Rh2BG586700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000142
Physical Location & Seq
Reverse (-)
80241282 .. 80242109
828 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG586700.1

Sequence Viewer

Length: 573 bp
ATGTGTCGTGAGGTATCTCGTTCTTGGCGAGCTGCTGTTGATAGGGCAATTATGGTGATAGAGTCATGCTCCCATGTATCACAGACGTCCACAAATTCACACTACGAGAACAATCTTCCTAATTTCTTCAGGAAAGTGGTGGCATCCTCAATACCAACAAAGCAGCAGTACTGTATTGTGGTTAGCCTTTGCTTTGATAAGAAATTGTATTTGTGTAGGCACATTGACAAGTCTTGGACCCTCATTGAGACCGGCTATTGCGATGATATAGAGATAGTCGATGACAAATTATATGCTGCAACGAAGACAGGATCCGAGTTGATTCTAATGGTGTTTAGCTTTAGCATCCACGAAGTTCATGATGGTGGCCCTCTCACCTATACAGCTGAAAGGTTTTGTTTTAGGCCAAGTAATTTGGTGGATAATTTTCAAATAGTGGAAGGAGTTACTTATTGGACTCTCTACACTGACCTGTACCTAGCAAAAGGTTCTGCTTCAGAGGAAATGTTTTTGATTCTTACTGAGGTGGTCAGTGTTTACATGCAATGCACTTCGACCAATACCTTACACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295

Protein Analysis

190

Amino Acids

21.75

Weight (kDa)

5.47

Isoelectric Point (pI)

