Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 1107 |
| AccB1I | GGYRCC | 3 cut(s) | 633, 1043, 1107 |
| AccII | CGCG | 1 cut(s) | 1416 |
| AciI | CCGC | 3 cut(s) | 202, 723, 1615 |
| AclI | AACGTT | 1 cut(s) | 215 |
| AclWI | GGATC | 4 cut(s) | 684, 1175, 1328, 1334 |
| AcoI | YGGCCR | 1 cut(s) | 858 |
| AcsI | RAATTY | 4 cut(s) | 82, 174, 1347, 1535 |
| AcuI | CTGAAG | 1 cut(s) | 522 |
| AcyI | GRCGYC | 1 cut(s) | 634 |
| AfaI | GTAC | 3 cut(s) | 551, 1109, 1142 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1122 |
| AflII | CTTAAG | 1 cut(s) | 1433 |
| AflIII | ACRYGT | 2 cut(s) | 880, 937 |
| AgsI | TTSAA | 6 cut(s) | 182, 520, 712, 1318, 1472, 1621 |
| AjnI | CCWGG | 3 cut(s) | 325, 787, 1580 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1184, 1216, 1521, 1553 |
| AluBI | AGCT | 6 cut(s) | 241, 463, 834, 902, 1237, 1321 |
| AluI | AGCT | 6 cut(s) | 241, 463, 834, 902, 1237, 1321 |
| AlwI | GGATC | 4 cut(s) | 684, 1175, 1328, 1334 |
| Ama87I | CYCGRG | 4 cut(s) | 259, 729, 1088, 1608 |
| AoxI | GGCC | 3 cut(s) | 858, 1091, 1583 |
| ApeKI | GCWGC | 4 cut(s) | 60, 231, 774, 992 |
| ApoI | RAATTY | 4 cut(s) | 82, 174, 1347, 1535 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 529, 561 |
| Asp718I | GGTACC | 1 cut(s) | 1107 |
| AspLEI | GCGC | 4 cut(s) | 636, 1416, 1418, 1462 |
| AspS9I | GGNCC | 4 cut(s) | 537, 785, 1085, 1091 |
| AsuC2I | CCSGG | 4 cut(s) | 140, 638, 1089, 1090 |
| AsuHPI | GGTGA | 3 cut(s) | 365, 1344, 1382 |
| AsuII | TTCGAA | 1 cut(s) | 434 |
| AvaI | CYCGRG | 4 cut(s) | 259, 729, 1088, 1608 |
| AvaII | GGWCC | 3 cut(s) | 537, 785, 1085 |
| BaeGI | GKGCMC | 1 cut(s) | 1048 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1116, 1149 |
| BalI | TGGCCA | 1 cut(s) | 860 |
| BanI | GGYRCC | 3 cut(s) | 633, 1043, 1107 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 119, 151 |
| BbsI | GAAGAC | 1 cut(s) | 510 |
| BbvCI | CCTCAGC | 1 cut(s) | 459 |
| BbvI | GCAGC | 4 cut(s) | 47, 218, 761, 979 |
| BccI | CCATC | 4 cut(s) | 597, 751, 971, 1034 |
| BceAI | ACGGC | 2 cut(s) | 371, 381 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 375, 409 |
| BciT130I | CCWGG | 3 cut(s) | 327, 789, 1582 |
| BclI | TGATCA | 1 cut(s) | 252 |
| BcnI | CCSGG | 4 cut(s) | 140, 638, 1089, 1090 |
| BfaI | CTAG | 2 cut(s) | 1172, 1227 |
| BfmI | CTRYAG | 1 cut(s) | 61 |
| BfoI | RGCGCY | 1 cut(s) | 637 |
| BfrI | CTTAAG | 1 cut(s) | 1433 |
| BisI | GCNGC | 4 cut(s) | 61, 232, 775, 993 |
