Rmu_sc0020961.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020961.1
OG0000142
Physical Location & Seq
Reverse (-)
2407 .. 2751
345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020961.1_g000002.1.cds

Sequence Viewer

Length: 345 bp
atggagggcaagactgatgataatccatcctgcgagggggttactgaccttggtgatcgaatattgtttctgagcaagacaagcaataaggtcatcaatgacaagacacttgggaaaaactgcatctattttgctttcaatattacagagggtttttgggtgtattccttgacggatctgagcttcaaaggggttaacttgctcaaggattcctcgtcagtcgtctccaagcgctcgaactctttggctcacaccccatccgtggtagctgtaggtacaattcttgtacattcgtattggcattcccatacaaaactatgtctctttactgatcctggagaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295

Protein Analysis

114

Amino Acids

12.56

Weight (kDa)

6.4

Isoelectric Point (pI)

27.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000142)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 183, 326
AfaI GTAC 2 cut(s) 277, 288
AfeI AGCGCT 1 cut(s) 233
AfiI CCNNNNNNNGG 2 cut(s) 36, 262
AgsI TTSAA 2 cut(s) 139, 187
AjnI CCWGG 1 cut(s) 334
AluBI AGCT 2 cut(s) 183, 269
AluI AGCT 2 cut(s) 183, 269
Alw26I GTCTC 2 cut(s) 229, 326
AlwI GGATC 2 cut(s) 183, 326
Aor51HI AGCGCT 1 cut(s) 233
AspLEI GCGC 1 cut(s) 234
AsuHPI GGTGA 1 cut(s) 65
BccI CCATC 2 cut(s) 34, 265
BciT130I CCWGG 1 cut(s) 336
BcoDI GTCTC 2 cut(s) 229, 326
BfmI CTRYAG 1 cut(s) 270
BfoI RGCGCY 1 cut(s) 235
Bme1390I CCNGG 1 cut(s) 336
BmrFI CCNGG 1 cut(s) 336
BmsI GCATC 1 cut(s) 132
BpuEI CTTGAG 1 cut(s) 188
BsaBI GATNNNNATC 1 cut(s) 21
BsaJI CCNNGG 2 cut(s) 49, 261
Bsc4I CCNNNNNNNGG 2 cut(s) 36, 262
Bse8I GATNNNNATC 1 cut(s) 21
BseBI CCWGG 1 cut(s) 336
BseDI CCNNGG 2 cut(s) 49, 261
BseGI GGATG 2 cut(s) 26, 257
BseJI GATNNNNATC 1 cut(s) 21
BseLI CCNNNNNNNGG 2 cut(s) 36, 262
BseMII CTCAG 2 cut(s) 62, 170
BslI CCNNNNNNNGG 2 cut(s) 36, 262
BsmAI GTCTC 2 cut(s) 229, 326
BsmBI CGTCTC 1 cut(s) 229
BsmI GAATGC 1 cut(s) 301
Bsp1407I TGTACA 1 cut(s) 286
Bsp143I GATC 3 cut(s) 55, 175, 331
BspCNI CTCAG 2 cut(s) 63, 171
BspPI GGATC 2 cut(s) 183, 326
BsrGI TGTACA 1 cut(s) 286
BssECI CCNNGG 2 cut(s) 49, 261
BssMI GATC 3 cut(s) 55, 175, 331
BssT1I CCWWGG 1 cut(s) 49
Bst2UI CCWGG 1 cut(s) 336
BstAUI TGTACA 1 cut(s) 286
BstDEI CTNAG 2 cut(s) 71, 179
BstDSI CCRYGG 1 cut(s) 261
BstF5I GGATG 2 cut(s) 26, 257
BstH2I RGCGCY 1 cut(s) 235
BstHHI GCGC 1 cut(s) 234
BstKTI GATC 3 cut(s) 58, 178, 334
BstMAI GTCTC 2 cut(s) 229, 326
