RLG00000024608

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000142
Physical Location & Seq
Reverse (-)
37437264 .. 37438575
1312 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024608

Sequence Viewer

Length: 1023 bp
ATGTTCAATCTCGGTGTCAAGTTTAGTTTAATTATCTGTTACCTGGCTCCATCAGTGTGGATGATGTGGCGGTTAATCGCTGTGGACTGTGTTGAGTACTTGCTGTTGTTTGTGTGGTGTACACAATACTCTTGCTTTGTCCCAAGCGCAGACGGGAACTTACTGGCCGCAATCTCAGAGCGATGTCGATTAGAATTAGAAGTGGTCAGAAAATACTACTACTACTCTGATTCAAAGACAGAGGAGAGGTGGTCTAATGGTCTCCCACAAGAAATCTTGCTATTGATTTTGCAAAGGCTATGCATATCGGATTACCTTGTGTTTCCAAAAGTGTGTGTTTCTTGGCGAGCTGTTGTGGAGATGGGTATTGCTACCAAGAGTTGCCTTCCTGCTCCTCAACTTCCACGGCTTTTGCTCATCTCTCCTGCCCACCATTATATTAGTTCCTTGCACATTAAAAATCAAACTTGCTTTGTGAGTGATGGTGATCGGAAACTTGTTTCATTTGAATCATATGCCAGTGACATTTTATATTTCCTTAAGAAAGATCAGTCGTGGTTTTGGGGGATTTATTGTCTTGGTTCTACTGAGAGGCCTACTGATACATCATGGACCCTCATCGAGCAGGCTGAGGTTGAGGCTGCTGCTGCCGAGGGGAGGGAGGAGGAGGCTCTCAAATTTTATGATATAGAATTACTTGATGGGAAGTTATATGCTTATGCGGCAACAACTGCGTGGATGTCTAAGTTTTTAATTGCATTTGACATCATCCGATCAGACAACGGGAACGGTGGCCCTTACCTAGCAAAAGATTCTGCATCCAATGAGTTGTTTATGATTTTTCGTAAAATGTCTGATCCTGTTATTGCTGCGGAGGCTAATCGGGGCACTGCAGGATTTCGAGTTTTCAAGCTAGTGCCCAAGAGTAATTGTCCATGGTGGGCAGAGGAGGTTGTAGACCTTGGTGATCGGATATTGTTTCTCAGCTCGAAAAACAGAGTTTGTCTCTCCCAGCAGCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295

Protein Analysis

341

Amino Acids

38.84

Weight (kDa)

5.55

Isoelectric Point (pI)