| BlsI | GCNGC | 4 cut(s) | 62, 233, 776, 994 |
| Bme1390I | CCNGG | 7 cut(s) | 140, 327, 638, 789, 1089, 1090, 1582 |
| Bme18I | GGWCC | 3 cut(s) | 537, 785, 1085 |
| BmeT110I | CYCGRG | 4 cut(s) | 259, 729, 1088, 1608 |
| BmgT120I | GGNCC | 4 cut(s) | 537, 785, 1085, 1091 |
| BmiI | GGNNCC | 5 cut(s) | 359, 635, 1045, 1087, 1109 |
| BmrFI | CCNGG | 7 cut(s) | 140, 327, 638, 789, 1089, 1090, 1582 |
| BmsI | GCATC | 2 cut(s) | 879, 1417 |
| BpiI | GAAGAC | 1 cut(s) | 510 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 723, 755 |
| Bpu10I | CCTNAGC | 1 cut(s) | 459 |
| Bpu14I | TTCGAA | 1 cut(s) | 434 |
| BpuEI | CTTGAG | 3 cut(s) | 144, 820, 1577 |
| BpuMI | CCSGG | 4 cut(s) | 140, 638, 1089, 1090 |
| Bsa29I | ATCGAT | 1 cut(s) | 907 |
| BsaAI | YACGTR | 1 cut(s) | 1144 |
| BsaBI | GATNNNNATC | 2 cut(s) | 254, 1338 |
| BsaHI | GRCGYC | 1 cut(s) | 634 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1122 |
| Bse1I | ACTGG | 2 cut(s) | 36, 1631 |
| Bse3DI | GCAATG | 1 cut(s) | 446 |
| Bse8I | GATNNNNATC | 2 cut(s) | 254, 1338 |
| BseBI | CCWGG | 3 cut(s) | 327, 789, 1582 |
| BseCI | ATCGAT | 1 cut(s) | 907 |
| BseGI | GGATG | 4 cut(s) | 608, 982, 1026, 1548 |
| BseJI | GATNNNNATC | 2 cut(s) | 254, 1338 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1122 |
| BseMI | GCAATG | 1 cut(s) | 446 |
| BseMII | CTCAG | 4 cut(s) | 184, 256, 473, 538 |
| BseNI | ACTGG | 2 cut(s) | 36, 1631 |
| BsePI | GCGCGC | 1 cut(s) | 1414 |
| BseRI | GAGGAG | 1 cut(s) | 447 |
| BseSI | GKGCMC | 1 cut(s) | 1048 |
| BseXI | GCAGC | 4 cut(s) | 47, 218, 761, 979 |
| Bsh1236I | CGCG | 1 cut(s) | 1416 |
| Bsh1285I | CGRYCG | 1 cut(s) | 911 |
| BshFI | GGCC | 3 cut(s) | 860, 1093, 1585 |
| BshNI | GGYRCC | 3 cut(s) | 633, 1043, 1107 |
| BshVI | ATCGAT | 1 cut(s) | 907 |
| BsiEI | CGRYCG | 1 cut(s) | 911 |
| BsiHKCI | CYCGRG | 4 cut(s) | 259, 729, 1088, 1608 |
| BsiSI | CCGG | 3 cut(s) | 139, 638, 1089 |
| BslFI | GGGAC | 1 cut(s) | 1071 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1122 |
| BsmFI | GGGAC | 1 cut(s) | 1071 |
| BsnI | GGCC | 3 cut(s) | 860, 1093, 1585 |
| BsoBI | CYCGRG | 4 cut(s) | 259, 729, 1088, 1608 |
| Bsp119I | TTCGAA | 1 cut(s) | 434 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1048 |
| Bsp19I | CCATGG | 1 cut(s) | 467 |
| BspACI | CCGC | 3 cut(s) | 202, 723, 1615 |
| BspANI | GGCC | 3 cut(s) | 860, 1093, 1585 |
| BspCNI | CTCAG | 4 cut(s) | 183, 255, 472, 537 |
| BspDI | ATCGAT | 1 cut(s) | 907 |