34.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 6 - 130 6.8e-10 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000142)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 89
AclWI GGATC 2 cut(s) 306, 319
AcsI RAATTY 1 cut(s) 94
AcuI CTGAAG 2 cut(s) 112, 480
AcyI GRCGYC 1 cut(s) 86
AfaI GTAC 2 cut(s) 170, 476
AgsI TTSAA 1 cut(s) 431
AluBI AGCT 3 cut(s) 32, 339, 386
AluI AGCT 3 cut(s) 32, 339, 386
Alw26I GTCTC 1 cut(s) 242
AlwI GGATC 2 cut(s) 306, 319
AoxI GGCC 2 cut(s) 367, 404
ApeKI GCWGC 3 cut(s) 32, 163, 296
ApoI RAATTY 1 cut(s) 94
AspS9I GGNCC 2 cut(s) 237, 368
AsuHPI GGTGA 2 cut(s) 67, 367
AvaII GGWCC 1 cut(s) 237
BamHI GGATCC 1 cut(s) 311
BbsI GAAGAC 1 cut(s) 311
BbvI GCAGC 3 cut(s) 19, 175, 283
BccI CCATC 1 cut(s) 356
BcoDI GTCTC 1 cut(s) 242
BfaI CTAG 2 cut(s) 479, 571
BisI GCNGC 3 cut(s) 33, 164, 297
BlsI GCNGC 3 cut(s) 34, 165, 298
BmcAI AGTACT 1 cut(s) 170
Bme18I GGWCC 1 cut(s) 237
BmgT120I GGNCC 2 cut(s) 237, 368
BmiI GGNNCC 2 cut(s) 239, 313
BmsI GCATC 2 cut(s) 152, 354
BpiI GAAGAC 1 cut(s) 311
BplI GAGNNNNNCTC 2 cut(s) 53, 85
BsaHI GRCGYC 1 cut(s) 86
BsaI GGTCTC 1 cut(s) 242
Bse118I RCCGGY 1 cut(s) 251
Bse3DI GCAATG 1 cut(s) 551
BseGI GGATG 2 cut(s) 143, 345
BseMI GCAATG 1 cut(s) 551
BseMII CTCAG 1 cut(s) 513
BseXI GCAGC 3 cut(s) 19, 175, 283
BshFI GGCC 2 cut(s) 369, 406
BsiSI CCGG 1 cut(s) 252
BsmAI GTCTC 1 cut(s) 242
BsnI GGCC 2 cut(s) 369, 406
Bso31I GGTCTC 1 cut(s) 242
Bsp143I GATC 1 cut(s) 311
BspANI GGCC 2 cut(s) 369, 406
BspCNI CTCAG 1 cut(s) 514
BspHI TCATGA 1 cut(s) 358
BspLI GGNNCC 2 cut(s) 239, 313
BspPI GGATC 2 cut(s) 306, 319
BspTNI GGTCTC 1 cut(s) 242
BsrDI GCAATG 1 cut(s) 551
BsrFI RCCGGY 1 cut(s) 251
BssAI RCCGGY 1 cut(s) 251
BssMI GATC 1 cut(s) 311
BssNI GRCGYC 1 cut(s) 86
Bst4CI ACNGT 1 cut(s) 173
BstACI GRCGYC 1 cut(s) 86
BstC8I GCNNGC 1 cut(s) 30
BstDEI CTNAG 1 cut(s) 522
BstF5I GGATG 2 cut(s) 143, 345
BstKTI GATC 1 cut(s) 314
BstMAI GTCTC 1 cut(s) 242
BstMBI GATC 1 cut(s) 311
BstNSI RCATGY 1 cut(s) 544
BstV1I GCAGC 3 cut(s) 19, 175, 283
BstV2I GAAGAC 1 cut(s) 311
BstX2I RGATCY 1 cut(s) 311
BstYI RGATCY 1 cut(s) 311
BsuRI GGCC 2 cut(s) 369, 406
BtgZI GCGATG 1 cut(s) 276
BtsCI GGATG 2 cut(s) 143, 345
BtsIMutI CAGTG 2 cut(s) 465, 538
Cac8I GCNNGC 1 cut(s) 30
CciI TCATGA 1 cut(s) 358
Cfr10I RCCGGY 1 cut(s) 251
Cfr13I GGNCC 2 cut(s) 237, 368
Csp6I GTAC 2 cut(s) 169, 475
CviAII CATG 4 cut(s) 66, 74, 359, 541
CviJI RGCY 7 cut(s) 32, 186, 255, 339, 369, 386, 406
CviKI_1 RGCY 7 cut(s) 32, 186, 255, 339, 369, 386, 406
CviQI GTAC 2 cut(s) 169, 475
DdeI CTNAG 1 cut(s) 522
DpnI GATC 1 cut(s) 313
DpnII GATC 1 cut(s) 311
Eco31I GGTCTC 1 cut(s) 242
Eco47I GGWCC 1 cut(s) 237
Eco57I CTGAAG 2 cut(s) 112, 480