49.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 88 - 120 2.2e-06 F-box domain
Beta-prop_KIB1-4 PF03478 186 - 339 5.1e-11 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000142)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 957
AciI CCGC 4 cut(s) 70, 168, 722, 872
AclWI GGATC 1 cut(s) 851
AcoI YGGCCR 1 cut(s) 165
AcsI RAATTY 1 cut(s) 677
AfaI GTAC 2 cut(s) 98, 121
AfiI CCNNNNNNNGG 1 cut(s) 657
AflII CTTAAG 1 cut(s) 539
AgsI TTSAA 4 cut(s) 7, 234, 509, 910
AjnI CCWGG 1 cut(s) 42
AluBI AGCT 3 cut(s) 350, 913, 987
AluI AGCT 3 cut(s) 350, 913, 987
Alw26I GTCTC 2 cut(s) 266, 1010
AlwI GGATC 1 cut(s) 851
AoxI GGCC 3 cut(s) 165, 593, 793
ApeKI GCWGC 5 cut(s) 641, 644, 647, 869, 1015
ApoI RAATTY 1 cut(s) 677
AspLEI GCGC 1 cut(s) 149
AspS9I GGNCC 2 cut(s) 612, 794
AsuHPI GGTGA 2 cut(s) 497, 977
AvaII GGWCC 1 cut(s) 612
BaeGI GKGCMC 2 cut(s) 890, 921
BbvCI CCTCAGC 1 cut(s) 630
BbvI GCAGC 4 cut(s) 628, 631, 634, 856
BccI CCATC 4 cut(s) 58, 355, 476, 695
BceAI ACGGC 1 cut(s) 422
BciT130I CCWGG 1 cut(s) 44
BcoDI GTCTC 2 cut(s) 266, 1010
BfaI CTAG 3 cut(s) 803, 914, 1021
BfmI CTRYAG 1 cut(s) 891
BfrI CTTAAG 1 cut(s) 539
BisI GCNGC 7 cut(s) 168, 642, 645, 648, 723, 870, 1016
BlsI GCNGC 7 cut(s) 169, 643, 646, 649, 724, 871, 1017
BmcAI AGTACT 1 cut(s) 98
Bme1390I CCNGG 1 cut(s) 44
Bme18I GGWCC 1 cut(s) 612
BmgT120I GGNCC 2 cut(s) 612, 794
BmiI GGNNCC 2 cut(s) 48, 614
BmrFI CCNGG 1 cut(s) 44
BmsI GCATC 1 cut(s) 827
BplI GAGNNNNNCTC 2 cut(s) 990, 1022
Bpu10I CCTNAGC 1 cut(s) 630
BsaBI GATNNNNATC 1 cut(s) 486
BsaI GGTCTC 1 cut(s) 266
BsaJI CCNNGG 4 cut(s) 404, 651, 935, 961
BsaXI ACNNNNNCTCC 2 cut(s) 236, 266
Bsc4I CCNNNNNNNGG 1 cut(s) 657
Bse1I ACTGG 2 cut(s) 168, 519
Bse8I GATNNNNATC 1 cut(s) 486
BseBI CCWGG 1 cut(s) 44
BseDI CCNNGG 4 cut(s) 404, 651, 935, 961
BseGI GGATG 4 cut(s) 66, 744, 768, 818
BseJI GATNNNNATC 1 cut(s) 486
BseLI CCNNNNNNNGG 1 cut(s) 657
BseMII CTCAG 4 cut(s) 189, 579, 621, 997
BseNI ACTGG 2 cut(s) 168, 519
BseRI GAGGAG 5 cut(s) 257, 384, 677, 680, 962
BseSI GKGCMC 2 cut(s) 890, 921
BseXI GCAGC 4 cut(s) 628, 631, 634, 856
BseYI CCCAGC 1 cut(s) 1011
BshFI GGCC 3 cut(s) 167, 595, 795
BslFI GGGAC 1 cut(s) 125
BslI CCNNNNNNNGG 1 cut(s) 657
BsmAI GTCTC 2 cut(s) 266, 1010
BsmFI GGGAC 1 cut(s) 125
BsnI GGCC 3 cut(s) 167, 595, 795
Bso31I GGTCTC 1 cut(s) 266
Bsp1286I GDGCHC 2 cut(s) 890, 921
Bsp1407I TGTACA 1 cut(s) 119
Bsp143I GATC 5 cut(s) 487, 547, 773, 856, 967
Bsp19I CCATGG 1 cut(s) 935
BspACI CCGC 4 cut(s) 70, 168, 722, 872
BspANI GGCC 3 cut(s) 167, 595, 795
BspCNI CTCAG 4 cut(s) 188, 580, 622, 996
BspLI GGNNCC 2 cut(s) 48, 614
BspMAI CTGCAG 1 cut(s) 895
BspPI GGATC 1 cut(s) 851