| BspFNI | CGCG | 1 cut(s) | 1416 |
| BspLI | GGNNCC | 5 cut(s) | 359, 635, 1045, 1087, 1109 |
| BspMAI | CTGCAG | 1 cut(s) | 65 |
| BspPI | GGATC | 4 cut(s) | 684, 1175, 1328, 1334 |
| BspT104I | TTCGAA | 1 cut(s) | 434 |
| BspT107I | GGYRCC | 3 cut(s) | 633, 1043, 1107 |
| BspTI | CTTAAG | 1 cut(s) | 1433 |
| BsrDI | GCAATG | 1 cut(s) | 446 |
| BsrI | ACTGG | 2 cut(s) | 36, 1631 |
| BssHII | GCGCGC | 1 cut(s) | 1414 |
| BssNI | GRCGYC | 1 cut(s) | 634 |
| BssT1I | CCWWGG | 7 cut(s) | 401, 467, 656, 1191, 1253, 1366, 1551 |
| Bst2UI | CCWGG | 3 cut(s) | 327, 789, 1582 |
| Bst4CI | ACNGT | 2 cut(s) | 756, 1601 |
| BstACI | GRCGYC | 1 cut(s) | 634 |
| BstAFI | CTTAAG | 1 cut(s) | 1433 |
| BstBAI | YACGTR | 1 cut(s) | 1144 |
| BstBI | TTCGAA | 1 cut(s) | 434 |
| BstC8I | GCNNGC | 5 cut(s) | 862, 896, 900, 1270, 1416 |
| BstDEI | CTNAG | 5 cut(s) | 170, 242, 459, 524, 1560 |
| BstDSI | CCRYGG | 1 cut(s) | 467 |
| BstEII | GGTNACC | 1 cut(s) | 1075 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1120 |
| BstF5I | GGATG | 4 cut(s) | 608, 982, 1026, 1548 |
| BstFNI | CGCG | 1 cut(s) | 1416 |
| BstH2I | RGCGCY | 1 cut(s) | 637 |
| BstHHI | GCGC | 4 cut(s) | 636, 1416, 1418, 1462 |
| BstMCI | CGRYCG | 1 cut(s) | 911 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 41, 164, 469, 846 |
| BstNI | CCWGG | 3 cut(s) | 327, 789, 1582 |
| BstNSI | RCATGY | 3 cut(s) | 884, 921, 941 |
| BstPI | GGTNACC | 1 cut(s) | 1075 |
| BstSCI | CCNGG | 7 cut(s) | 138, 325, 636, 787, 1087, 1088, 1580 |
| BstSFI | CTRYAG | 1 cut(s) | 61 |
| BstSLI | GKGCMC | 1 cut(s) | 1048 |
| BstUI | CGCG | 1 cut(s) | 1416 |
| BstV1I | GCAGC | 4 cut(s) | 47, 218, 761, 979 |
| BstV2I | GAAGAC | 1 cut(s) | 510 |
| Bsu15I | ATCGAT | 1 cut(s) | 907 |
| BsuRI | GGCC | 3 cut(s) | 860, 1093, 1585 |
| BsuTUI | ATCGAT | 1 cut(s) | 907 |
| BtgI | CCRYGG | 1 cut(s) | 467 |
| BtgZI | GCGATG | 1 cut(s) | 1249 |
| BtsCI | GGATG | 4 cut(s) | 608, 982, 1026, 1548 |
| BtsI | GCAGTG | 1 cut(s) | 508 |
| BtsIMutI | CAGTG | 2 cut(s) | 508, 532 |
| Cac8I | GCNNGC | 5 cut(s) | 862, 896, 900, 1270, 1416 |
| CfoI | GCGC | 4 cut(s) | 636, 1416, 1418, 1462 |
| Cfr13I | GGNCC | 4 cut(s) | 537, 785, 1085, 1091 |
| Cfr9I | CCCGGG | 1 cut(s) | 1088 |
| ClaI | ATCGAT | 1 cut(s) | 907 |
| CseI | GACGC | 1 cut(s) | 1509 |
| Csp6I | GTAC | 3 cut(s) | 550, 1108, 1141 |
| CviQI | GTAC | 3 cut(s) | 550, 1108, 1141 |
| DdeI | CTNAG | 5 cut(s) | 170, 242, 459, 524, 1560 |
| DinI | GGCGCC | 1 cut(s) | 635 |
