RLG00000023699

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000142
Physical Location & Seq
Forward (+)
27222832 .. 27229552
6721 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023699

Sequence Viewer

Length: 981 bp
ATGGATGACTACAACAGGTGGTCCAAGCATCTTCCTGATGAATTGATTGAAATGATTGTGAAGCGTCTAACCCTAGTCGATTCAATCAGATTCGCTGCTGTGTGTCTTTCTTGGAGAAGTGTATCATCACAATGGTCTCAACGAGTAACCCGACTTCCATGGCTCTTGGATTCGACTGAGATTCTAGACTCAGAAACTGTGAATTATAGGCTCTACAGTCCAAGTGAAGACAGAGTCTACGACCTCAAGTTTCCAAGAGAAAATAATAAGTTGGATGCTTCACATAGTTATGGGATACGTTGCTTGGGCTCTATTGATGGCTGGTTGATAATGTCTGAATGGACATTGAATGATATTTCGTATCATGAGAAGTCCATCAATTATTTCTTGAACCCAATGACAGGTGATCGTATTAAGCTGCCCCAGCAGACCGAATTCAGCCCAAAGACATCCGCAGCCTCTTCAGATCCAAGATGTTCTGATTGCATTGTTGCATTTGGAAAAGGGTCGAATTTGGTGGAAAATCGGAATCAAAGTGGTGCTTTAGAGAAAGATATTGCAAAACAACATCTATTAGATGATCCTAACTATACAAAGAAGAAGCTTCAATTTGATTATGTGTGGGCTATTCTCAAGGATGCTGAAAAATGGACCGATAATGGTAGAAGTTCAACTAAACCACGACAAAAAAATTACTCAAGTGAAGGATATGAATCAATTGATGTCGATACATTACCATTTGATGTCGATTTGAATGCAGATGAAGATGGACAAGAGCTGTTTAGTAATGAACTTGCCTCACCTTATCGGCCTATTGGTGTAAAGAAAGCAAAGCTGACTAGGAAAGAGTTGAATGAGAAGACCAAGATTGCTCAACAGGTGAAAGAATCCAACCAACAACTGAAGGAGTTACTTGAAAAAAGCTTGTTGGAGAGAAATGCTTTTTCCTCTAAGCATGAGGAATATGCATCTCAAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

327

Amino Acids

37.65

Weight (kDa)

5.58

Isoelectric Point (pI)