FaeI CATG 4 cut(s) 69, 77, 362, 544
FaiI YATR 9 cut(s) 53, 67, 75, 269, 292, 294, 360, 381, 542
FatI CATG 4 cut(s) 65, 73, 358, 540
Fnu4HI GCNGC 3 cut(s) 33, 164, 297
FokI GGATG 2 cut(s) 130, 332
Fsp4HI GCNGC 3 cut(s) 33, 164, 297
FspBI CTAG 2 cut(s) 479, 571
GluI GCNGC 3 cut(s) 33, 164, 297
HaeIII GGCC 2 cut(s) 369, 406
HapII CCGG 1 cut(s) 252
Hin1I GRCGYC 1 cut(s) 86
Hin1II CATG 4 cut(s) 69, 77, 362, 544
HinfI GANTC 4 cut(s) 62, 322, 457, 514
HpaII CCGG 1 cut(s) 252
HphI GGTGA 2 cut(s) 67, 367
Hpy166II GTNNAC 2 cut(s) 90, 538
Hpy188I TCNGA 2 cut(s) 316, 499
Hpy188III TCNNGA 3 cut(s) 8, 130, 359
Hpy8I GTNNAC 2 cut(s) 90, 538
HpyAV CCTTC 1 cut(s) 434
HpyCH4III ACNGT 1 cut(s) 173
HpyCH4IV ACGT 1 cut(s) 86
HpyCH4V TGCA 3 cut(s) 299, 544, 549
HpyF3I CTNAG 1 cut(s) 522
HpySE526I ACGT 1 cut(s) 86
Hsp92I GRCGYC 1 cut(s) 86
Hsp92II CATG 4 cut(s) 69, 77, 362, 544
Kzo9I GATC 1 cut(s) 311
LmnI GCTCC 1 cut(s) 74
LpnPI CCDG 4 cut(s) 115, 265, 294, 485
Lsp1109I GCAGC 3 cut(s) 19, 175, 283
LweI GCATC 2 cut(s) 152, 354
MaeI CTAG 2 cut(s) 479, 571
MaeII ACGT 1 cut(s) 86
MaeIII GTNAC 1 cut(s) 445
MalI GATC 1 cut(s) 313
MboI GATC 1 cut(s) 311
MboII GAAGA 3 cut(s) 107, 118, 316
MflI RGATCY 1 cut(s) 311
MluCI AATT 7 cut(s) 48, 94, 121, 203, 287, 412, 424
MlyI GAGTC 2 cut(s) 71, 451
MnlI CCTC 6 cut(s) 4, 157, 251, 381, 493, 517
MslI CAYNNNNRTG 1 cut(s) 363
MspA1I CMGCKG 1 cut(s) 386
MspI CCGG 1 cut(s) 252
NdeII GATC 1 cut(s) 311
NlaIII CATG 4 cut(s) 69, 77, 362, 544
NlaIV GGNNCC 2 cut(s) 239, 313
NspI RCATGY 1 cut(s) 544
PagI TCATGA 1 cut(s) 358
PcsI WCGNNNNNNNCGW 1 cut(s) 25
PfeI GAWTC 2 cut(s) 322, 514
PkrI GCNGC 3 cut(s) 34, 165, 298
PleI GAGTC 2 cut(s) 70, 451
PpsI GAGTC 2 cut(s) 70, 451
PspN4I GGNNCC 2 cut(s) 239, 313
PspPI GGNCC 2 cut(s) 237, 368
PsuI RGATCY 1 cut(s) 311
PvuII CAGCTG 1 cut(s) 386
RsaI GTAC 2 cut(s) 170, 476
RsaNI GTAC 2 cut(s) 169, 475
RseI CAYNNNNRTG 1 cut(s) 363
SatI GCNGC 3 cut(s) 33, 164, 297
Sau3AI GATC 1 cut(s) 311
Sau96I GGNCC 2 cut(s) 237, 368
ScaI AGTACT 1 cut(s) 170
SchI GAGTC 2 cut(s) 71, 451
SfaNI GCATC 2 cut(s) 152, 354
SinI GGWCC 1 cut(s) 237
SmiMI CAYNNNNRTG 1 cut(s) 363
Sse9I AATT 7 cut(s) 48, 94, 121, 203, 287, 412, 424
SspMI CTAG 2 cut(s) 479, 571
TaaI ACNGT 1 cut(s) 173
TaiI ACGT 1 cut(s) 89
TaqI TCGA 2 cut(s) 279, 554
TasI AATT 7 cut(s) 48, 94, 121, 203, 287, 412, 424
TatI WGTACW 1 cut(s) 168
TfiI GAWTC 2 cut(s) 322, 514
TscAI CASTG 2 cut(s) 472, 538
TseI GCWGC 3 cut(s) 32, 163, 296
TspDTI ATGAA 1 cut(s) 347
TspRI CASTG 2 cut(s) 472, 538
VpaK11BI GGWCC 1 cut(s) 237
XapI RAATTY 1 cut(s) 94
XceI RCATGY 1 cut(s) 544
XspI CTAG 2 cut(s) 479, 571
ZraI GACGTC 1 cut(s) 87
ZrmI AGTACT 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.