BspTI CTTAAG 1 cut(s) 539
BspTNI GGTCTC 1 cut(s) 266
BsrGI TGTACA 1 cut(s) 119
BsrI ACTGG 2 cut(s) 168, 519
BssECI CCNNGG 4 cut(s) 404, 651, 935, 961
BssMI GATC 5 cut(s) 487, 547, 773, 856, 967
BssT1I CCWWGG 2 cut(s) 935, 961
Bst2UI CCWGG 1 cut(s) 44
Bst4CI ACNGT 2 cut(s) 89, 791
BstAFI CTTAAG 1 cut(s) 539
BstAPI GCANNNNNTGC 1 cut(s) 731
BstAUI TGTACA 1 cut(s) 119
BstC8I GCNNGC 2 cut(s) 348, 627
BstDEI CTNAG 5 cut(s) 175, 588, 630, 744, 983
BstDSI CCRYGG 2 cut(s) 404, 935
BstF5I GGATG 4 cut(s) 66, 744, 768, 818
BstHHI GCGC 1 cut(s) 149
BstKTI GATC 5 cut(s) 490, 550, 776, 859, 970
BstMAI GTCTC 2 cut(s) 266, 1010
BstMBI GATC 5 cut(s) 487, 547, 773, 856, 967
BstMWI GCNNNNNNNGC 4 cut(s) 647, 722, 731, 875
BstNI CCWGG 1 cut(s) 44
BstSCI CCNGG 1 cut(s) 42
BstSFI CTRYAG 1 cut(s) 891
BstSLI GKGCMC 2 cut(s) 890, 921
BstV1I GCAGC 4 cut(s) 628, 631, 634, 856
BstXI CCANNNNNNTGG 1 cut(s) 57
BsuRI GGCC 3 cut(s) 167, 595, 795
BtgI CCRYGG 2 cut(s) 404, 935
BtgZI GCGATG 1 cut(s) 196
BtsCI GGATG 4 cut(s) 66, 744, 768, 818
BtsI GCAGTG 1 cut(s) 888
BtsIMutI CAGTG 3 cut(s) 60, 526, 888
Cac8I GCNNGC 2 cut(s) 348, 627
CfoI GCGC 1 cut(s) 149
Cfr13I GGNCC 2 cut(s) 612, 794
Csp6I GTAC 2 cut(s) 97, 120
CspCI CAANNNNNGTGG 2 cut(s) 393, 428
CviAII CATG 2 cut(s) 609, 936
CviQI GTAC 2 cut(s) 97, 120
DdeI CTNAG 5 cut(s) 175, 588, 630, 744, 983
DpnI GATC 5 cut(s) 489, 549, 775, 858, 969
DpnII GATC 5 cut(s) 487, 547, 773, 856, 967
EaeI YGGCCR 1 cut(s) 165
Eco130I CCWWGG 2 cut(s) 935, 961
Eco147I AGGCCT 1 cut(s) 595
Eco31I GGTCTC 1 cut(s) 266
Eco47I GGWCC 1 cut(s) 612
EcoRII CCWGG 1 cut(s) 42
EcoT14I CCWWGG 2 cut(s) 935, 961
EcoT22I ATGCAT 1 cut(s) 305
ErhI CCWWGG 2 cut(s) 935, 961
FaeI CATG 2 cut(s) 612, 939
FaqI GGGAC 1 cut(s) 125
FatI CATG 2 cut(s) 608, 935
FauNDI CATATG 1 cut(s) 514
FblI GTMKAC 1 cut(s) 957
Fnu4HI GCNGC 7 cut(s) 168, 642, 645, 648, 723, 870, 1016
FokI GGATG 4 cut(s) 73, 751, 755, 805
Fsp4HI GCNGC 7 cut(s) 168, 642, 645, 648, 723, 870, 1016
FspBI CTAG 3 cut(s) 803, 914, 1021
GlaI GCGC 1 cut(s) 148
GluI GCNGC 7 cut(s) 168, 642, 645, 648, 723, 870, 1016
GsaI CCCAGC 1 cut(s) 1015
HaeIII GGCC 3 cut(s) 167, 595, 795
HhaI GCGC 1 cut(s) 149
Hin1II CATG 2 cut(s) 612, 939
Hin6I GCGC 1 cut(s) 147
HinP1I GCGC 1 cut(s) 147
HinfI GANTC 3 cut(s) 230, 509, 812
HphI GGTGA 2 cut(s) 497, 977
Hpy166II GTNNAC 4 cut(s) 85, 120, 122, 958
Hpy188I TCNGA 9 cut(s) 178, 209, 229, 310, 492, 773, 778, 856, 972
Hpy8I GTNNAC 4 cut(s) 85, 120, 122, 958
HpyAV CCTTC 1 cut(s) 395
HpyCH4III ACNGT 2 cut(s) 89, 791
HpyCH4V TGCA 6 cut(s) 292, 303, 451, 758, 818, 893
HpyF10VI GCNNNNNNNGC 4 cut(s) 647, 722, 731, 875
HpyF3I CTNAG 5 cut(s) 175, 588, 630, 744, 983