| DraI | TTTAAA | 1 cut(s) | 351 |
| EaeI | YGGCCR | 1 cut(s) | 858 |
| Eco130I | CCWWGG | 7 cut(s) | 401, 467, 656, 1191, 1253, 1366, 1551 |
| Eco47I | GGWCC | 3 cut(s) | 537, 785, 1085 |
| Eco57I | CTGAAG | 1 cut(s) | 522 |
| Eco88I | CYCGRG | 4 cut(s) | 259, 729, 1088, 1608 |
| Eco91I | GGTNACC | 1 cut(s) | 1075 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1120 |
| EcoO109I | RGGNCCY | 1 cut(s) | 537 |
| EcoO65I | GGTNACC | 1 cut(s) | 1075 |
| EcoRII | CCWGG | 3 cut(s) | 325, 787, 1580 |
| EcoT14I | CCWWGG | 7 cut(s) | 401, 467, 656, 1191, 1253, 1366, 1551 |
| EcoT22I | ATGCAT | 1 cut(s) | 923 |
| EgeI | GGCGCC | 1 cut(s) | 635 |
| EheI | GGCGCC | 1 cut(s) | 635 |
| ErhI | CCWWGG | 7 cut(s) | 401, 467, 656, 1191, 1253, 1366, 1551 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 360, 392, 1120, 1152 |
| FaqI | GGGAC | 1 cut(s) | 1071 |
| FbaI | TGATCA | 1 cut(s) | 252 |
| Fnu4HI | GCNGC | 4 cut(s) | 61, 232, 775, 993 |
| FokI | GGATG | 4 cut(s) | 615, 989, 1013, 1555 |
| Fsp4HI | GCNGC | 4 cut(s) | 61, 232, 775, 993 |
| FspBI | CTAG | 2 cut(s) | 1172, 1227 |
| GlaI | GCGC | 4 cut(s) | 635, 1415, 1417, 1461 |
| GluI | GCNGC | 4 cut(s) | 61, 232, 775, 993 |
| HaeII | RGCGCY | 1 cut(s) | 637 |
| HaeIII | GGCC | 3 cut(s) | 860, 1093, 1585 |
| HapII | CCGG | 3 cut(s) | 139, 638, 1089 |
| HgaI | GACGC | 1 cut(s) | 1509 |
| HhaI | GCGC | 4 cut(s) | 636, 1416, 1418, 1462 |
| Hin1I | GRCGYC | 1 cut(s) | 634 |
| Hin6I | GCGC | 4 cut(s) | 634, 1414, 1416, 1460 |
| HinP1I | GCGC | 4 cut(s) | 634, 1414, 1416, 1460 |
| HinfI | GANTC | 5 cut(s) | 290, 712, 926, 1514, 1611 |
| HpaII | CCGG | 3 cut(s) | 139, 638, 1089 |
| HphI | GGTGA | 3 cut(s) | 365, 1344, 1382 |
| Hpy166II | GTNNAC | 4 cut(s) | 759, 915, 1529, 1641 |
| Hpy188I | TCNGA | 5 cut(s) | 173, 245, 295, 717, 1377 |
| Hpy8I | GTNNAC | 4 cut(s) | 759, 915, 1529, 1641 |
| Hpy99I | CGWCG | 1 cut(s) | 1502 |
| HpyAV | CCTTC | 3 cut(s) | 117, 386, 772 |
| HpyCH4III | ACNGT | 2 cut(s) | 756, 1601 |
| HpyCH4IV | ACGT | 2 cut(s) | 215, 1143 |
| HpyCH4V | TGCA | 8 cut(s) | 63, 626, 673, 870, 894, 921, 995, 1404 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 41, 164, 469, 846 |
| HpyF3I | CTNAG | 5 cut(s) | 170, 242, 459, 524, 1560 |
| HpySE526I | ACGT | 2 cut(s) | 215, 1143 |
| Hsp92I | GRCGYC | 1 cut(s) | 634 |
| HspAI | GCGC | 4 cut(s) | 634, 1414, 1416, 1460 |
| KasI | GGCGCC | 1 cut(s) | 633 |
| KpnI | GGTACC | 1 cut(s) | 1111 |
| Ksp22I | TGATCA | 1 cut(s) | 252 |
