(s)	14
BbvI	GCAGC	1 cut(s)	21
BccI	CCATC	2 cut(s)	122, 195
BciVI	GTATCC	1 cut(s)	342
BcoDI	GTCTC	2 cut(s)	209, 227
BfaI	CTAG	1 cut(s)	146
BfoI	RGCGCY	1 cut(s)	370
BfuI	GTATCC	1 cut(s)	342
BisI	GCNGC	2 cut(s)	10, 255
BlsI	GCNGC	2 cut(s)	11, 256
Bme18I	GGWCC	1 cut(s)	56
BmeT110I	CYCGRG	2 cut(s)	59, 206
BmgT120I	GGNCC	1 cut(s)	56
BmiI	GGNNCC	3 cut(s)	16, 58, 109
BsaBI	GATNNNNATC	1 cut(s)	309
BsaI	GGTCTC	1 cut(s)	209
BsaJI	CCNNGG	2 cut(s)	227, 337
Bsc4I	CCNNNNNNNGG	1 cut(s)	93
Bse118I	RCCGGY	1 cut(s)	242
Bse1I	ACTGG	1 cut(s)	81
Bse8I	GATNNNNATC	1 cut(s)	309
BseDI	CCNNGG	2 cut(s)	227, 337
BseGI	GGATG	1 cut(s)	10
BseJI	GATNNNNATC	1 cut(s)	309
BseLI	CCNNNNNNNGG	1 cut(s)	93
BseNI	ACTGG	1 cut(s)	81
BseSI	GKGCMC	1 cut(s)	19
BseXI	GCAGC	1 cut(s)	21
BseYI	CCCAGC	1 cut(s)	369
BshFI	GGCC	1 cut(s)	257
BshNI	GGYRCC	1 cut(s)	14
BsiHKCI	CYCGRG	2 cut(s)	59, 206
BsiSI	CCGG	1 cut(s)	243
BslFI	GGGAC	1 cut(s)	42
BslI	CCNNNNNNNGG	1 cut(s)	93
BsmAI	GTCTC	2 cut(s)	209, 227
BsmBI	CGTCTC	1 cut(s)	227
BsmFI	GGGAC	1 cut(s)	42
BsnI	GGCC	1 cut(s)	257
Bso31I	GGTCTC	1 cut(s)	209
BsoBI	CYCGRG	2 cut(s)	59, 206
Bsp1286I	GDGCHC	1 cut(s)	19
Bsp143I	GATC	4 cut(s)	107, 237, 304, 343
BspACI	CCGC	3 cut(s)	12, 246, 254
BspANI	GGCC	1 cut(s)	257
BspHI	TCATGA	1 cut(s)	177
BspLI	GGNNCC	3 cut(s)	16, 58, 109
BspPI	GGATC	3 cut(s)	102, 115, 299
BspT107I	GGYRCC	1 cut(s)	14
BspTNI	GGTCTC	1 cut(s)	209
BsrFI	RCCGGY	1 cut(s)	242
BsrI	ACTGG	1 cut(s)	81
BssAI	RCCGGY	1 cut(s)	242
BssECI	CCNNGG	2 cut(s)	227, 337
BssMI	GATC	4 cut(s)	107, 237, 304, 343
BssT1I	CCWWGG	2 cut(s)	227, 337
Bst4CI	ACNGT	1 cut(s)	354
BstENI	CCTNNNNNAGG	1 cut(s)	91
BstF5I	GGATG	1 cut(s)	10
BstH2I	RGCGCY	1 cut(s)	370
BstHHI	GCGC	1 cut(s)	369
BstKTI	GATC	4 cut(s)	110, 240, 307, 346
BstMAI	GTCTC	2 cut(s)	209, 227
BstMBI	GATC	4 cut(s)	107, 237, 304, 343
BstSLI	GKGCMC	1 cut(s)	19
BstV1I	GCAGC	1 cut(s)	21
BstX2I	RGATCY	1 cut(s)	107
BstYI	RGATCY	1 cut(s)	107
BsuI	GTATCC	1 cut(s)	342
BsuRI	GGCC	1 cut(s)	257
BtsCI	GGATG	1 cut(s)	10
CciI	TCATGA	1 cut(s)	177
CfoI	GCGC	1 cut(s)	369
Cfr10I	RCCGGY	1 cut(s)	242
Cfr13I	GGNCC	1 cut(s)	56
CviAII	CATG	1 cut(s)	178
CviJI	RGCY	5 cut(s)	35, 64, 211, 257, 295
CviKI_1	RGCY	5 cut(s)	35, 64, 211, 257, 295
DpnI	GATC	4 cut(s)	109, 239, 306, 345
DpnII	GATC	4 cut(s)	107, 237, 304, 343
EaeI	YGGCCR	1 cut(s)	255
Eco130I	CCWWGG	2 cut(s)	227, 337
Eco31I	GGTCTC	1 cut(s)	209
Eco47I	GGWCC	1 cut(s)	56
Eco88I	CYCGRG	2 cut(s)	59, 206
EcoNI	CCTNNNNNAGG	1 cut(s)	91
EcoT14I	CCWWGG	2 cut(s)	227, 337
