Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Beta-prop_KIB1-4 | PF03478 | 31 - 305 | 5e-27 | KIB1-4 beta-propeller |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 236 |
| AciI | CCGC | 1 cut(s) | 898 |
| AclWI | GGATC | 1 cut(s) | 627 |
| AcsI | RAATTY | 1 cut(s) | 559 |
| AcyI | GRCGYC | 1 cut(s) | 22 |
| AfaI | GTAC | 3 cut(s) | 79, 216, 598 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 116, 893 |
| AflIII | ACRYGT | 1 cut(s) | 486 |
| AgsI | TTSAA | 6 cut(s) | 106, 521, 531, 677, 694, 839 |
| AjnI | CCWGG | 3 cut(s) | 44, 178, 225 |
| AluBI | AGCT | 3 cut(s) | 203, 320, 438 |
| AluI | AGCT | 3 cut(s) | 203, 320, 438 |
| Alw21I | GWGCWC | 1 cut(s) | 124 |
| AlwI | GGATC | 1 cut(s) | 627 |
| Ama87I | CYCGRG | 2 cut(s) | 123, 953 |
| AoxI | GGCC | 2 cut(s) | 278, 427 |
| ApeKI | GCWGC | 3 cut(s) | 168, 203, 371 |
| ApoI | RAATTY | 1 cut(s) | 559 |
| AseI | ATTAAT | 1 cut(s) | 711 |
| AspS9I | GGNCC | 4 cut(s) | 176, 279, 428, 716 |
| AsuHPI | GGTGA | 2 cut(s) | 758, 937 |
| AvaI | CYCGRG | 2 cut(s) | 123, 953 |
| AvaII | GGWCC | 2 cut(s) | 176, 716 |
| BanII | GRGCYC | 1 cut(s) | 471 |
| Bbv12I | GWGCWC | 1 cut(s) | 124 |
| BbvI | GCAGC | 3 cut(s) | 180, 190, 358 |
| BccI | CCATC | 4 cut(s) | 145, 506, 691, 895 |
| BciT130I | CCWGG | 3 cut(s) | 46, 180, 227 |
| BclI | TGATCA | 1 cut(s) | 307 |
| BfaI | CTAG | 3 cut(s) | 321, 435, 551 |
| BfmI | CTRYAG | 3 cut(s) | 166, 439, 592 |
| BisI | GCNGC | 3 cut(s) | 169, 204, 372 |
| BlsI | GCNGC | 3 cut(s) | 170, 205, 373 |
| BmcAI | AGTACT | 2 cut(s) | 79, 598 |
| Bme1390I | CCNGG | 3 cut(s) | 46, 180, 227 |
| Bme18I | GGWCC | 2 cut(s) | 176, 716 |
| BmeT110I | CYCGRG | 2 cut(s) | 123, 953 |
| BmgT120I | GGNCC | 4 cut(s) | 176, 279, 428, 716 |
| BmrFI | CCNGG | 3 cut(s) | 46, 180, 227 |
| BmrI | ACTGGG | 1 cut(s) | 465 |
| BmsI | GCATC | 2 cut(s) | 395, 942 |
| BmuI | ACTGGG | 1 cut(s) | 465 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 117, 149 |
| BpmI | CTGGAG | 1 cut(s) | 632 |
| BpuEI | CTTGAG | 1 cut(s) | 485 |
| BsaHI | GRCGYC | 1 cut(s) | 22 |
| BsaJI | CCNNGG | 5 cut(s) | 44, 629, 742, 954, 1010 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 116, 893 |
| Bse1I | ACTGG | 3 cut(s) | 75, 471, 476 |
| Bse3DI | GCAATG | 3 cut(s) | 178, 430, 881 |
| BseBI | CCWGG | 3 cut(s) | 46, 180, 227 |
| BseDI | CCNNGG | 5 cut(s) | 44, 629, 742, 954, 1010 |