40.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 10 - 43 3.4e-06 F-box domain
Beta-prop_KIB1-4 PF03478 71 - 169 4.8e-10 KIB1-4 beta-propeller
NAM-associated PF14303 200 - 319 2.8e-09 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000142)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 237
AciI CCGC 1 cut(s) 453
AclWI GGATC 2 cut(s) 461, 575
AcsI RAATTY 2 cut(s) 434, 511
AcuI CTGAAG 2 cut(s) 447, 923
AfiI CCNNNNNNNGG 1 cut(s) 401
AgsI TTSAA 9 cut(s) 50, 84, 349, 391, 608, 672, 754, 853, 917
AluBI AGCT 5 cut(s) 418, 604, 778, 835, 924
AluI AGCT 5 cut(s) 418, 604, 778, 835, 924
Alw26I GTCTC 1 cut(s) 141
AlwI GGATC 2 cut(s) 461, 575
AlwNI CAGNNNCTG 1 cut(s) 197
AoxI GGCC 1 cut(s) 809
ApeKI GCWGC 3 cut(s) 95, 418, 455
ApoI RAATTY 2 cut(s) 434, 511
AspS9I GGNCC 2 cut(s) 21, 651
AsuHPI GGTGA 3 cut(s) 416, 792, 892
AvaII GGWCC 2 cut(s) 21, 651
BanII GRGCYC 1 cut(s) 311
BarI GAAGNNNNNNTAC 2 cut(s) 138, 170
BbsI GAAGAC 2 cut(s) 234, 866
BbvI GCAGC 3 cut(s) 82, 405, 467
BccI CCATC 3 cut(s) 311, 383, 761
BcgI CGANNNNNNTGC 2 cut(s) 737, 771
BciVI GTATCC 1 cut(s) 288
BcoDI GTCTC 1 cut(s) 141
BfaI CTAG 3 cut(s) 74, 185, 840
BfmI CTRYAG 1 cut(s) 214
BfuI GTATCC 1 cut(s) 288
BisI GCNGC 3 cut(s) 96, 419, 456
BlsI GCNGC 3 cut(s) 97, 420, 457
Bme18I GGWCC 2 cut(s) 21, 651
BmgT120I GGNCC 2 cut(s) 21, 651
BmsI GCATC 4 cut(s) 37, 265, 628, 977
BpiI GAAGAC 2 cut(s) 234, 866
BpuEI CTTGAG 3 cut(s) 230, 617, 682
BsaBI GATNNNNATC 1 cut(s) 712
BsaI GGTCTC 1 cut(s) 141
BsaJI CCNNGG 1 cut(s) 158
Bsc4I CCNNNNNNNGG 1 cut(s) 401
Bse8I GATNNNNATC 1 cut(s) 712
BseDI CCNNGG 1 cut(s) 158
BseGI GGATG 4 cut(s) 10, 280, 449, 643
BseJI GATNNNNATC 1 cut(s) 712
BseLI CCNNNNNNNGG 1 cut(s) 401
BseMII CTCAG 2 cut(s) 168, 204
BseXI GCAGC 3 cut(s) 82, 405, 467
BseYI CCCAGC 1 cut(s) 423
BshFI GGCC 1 cut(s) 811
BslI CCNNNNNNNGG 1 cut(s) 401
BsmAI GTCTC 1 cut(s) 141
BsmI GAATGC 1 cut(s) 760
BsnI GGCC 1 cut(s) 811
Bso31I GGTCTC 1 cut(s) 141
Bsp1286I GDGCHC 1 cut(s) 311
Bsp143I GATC 3 cut(s) 406, 466, 580
Bsp19I CCATGG 1 cut(s) 158
BspACI CCGC 1 cut(s) 453
BspANI GGCC 1 cut(s) 811
BspCNI CTCAG 2 cut(s) 169, 203
BspHI TCATGA 1 cut(s) 364
BspPI GGATC 2 cut(s) 461, 575
BspTNI GGTCTC 1 cut(s) 141
BssECI CCNNGG 1 cut(s) 158
BssMI GATC 3 cut(s) 406, 466, 580
BssT1I CCWWGG 1 cut(s) 158
Bst4CI ACNGT 2 cut(s) 199, 218
Bst6I CTCTTC 1 cut(s) 466
BstDEI CTNAG 3 cut(s) 177, 190, 951
BstDSI CCRYGG 1 cut(s) 158
BstF5I GGATG 4 cut(s) 10, 280, 449, 643
BstKTI GATC 3 cut(s) 409, 469, 583
BstMAI GTCTC 1 cut(s) 141
BstMBI GATC 3 cut(s) 406, 466, 580
BstMWI GCNNNNNNNGC 1 cut(s) 424
BstSFI CTRYAG 1 cut(s) 214
BstV1I GCAGC 3 cut(s) 82, 405, 467
BstV2I GAAGAC 2 cut(s) 234, 866
BstX2I RGATCY 1 cut(s) 466
BstYI RGATCY 1 cut(s) 466
BsuI GTATCC 1 cut(s) 288
BsuRI GGCC 1 cut(s) 811
BtgI CCRYGG 1 cut(s) 158
BtsCI GGATG 4 cut(s) 10, 280, 449, 643
CaiI CAGNNNCTG 1 cut(s) 197
CciI TCATGA 1 cut(s) 364
Cfr13I GGNCC 2 cut(s) 21, 651
CseI GACGC 1 cut(s) 53
CviAII CATG 3 cut(s) 159, 365, 956
DdeI CTNAG 3 cut(s) 177, 190, 951
DpnI GATC 3 cut(s) 408, 468, 582
DpnII GATC 3 cut(s) 406, 466, 580
Eam1104I CTCTTC 1 cut(s) 466
EarI CTCTTC 1 cut(s) 466
Eco130I CCWWGG 1 cut(s) 158
Eco24I GRGCYC 1 cut(s) 311
Eco31I GGTCTC 1 cut(s) 141
Eco47I GGWCC 2 cut(s) 21, 651
Eco57I CTGAAG 2 cut(s) 447, 923
EcoRI GAATTC 1 cut(s) 434
EcoT14I CCWWGG 1 cut(s) 158
EcoT22I ATGCAT 1 cut(s) 970
EcoT38I GRGCYC 1 cut(s) 311
ErhI CCWWGG 1 cut(s) 158