ErhI	CCWWGG	2 cut(s)	227, 337
Esp3I	CGTCTC	1 cut(s)	227
FaeI	CATG	1 cut(s)	181
FaiI	YATR	4 cut(s)	30, 117, 119, 179
FaqI	GGGAC	1 cut(s)	42
FatI	CATG	1 cut(s)	177
Fnu4HI	GCNGC	2 cut(s)	10, 255
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	2 cut(s)	10, 255
FspBI	CTAG	1 cut(s)	146
GlaI	GCGC	1 cut(s)	368
GluI	GCNGC	2 cut(s)	10, 255
GsaI	CCCAGC	1 cut(s)	373
HaeII	RGCGCY	1 cut(s)	370
HaeIII	GGCC	1 cut(s)	257
HapII	CCGG	1 cut(s)	243
HhaI	GCGC	1 cut(s)	369
Hin1II	CATG	1 cut(s)	181
Hin6I	GCGC	1 cut(s)	367
HinP1I	GCGC	1 cut(s)	367
HindIII	AAGCTT	1 cut(s)	293
HpaII	CCGG	1 cut(s)	243
HphI	GGTGA	3 cut(s)	143, 232, 353
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	1 cut(s)	348
Hpy188III	TCNNGA	3 cut(s)	59, 178, 206
Hpy8I	GTNNAC	1 cut(s)	142
Hpy99I	CGWCG	1 cut(s)	166
HpyAV	CCTTC	2 cut(s)	97, 160
HpyCH4III	ACNGT	1 cut(s)	354
Hsp92II	CATG	1 cut(s)	181
HspAI	GCGC	1 cut(s)	367
Kzo9I	GATC	4 cut(s)	107, 237, 304, 343
LpnPI	CCDG	4 cut(s)	94, 186, 256, 355
Lsp1109I	GCAGC	1 cut(s)	21
MaeI	CTAG	1 cut(s)	146
MaeIII	GTNAC	1 cut(s)	46
MalI	GATC	4 cut(s)	109, 239, 306, 345
MboI	GATC	4 cut(s)	107, 237, 304, 343
MflI	RGATCY	1 cut(s)	107
MhlI	GDGCHC	1 cut(s)	19
MluCI	AATT	2 cut(s)	66, 222
MmeI	TCCRAC	1 cut(s)	242
MnlI	CCTC	3 cut(s)	30, 319, 324
MseI	TTAA	1 cut(s)	213
MspA1I	CMGCKG	1 cut(s)	12
MspI	CCGG	1 cut(s)	243
NdeII	GATC	4 cut(s)	107, 237, 304, 343
NlaIII	CATG	1 cut(s)	181
NlaIV	GGNNCC	3 cut(s)	16, 58, 109
PaeR7I	CTCGAG	1 cut(s)	206
PagI	TCATGA	1 cut(s)	177
PkrI	GCNGC	2 cut(s)	11, 256
PspFI	CCCAGC	1 cut(s)	369
PspN4I	GGNNCC	3 cut(s)	16, 58, 109
PspPI	GGNCC	1 cut(s)	56
PsuI	RGATCY	1 cut(s)	107
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	2 cut(s)	10, 255
Sau3AI	GATC	4 cut(s)	107, 237, 304, 343
Sau96I	GGNCC	1 cut(s)	56
SduI	GDGCHC	1 cut(s)	19
SetI	ASST	6 cut(s)	37, 147, 213, 297, 330, 339
Sfr274I	CTCGAG	1 cut(s)	206
SgrAI	CRCCGGYG	1 cut(s)	242
SinI	GGWCC	1 cut(s)	56
SlaI	CTCGAG	1 cut(s)	206
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	2 cut(s)	66, 222
SsiI	CCGC	3 cut(s)	12, 246, 254
SspMI	CTAG	1 cut(s)	146
StyI	CCWWGG	2 cut(s)	227, 337
TaaI	ACNGT	1 cut(s)	354
TaqI	TCGA	3 cut(s)	207, 283, 333
TasI	AATT	2 cut(s)	66, 222
TauI	GCSGC	1 cut(s)	257
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TseI	GCWGC	1 cut(s)	9
TspDTI	ATGAA	2 cut(s)	166, 185
VpaK11BI	GGWCC	1 cut(s)	56
XagI	CCTNNNNNAGG	1 cut(s)	91
XcmI	CCANNNNNNNNNTGG	1 cut(s)	225
XhoI	CTCGAG	1 cut(s)	206
XspI	CTAG	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.