| BseGI | GGATG | 1 cut(s) | 386 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 116, 893 |
| BseMI | GCAATG | 3 cut(s) | 178, 430, 881 |
| BseMII | CTCAG | 2 cut(s) | 18, 734 |
| BseNI | ACTGG | 3 cut(s) | 75, 471, 476 |
| BseRI | GAGGAG | 2 cut(s) | 587, 629 |
| BseXI | GCAGC | 3 cut(s) | 180, 190, 358 |
| BshFI | GGCC | 2 cut(s) | 280, 429 |
| BsiHKAI | GWGCWC | 1 cut(s) | 124 |
| BsiHKCI | CYCGRG | 2 cut(s) | 123, 953 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 116, 893 |
| BsnI | GGCC | 2 cut(s) | 280, 429 |
| BsoBI | CYCGRG | 2 cut(s) | 123, 953 |
| Bsp1286I | GDGCHC | 2 cut(s) | 124, 471 |
| Bsp143I | GATC | 4 cut(s) | 307, 619, 639, 786 |
| BspACI | CCGC | 1 cut(s) | 898 |
| BspANI | GGCC | 2 cut(s) | 280, 429 |
| BspCNI | CTCAG | 2 cut(s) | 19, 733 |
| BspMAI | CTGCAG | 2 cut(s) | 170, 596 |
| BspPI | GGATC | 1 cut(s) | 627 |
| BsrDI | GCAATG | 3 cut(s) | 178, 430, 881 |
| BsrI | ACTGG | 3 cut(s) | 75, 471, 476 |
| BssECI | CCNNGG | 5 cut(s) | 44, 629, 742, 954, 1010 |
| BssMI | GATC | 4 cut(s) | 307, 619, 639, 786 |
| BssNI | GRCGYC | 1 cut(s) | 22 |
| BssT1I | CCWWGG | 2 cut(s) | 629, 1010 |
| Bst2UI | CCWGG | 3 cut(s) | 46, 180, 227 |
| Bst4CI | ACNGT | 2 cut(s) | 233, 848 |
| BstACI | GRCGYC | 1 cut(s) | 22 |
| BstDEI | CTNAG | 2 cut(s) | 27, 720 |
| BstEII | GGTNACC | 1 cut(s) | 746 |
| BstF5I | GGATG | 1 cut(s) | 386 |
| BstKTI | GATC | 4 cut(s) | 310, 622, 642, 789 |
| BstMBI | GATC | 4 cut(s) | 307, 619, 639, 786 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 435 |
| BstNI | CCWGG | 3 cut(s) | 46, 180, 227 |
| BstNSI | RCATGY | 2 cut(s) | 490, 638 |
| BstPI | GGTNACC | 1 cut(s) | 746 |
| BstSCI | CCNGG | 3 cut(s) | 44, 178, 225 |
| BstSFI | CTRYAG | 3 cut(s) | 166, 439, 592 |
| BstV1I | GCAGC | 3 cut(s) | 180, 190, 358 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1011 |
| BsuRI | GGCC | 2 cut(s) | 280, 429 |
| BtsCI | GGATG | 1 cut(s) | 386 |
| BtsI | GCAGTG | 1 cut(s) | 163 |
| BtsIMutI | CAGTG | 2 cut(s) | 163, 728 |
| Cfr13I | GGNCC | 4 cut(s) | 176, 279, 428, 716 |
| CseI | GACGC | 1 cut(s) | 11 |
| Csp6I | GTAC | 3 cut(s) | 78, 215, 597 |
| CviAII | CATG | 5 cut(s) | 159, 294, 460, 487, 635 |
| CviQI | GTAC | 3 cut(s) | 78, 215, 597 |
| DdeI | CTNAG | 2 cut(s) | 27, 720 |
| DpnI | GATC | 4 cut(s) | 309, 621, 641, 788 |
| DpnII | GATC | 4 cut(s) | 307, 619, 639, 786 |