Hsp92II CATG 2 cut(s) 612, 939
HspAI GCGC 1 cut(s) 147
Kzo9I GATC 5 cut(s) 487, 547, 773, 856, 967
LmnI GCTCC 2 cut(s) 52, 397
LpnPI CCDG 9 cut(s) 29, 56, 149, 402, 438, 532, 611, 873, 879
Lsp1109I GCAGC 4 cut(s) 628, 631, 634, 856
LweI GCATC 1 cut(s) 827
MaeI CTAG 3 cut(s) 803, 914, 1021
MaeIII GTNAC 2 cut(s) 38, 521
MalI GATC 5 cut(s) 489, 549, 775, 858, 969
MboI GATC 5 cut(s) 487, 547, 773, 856, 967
MhlI GDGCHC 2 cut(s) 890, 921
MluCI AATT 6 cut(s) 30, 194, 677, 692, 753, 928
Mph1103I ATGCAT 1 cut(s) 305
MseI TTAA 5 cut(s) 29, 74, 456, 540, 752
MslI CAYNNNNRTG 1 cut(s) 55
MspCI CTTAAG 1 cut(s) 539
MspR9I CCNGG 1 cut(s) 44
MvaI CCWGG 1 cut(s) 44
MwoI GCNNNNNNNGC 4 cut(s) 647, 722, 731, 875
NcoI CCATGG 1 cut(s) 935
NdeI CATATG 1 cut(s) 514
NdeII GATC 5 cut(s) 487, 547, 773, 856, 967
NlaIII CATG 2 cut(s) 612, 939
NlaIV GGNNCC 2 cut(s) 48, 614
NmeAIII GCCGAG 1 cut(s) 676
NmuCI GTSAC 1 cut(s) 521
NsiI ATGCAT 1 cut(s) 305
PceI AGGCCT 1 cut(s) 595
PfeI GAWTC 3 cut(s) 230, 509, 812
PkrI GCNGC 7 cut(s) 169, 643, 646, 649, 724, 871, 1017
Psp6I CCWGG 1 cut(s) 42
PspFI CCCAGC 1 cut(s) 1011
PspGI CCWGG 1 cut(s) 42
PspN4I GGNNCC 2 cut(s) 48, 614
PspPI GGNCC 2 cut(s) 612, 794
PstI CTGCAG 1 cut(s) 895
RsaI GTAC 2 cut(s) 98, 121
RsaNI GTAC 2 cut(s) 97, 120
RseI CAYNNNNRTG 1 cut(s) 55
SaqAI TTAA 5 cut(s) 29, 74, 456, 540, 752
SatI GCNGC 7 cut(s) 168, 642, 645, 648, 723, 870, 1016
Sau3AI GATC 5 cut(s) 487, 547, 773, 856, 967
Sau96I GGNCC 2 cut(s) 612, 794
ScaI AGTACT 1 cut(s) 98
ScrFI CCNGG 1 cut(s) 44
SduI GDGCHC 2 cut(s) 890, 921
SfaNI GCATC 1 cut(s) 827
SfcI CTRYAG 1 cut(s) 891
SinI GGWCC 1 cut(s) 612
SmiMI CAYNNNNRTG 1 cut(s) 55
SmlI CTYRAG 1 cut(s) 539
SmoI CTYRAG 1 cut(s) 539
Sse9I AATT 6 cut(s) 30, 194, 677, 692, 753, 928
SseBI AGGCCT 1 cut(s) 595
SsiI CCGC 4 cut(s) 70, 168, 722, 872
SspMI CTAG 3 cut(s) 803, 914, 1021
StuI AGGCCT 1 cut(s) 595
StyD4I CCNGG 1 cut(s) 42
StyI CCWWGG 2 cut(s) 935, 961
TaaI ACNGT 2 cut(s) 89, 791
TaqI TCGA 4 cut(s) 187, 621, 901, 989
TasI AATT 6 cut(s) 30, 194, 677, 692, 753, 928
TatI WGTACW 2 cut(s) 96, 119
TauI GCSGC 2 cut(s) 170, 725
TfiI GAWTC 3 cut(s) 230, 509, 812
Tru1I TTAA 5 cut(s) 29, 74, 456, 540, 752
Tru9I TTAA 5 cut(s) 29, 74, 456, 540, 752
TscAI CASTG 3 cut(s) 60, 526, 895
TseFI GTSAC 1 cut(s) 521
TseI GCWGC 5 cut(s) 641, 644, 647, 869, 1015
Tsp45I GTSAC 1 cut(s) 521
TspDTI ATGAA 1 cut(s) 492
TspRI CASTG 3 cut(s) 60, 526, 895
Vha464I CTTAAG 1 cut(s) 539
VpaK11BI GGWCC 1 cut(s) 612
XapI RAATTY 1 cut(s) 677
XmiI GTMKAC 1 cut(s) 957
XspI CTAG 3 cut(s) 803, 914, 1021
ZrmI AGTACT 1 cut(s) 98
Zsp2I ATGCAT 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.