| LmnI | GCTCC | 2 cut(s) | 363, 744 |
| Lsp1109I | GCAGC | 4 cut(s) | 47, 218, 761, 979 |
| LweI | GCATC | 2 cut(s) | 879, 1417 |
| MaeI | CTAG | 2 cut(s) | 1172, 1227 |
| MaeII | ACGT | 2 cut(s) | 215, 1143 |
| MaeIII | GTNAC | 4 cut(s) | 216, 1075, 1144, 1229 |
| MboII | GAAGA | 4 cut(s) | 139, 308, 515, 1596 |
| MfeI | CAATTG | 1 cut(s) | 594 |
| MhlI | GDGCHC | 1 cut(s) | 1048 |
| MlsI | TGGCCA | 1 cut(s) | 860 |
| MluNI | TGGCCA | 1 cut(s) | 860 |
| Mly113I | GGCGCC | 1 cut(s) | 634 |
| MlyI | GAGTC | 2 cut(s) | 935, 1620 |
| MmeI | TCCRAC | 2 cut(s) | 558, 1268 |
| Mox20I | TGGCCA | 1 cut(s) | 860 |
| Mph1103I | ATGCAT | 1 cut(s) | 923 |
| MscI | TGGCCA | 1 cut(s) | 860 |
| MseI | TTAA | 4 cut(s) | 102, 350, 1434, 1654 |
| MslI | CAYNNNNRTG | 3 cut(s) | 942, 1041, 1227 |
| Msp20I | TGGCCA | 1 cut(s) | 860 |
| MspA1I | CMGCKG | 1 cut(s) | 902 |
| MspCI | CTTAAG | 1 cut(s) | 1433 |
| MspI | CCGG | 3 cut(s) | 139, 638, 1089 |
| MspR9I | CCNGG | 7 cut(s) | 140, 327, 638, 789, 1089, 1090, 1582 |
| MunI | CAATTG | 1 cut(s) | 594 |
| MvaI | CCWGG | 3 cut(s) | 327, 789, 1582 |
| MvnI | CGCG | 1 cut(s) | 1416 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 41, 164, 469, 846 |
| NarI | GGCGCC | 1 cut(s) | 634 |
| NciI | CCSGG | 4 cut(s) | 140, 638, 1089, 1090 |
| NcoI | CCATGG | 1 cut(s) | 467 |
| NlaIV | GGNNCC | 5 cut(s) | 359, 635, 1045, 1087, 1109 |
| NmeAIII | GCCGAG | 1 cut(s) | 207 |
| NmuCI | GTSAC | 2 cut(s) | 1144, 1229 |
| NsiI | ATGCAT | 1 cut(s) | 923 |
| NspI | RCATGY | 3 cut(s) | 884, 921, 941 |
| NspV | TTCGAA | 1 cut(s) | 434 |
| PaeR7I | CTCGAG | 3 cut(s) | 259, 729, 1608 |
| PauI | GCGCGC | 1 cut(s) | 1414 |
| PciI | ACATGT | 2 cut(s) | 880, 937 |
| PfeI | GAWTC | 3 cut(s) | 290, 712, 1514 |
| PkrI | GCNGC | 4 cut(s) | 62, 233, 776, 994 |
| Ple19I | CGATCG | 1 cut(s) | 911 |
| PleI | GAGTC | 2 cut(s) | 934, 1619 |
| PluTI | GGCGCC | 1 cut(s) | 637 |
| PpsI | GAGTC | 2 cut(s) | 934, 1619 |
| Ppu21I | YACGTR | 1 cut(s) | 1144 |
| PpuMI | RGGWCCY | 1 cut(s) | 537 |
| PscI | ACATGT | 2 cut(s) | 880, 937 |
| Psp1406I | AACGTT | 1 cut(s) | 215 |
| Psp5II | RGGWCCY | 1 cut(s) | 537 |
| Psp6I | CCWGG | 3 cut(s) | 325, 787, 1580 |
| PspEI | GGTNACC | 1 cut(s) | 1075 |
| PspGI | CCWGG | 3 cut(s) | 325, 787, 1580 |
| PspN4I | GGNNCC | 5 cut(s) | 359, 635, 1045, 1087, 1109 |
| PspPI | GGNCC | 4 cut(s) | 537, 785, 1085, 1091 |
| PspPPI | RGGWCCY | 1 cut(s) | 537 |
| PspXI | VCTCGAGB | 1 cut(s) | 729 |