| DraI | TTTAAA | 1 cut(s) | 195 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 236 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 236 |
| EciI | GGCGGA | 1 cut(s) | 913 |
| Eco130I | CCWWGG | 2 cut(s) | 629, 1010 |
| Eco24I | GRGCYC | 1 cut(s) | 471 |
| Eco47I | GGWCC | 2 cut(s) | 176, 716 |
| Eco88I | CYCGRG | 2 cut(s) | 123, 953 |
| Eco91I | GGTNACC | 1 cut(s) | 746 |
| EcoO65I | GGTNACC | 1 cut(s) | 746 |
| EcoRII | CCWGG | 3 cut(s) | 44, 178, 225 |
| EcoT14I | CCWWGG | 2 cut(s) | 629, 1010 |
| EcoT38I | GRGCYC | 1 cut(s) | 471 |
| ErhI | CCWWGG | 2 cut(s) | 629, 1010 |
| FaeI | CATG | 5 cut(s) | 162, 297, 463, 490, 638 |
| FatI | CATG | 5 cut(s) | 158, 293, 459, 486, 634 |
| FbaI | TGATCA | 1 cut(s) | 307 |
| Fnu4HI | GCNGC | 3 cut(s) | 169, 204, 372 |
| FokI | GGATG | 1 cut(s) | 373 |
| FriOI | GRGCYC | 1 cut(s) | 471 |
| Fsp4HI | GCNGC | 3 cut(s) | 169, 204, 372 |
| FspBI | CTAG | 3 cut(s) | 321, 435, 551 |
| GluI | GCNGC | 3 cut(s) | 169, 204, 372 |
| GsuI | CTGGAG | 1 cut(s) | 632 |
| HaeIII | GGCC | 2 cut(s) | 280, 429 |
| HgaI | GACGC | 1 cut(s) | 11 |
| Hin1I | GRCGYC | 1 cut(s) | 22 |
| Hin1II | CATG | 5 cut(s) | 162, 297, 463, 490, 638 |
| HinfI | GANTC | 4 cut(s) | 106, 298, 521, 673 |
| HphI | GGTGA | 2 cut(s) | 758, 937 |
| Hpy166II | GTNNAC | 2 cut(s) | 130, 999 |
| Hpy188I | TCNGA | 1 cut(s) | 571 |
| Hpy188III | TCNNGA | 7 cut(s) | 26, 103, 494, 611, 694, 737, 984 |
| Hpy8I | GTNNAC | 2 cut(s) | 130, 999 |
| HpyAV | CCTTC | 4 cut(s) | 164, 671, 886, 958 |
| HpyCH4III | ACNGT | 2 cut(s) | 233, 848 |
| HpyCH4V | TGCA | 5 cut(s) | 168, 189, 252, 374, 594 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 435 |
| HpyF3I | CTNAG | 2 cut(s) | 27, 720 |
| Hsp92I | GRCGYC | 1 cut(s) | 22 |
| Hsp92II | CATG | 5 cut(s) | 162, 297, 463, 490, 638 |
| Ksp22I | TGATCA | 1 cut(s) | 307 |
| Kzo9I | GATC | 4 cut(s) | 307, 619, 639, 786 |
| LmnI | GCTCC | 1 cut(s) | 930 |
| Lsp1109I | GCAGC | 3 cut(s) | 180, 190, 358 |
| LweI | GCATC | 2 cut(s) | 395, 942 |
| MaeI | CTAG | 3 cut(s) | 321, 435, 551 |
| MaeIII | GTNAC | 5 cut(s) | 161, 746, 776, 818, 943 |
| MalI | GATC | 4 cut(s) | 309, 621, 641, 788 |
| MboI | GATC | 4 cut(s) | 307, 619, 639, 786 |
| MboII | GAAGA | 3 cut(s) | 88, 91, 718 |
| MhlI | GDGCHC | 2 cut(s) | 124, 471 |
| MluCI | AATT | 5 cut(s) | 289, 351, 559, 799, 974 |