BstMBI GATC 3 cut(s) 55, 175, 331
BstMWI GCNNNNNNNGC 1 cut(s) 81
BstNI CCWGG 1 cut(s) 336
BstSCI CCNGG 1 cut(s) 334
BstSFI CTRYAG 1 cut(s) 270
BstX2I RGATCY 1 cut(s) 175
BstYI RGATCY 1 cut(s) 175
BtgI CCRYGG 1 cut(s) 261
BtsCI GGATG 2 cut(s) 26, 257
CfoI GCGC 1 cut(s) 234
Csp6I GTAC 2 cut(s) 276, 287
CviJI RGCY 3 cut(s) 183, 248, 269
CviKI_1 RGCY 3 cut(s) 183, 248, 269
CviQI GTAC 2 cut(s) 276, 287
DdeI CTNAG 2 cut(s) 71, 179
DpnI GATC 3 cut(s) 57, 177, 333
DpnII GATC 3 cut(s) 55, 175, 331
Eco130I CCWWGG 1 cut(s) 49
Eco47III AGCGCT 1 cut(s) 233
EcoRII CCWGG 1 cut(s) 334
EcoT14I CCWWGG 1 cut(s) 49
ErhI CCWWGG 1 cut(s) 49
Esp3I CGTCTC 1 cut(s) 229
FaiI YATR 2 cut(s) 309, 319
FokI GGATG 2 cut(s) 13, 244
GlaI GCGC 1 cut(s) 233
HaeII RGCGCY 1 cut(s) 235
HhaI GCGC 1 cut(s) 234
Hin6I GCGC 1 cut(s) 232
HinP1I GCGC 1 cut(s) 232
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HinfI GANTC 1 cut(s) 209
HpaI GTTAAC 1 cut(s) 196
HphI GGTGA 1 cut(s) 65
Hpy166II GTNNAC 1 cut(s) 196
Hpy188I TCNGA 2 cut(s) 72, 180
Hpy8I GTNNAC 1 cut(s) 196
HpyCH4V TGCA 1 cut(s) 123
HpyF10VI GCNNNNNNNGC 1 cut(s) 81
HpyF3I CTNAG 2 cut(s) 71, 179
HspAI GCGC 1 cut(s) 232
KspAI GTTAAC 1 cut(s) 196
Kzo9I GATC 3 cut(s) 55, 175, 331
LpnPI CCDG 2 cut(s) 43, 321
LweI GCATC 1 cut(s) 132
MaeIII GTNAC 1 cut(s) 40
MalI GATC 3 cut(s) 57, 177, 333
MboI GATC 3 cut(s) 55, 175, 331
MflI RGATCY 1 cut(s) 175
MluCI AATT 1 cut(s) 279
MnlI CCTC 3 cut(s) 28, 142, 223
MseI TTAA 1 cut(s) 195
MspR9I CCNGG 1 cut(s) 336
Mva1269I GAATGC 1 cut(s) 301
MvaI CCWGG 1 cut(s) 336
MwoI GCNNNNNNNGC 1 cut(s) 81
NdeII GATC 3 cut(s) 55, 175, 331
PctI GAATGC 1 cut(s) 301
PfeI GAWTC 1 cut(s) 209
PfoI TCCNGGA 1 cut(s) 334
Psp6I CCWGG 1 cut(s) 334
PspGI CCWGG 1 cut(s) 334
PsuI RGATCY 1 cut(s) 175
RsaI GTAC 2 cut(s) 277, 288
RsaNI GTAC 2 cut(s) 276, 287
SaqAI TTAA 1 cut(s) 195
Sau3AI GATC 3 cut(s) 55, 175, 331
ScrFI CCNGG 1 cut(s) 336
SetI ASST 5 cut(s) 51, 93, 185, 271, 277
SfaNI GCATC 1 cut(s) 132
SfcI CTRYAG 1 cut(s) 270
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 1 cut(s) 279
SspI AATATT 2 cut(s) 63, 142
StyD4I CCNGG 1 cut(s) 334
StyI CCWWGG 1 cut(s) 49
TaqI TCGA 2 cut(s) 58, 236
TasI AATT 1 cut(s) 279
TatI WGTACW 1 cut(s) 286
TfiI GAWTC 1 cut(s) 209
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TspGWI ACGGA 2 cut(s) 188, 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.