FaeI CATG 3 cut(s) 162, 368, 959
FalI AAGNNNNNCTT 2 cut(s) 526, 558
FatI CATG 3 cut(s) 158, 364, 955
FblI GTMKAC 1 cut(s) 237
Fnu4HI GCNGC 3 cut(s) 96, 419, 456
FokI GGATG 4 cut(s) 17, 287, 436, 650
FriOI GRGCYC 1 cut(s) 311
Fsp4HI GCNGC 3 cut(s) 96, 419, 456
FspBI CTAG 3 cut(s) 74, 185, 840
GluI GCNGC 3 cut(s) 96, 419, 456
GsaI CCCAGC 1 cut(s) 427
HaeIII GGCC 1 cut(s) 811
HgaI GACGC 1 cut(s) 53
Hin1II CATG 3 cut(s) 162, 368, 959
HindIII AAGCTT 2 cut(s) 602, 922
HinfI GANTC 9 cut(s) 80, 90, 170, 181, 188, 234, 529, 713, 887
HphI GGTGA 3 cut(s) 416, 792, 892
Hpy166II GTNNAC 1 cut(s) 238
Hpy188I TCNGA 6 cut(s) 89, 193, 337, 466, 481, 528
Hpy188III TCNNGA 4 cut(s) 35, 185, 365, 388
Hpy8I GTNNAC 1 cut(s) 238
HpyAV CCTTC 2 cut(s) 698, 898
HpyCH4III ACNGT 2 cut(s) 199, 218
HpyCH4IV ACGT 1 cut(s) 298
HpyCH4V TGCA 5 cut(s) 486, 494, 560, 758, 968
HpyF10VI GCNNNNNNNGC 1 cut(s) 424
HpyF3I CTNAG 3 cut(s) 177, 190, 951
HpySE526I ACGT 1 cut(s) 298
Hsp92II CATG 3 cut(s) 162, 368, 959
Kzo9I GATC 3 cut(s) 406, 466, 580
LpnPI CCDG 5 cut(s) 48, 307, 387, 437, 863
Lsp1109I GCAGC 3 cut(s) 82, 405, 467
LweI GCATC 4 cut(s) 37, 265, 628, 977
MaeI CTAG 3 cut(s) 74, 185, 840
MaeII ACGT 1 cut(s) 298
MaeIII GTNAC 2 cut(s) 145, 909
MalI GATC 3 cut(s) 408, 468, 582
MboI GATC 3 cut(s) 406, 466, 580
MboII GAAGA 6 cut(s) 23, 239, 453, 610, 776, 871
MfeI CAATTG 1 cut(s) 717
MflI RGATCY 1 cut(s) 466
MhlI GDGCHC 1 cut(s) 311
MluCI AATT 9 cut(s) 41, 202, 379, 434, 511, 608, 691, 717, 976
MlyI GAGTC 2 cut(s) 182, 243
MmeI TCCRAC 3 cut(s) 252, 909, 915
MnlI CCTC 5 cut(s) 254, 469, 808, 952, 958
Mph1103I ATGCAT 1 cut(s) 970
MseI TTAA 1 cut(s) 414
MslI CAYNNNNRTG 2 cut(s) 130, 288
MunI CAATTG 1 cut(s) 717
Mva1269I GAATGC 1 cut(s) 760
MwoI GCNNNNNNNGC 1 cut(s) 424
NcoI CCATGG 1 cut(s) 158
NdeII GATC 3 cut(s) 406, 466, 580
NlaIII CATG 3 cut(s) 162, 368, 959
NsiI ATGCAT 1 cut(s) 970
PagI TCATGA 1 cut(s) 364
PcsI WCGNNNNNNNCGW 1 cut(s) 148
PctI GAATGC 1 cut(s) 760
PfeI GAWTC 7 cut(s) 80, 90, 170, 181, 529, 713, 887
PflFI GACNNNGTC 1 cut(s) 233
PkrI GCNGC 3 cut(s) 97, 420, 457
PleI GAGTC 2 cut(s) 182, 242
PpsI GAGTC 2 cut(s) 182, 242
PspFI CCCAGC 1 cut(s) 423
PspPI GGNCC 2 cut(s) 21, 651
PstNI CAGNNNCTG 1 cut(s) 197
PsuI RGATCY 1 cut(s) 466
PsyI GACNNNGTC 1 cut(s) 233
RseI CAYNNNNRTG 2 cut(s) 130, 288
SaqAI TTAA 1 cut(s) 414
SatI GCNGC 3 cut(s) 96, 419, 456
Sau3AI GATC 3 cut(s) 406, 466, 580
Sau96I GGNCC 2 cut(s) 21, 651
SchI GAGTC 2 cut(s) 182, 243
SduI GDGCHC 1 cut(s) 311
SfaNI GCATC 4 cut(s) 37, 265, 628, 977
SfcI CTRYAG 1 cut(s) 214
SinI GGWCC 2 cut(s) 21, 651
SmiMI CAYNNNNRTG 2 cut(s) 130, 288
SmlI CTYRAG 3 cut(s) 245, 632, 697
SmoI CTYRAG 3 cut(s) 245, 632, 697
Sse9I AATT 9 cut(s) 41, 202, 379, 434, 511, 608, 691, 717, 976
SsiI CCGC 1 cut(s) 453
SspMI CTAG 3 cut(s) 74, 185, 840
StyI CCWWGG 1 cut(s) 158
TaaI ACNGT 2 cut(s) 199, 218
TaiI ACGT 1 cut(s) 301
TaqI TCGA 5 cut(s) 78, 173, 509, 726, 747
TaqII GACCGA 2 cut(s) 446, 668
TasI AATT 9 cut(s) 41, 202, 379, 434, 511, 608, 691, 717, 976
TfiI GAWTC 7 cut(s) 80, 90, 170, 181, 529, 713, 887
Tru1I TTAA 1 cut(s) 414
Tru9I TTAA 1 cut(s) 414
TseI GCWGC 3 cut(s) 95, 418, 455
TspDTI ATGAA 4 cut(s) 54, 726, 777, 804
Tth111I GACNNNGTC 1 cut(s) 233
VpaK11BI GGWCC 2 cut(s) 21, 651
XapI RAATTY 2 cut(s) 434, 511
XbaI TCTAGA 1 cut(s) 184
XmiI GTMKAC 1 cut(s) 237
XspI CTAG 3 cut(s) 74, 185, 840
Zsp2I ATGCAT 1 cut(s) 970
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.