| PstI | CTGCAG | 1 cut(s) | 65 |
| PteI | GCGCGC | 1 cut(s) | 1414 |
| PvuI | CGATCG | 1 cut(s) | 911 |
| PvuII | CAGCTG | 1 cut(s) | 902 |
| RsaI | GTAC | 3 cut(s) | 551, 1109, 1142 |
| RsaNI | GTAC | 3 cut(s) | 550, 1108, 1141 |
| RseI | CAYNNNNRTG | 3 cut(s) | 942, 1041, 1227 |
| SaqAI | TTAA | 4 cut(s) | 102, 350, 1434, 1654 |
| SatI | GCNGC | 4 cut(s) | 61, 232, 775, 993 |
| Sau96I | GGNCC | 4 cut(s) | 537, 785, 1085, 1091 |
| SchI | GAGTC | 2 cut(s) | 935, 1620 |
| ScrFI | CCNGG | 7 cut(s) | 140, 327, 638, 789, 1089, 1090, 1582 |
| SduI | GDGCHC | 1 cut(s) | 1048 |
| SfaNI | GCATC | 2 cut(s) | 879, 1417 |
| SfcI | CTRYAG | 1 cut(s) | 61 |
| SfoI | GGCGCC | 1 cut(s) | 635 |
| Sfr274I | CTCGAG | 3 cut(s) | 259, 729, 1608 |
| SfuI | TTCGAA | 1 cut(s) | 434 |
| SinI | GGWCC | 3 cut(s) | 537, 785, 1085 |
| SlaI | CTCGAG | 3 cut(s) | 259, 729, 1608 |
| SmaI | CCCGGG | 1 cut(s) | 1090 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 942, 1041, 1227 |
| SmlI | CTYRAG | 7 cut(s) | 159, 259, 729, 835, 1433, 1592, 1608 |
| SmoI | CTYRAG | 7 cut(s) | 159, 259, 729, 835, 1433, 1592, 1608 |
| SsiI | CCGC | 3 cut(s) | 202, 723, 1615 |
| SspDI | GGCGCC | 1 cut(s) | 633 |
| SspI | AATATT | 3 cut(s) | 189, 845, 1285 |
| SspMI | CTAG | 2 cut(s) | 1172, 1227 |
| StyD4I | CCNGG | 7 cut(s) | 138, 325, 636, 787, 1087, 1088, 1580 |
| StyI | CCWWGG | 7 cut(s) | 401, 467, 656, 1191, 1253, 1366, 1551 |
| TaaI | ACNGT | 2 cut(s) | 756, 1601 |
| TaiI | ACGT | 2 cut(s) | 218, 1146 |
| TfiI | GAWTC | 3 cut(s) | 290, 712, 1514 |
| Tru1I | TTAA | 4 cut(s) | 102, 350, 1434, 1654 |
| Tru9I | TTAA | 4 cut(s) | 102, 350, 1434, 1654 |
| TscAI | CASTG | 2 cut(s) | 515, 532 |
| TseFI | GTSAC | 2 cut(s) | 1144, 1229 |
| TseI | GCWGC | 4 cut(s) | 60, 231, 774, 992 |
| Tsp45I | GTSAC | 2 cut(s) | 1144, 1229 |
| TspDTI | ATGAA | 7 cut(s) | 106, 584, 601, 665, 932, 1192, 1211 |
| TspGWI | ACGGA | 2 cut(s) | 798, 891 |
| TspMI | CCCGGG | 1 cut(s) | 1088 |
| TspRI | CASTG | 2 cut(s) | 515, 532 |
| Vha464I | CTTAAG | 1 cut(s) | 1433 |
| VpaK11BI | GGWCC | 3 cut(s) | 537, 785, 1085 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1120 |
| XapI | RAATTY | 4 cut(s) | 82, 174, 1347, 1535 |
| XceI | RCATGY | 3 cut(s) | 884, 921, 941 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1037, 1251 |
| XhoI | CTCGAG | 3 cut(s) | 259, 729, 1608 |
| XmaI | CCCGGG | 1 cut(s) | 1088 |
| XspI | CTAG | 2 cut(s) | 1172, 1227 |
| Zsp2I | ATGCAT | 1 cut(s) | 923 |