| MlyI | GAGTC | 1 cut(s) | 292 |
| MseI | TTAA | 5 cut(s) | 194, 398, 711, 807, 878 |
| MspR9I | CCNGG | 3 cut(s) | 46, 180, 227 |
| MvaI | CCWGG | 3 cut(s) | 46, 180, 227 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 435 |
| NdeII | GATC | 4 cut(s) | 307, 619, 639, 786 |
| NlaIII | CATG | 5 cut(s) | 162, 297, 463, 490, 638 |
| NmuCI | GTSAC | 4 cut(s) | 161, 746, 818, 943 |
| NspI | RCATGY | 2 cut(s) | 490, 638 |
| PaeR7I | CTCGAG | 1 cut(s) | 123 |
| PciI | ACATGT | 1 cut(s) | 486 |
| PfeI | GAWTC | 3 cut(s) | 106, 521, 673 |
| PkrI | GCNGC | 3 cut(s) | 170, 205, 373 |
| PleI | GAGTC | 1 cut(s) | 292 |
| PpsI | GAGTC | 1 cut(s) | 292 |
| PscI | ACATGT | 1 cut(s) | 486 |
| PshBI | ATTAAT | 1 cut(s) | 711 |
| Psp6I | CCWGG | 3 cut(s) | 44, 178, 225 |
| PspEI | GGTNACC | 1 cut(s) | 746 |
| PspGI | CCWGG | 3 cut(s) | 44, 178, 225 |
| PspPI | GGNCC | 4 cut(s) | 176, 279, 428, 716 |
| PspXI | VCTCGAGB | 1 cut(s) | 123 |
| PstI | CTGCAG | 2 cut(s) | 170, 596 |
| RsaI | GTAC | 3 cut(s) | 79, 216, 598 |
| RsaNI | GTAC | 3 cut(s) | 78, 215, 597 |
| SaqAI | TTAA | 5 cut(s) | 194, 398, 711, 807, 878 |
| SatI | GCNGC | 3 cut(s) | 169, 204, 372 |
| Sau3AI | GATC | 4 cut(s) | 307, 619, 639, 786 |
| Sau96I | GGNCC | 4 cut(s) | 176, 279, 428, 716 |
| ScaI | AGTACT | 2 cut(s) | 79, 598 |
| SchI | GAGTC | 1 cut(s) | 292 |
| ScrFI | CCNGG | 3 cut(s) | 46, 180, 227 |
| SduI | GDGCHC | 2 cut(s) | 124, 471 |
| SfaNI | GCATC | 2 cut(s) | 395, 942 |
| SfcI | CTRYAG | 3 cut(s) | 166, 439, 592 |
| Sfr274I | CTCGAG | 1 cut(s) | 123 |
| SinI | GGWCC | 2 cut(s) | 176, 716 |
| SlaI | CTCGAG | 1 cut(s) | 123 |
| SmlI | CTYRAG | 2 cut(s) | 123, 464 |
| SmoI | CTYRAG | 2 cut(s) | 123, 464 |
| Sse9I | AATT | 5 cut(s) | 289, 351, 559, 799, 974 |
| SsiI | CCGC | 1 cut(s) | 898 |
| SspMI | CTAG | 3 cut(s) | 321, 435, 551 |
| StyD4I | CCNGG | 3 cut(s) | 44, 178, 225 |
| StyI | CCWWGG | 2 cut(s) | 629, 1010 |
| TaaI | ACNGT | 2 cut(s) | 233, 848 |
| TaqI | TCGA | 4 cut(s) | 124, 685, 890, 985 |
| TasI | AATT | 5 cut(s) | 289, 351, 559, 799, 974 |
| TatI | WGTACW | 2 cut(s) | 77, 596 |
| TfiI | GAWTC | 3 cut(s) | 106, 521, 673 |
| Tru1I | TTAA | 5 cut(s) | 194, 398, 711, 807, 878 |
| Tru9I | TTAA | 5 cut(s) | 194, 398, 711, 807, 878 |
| TscAI | CASTG | 2 cut(s) | 170, 728 |
| TseFI | GTSAC | 4 cut(s) | 161, 746, 818, 943 |
| TseI | GCWGC | 3 cut(s) | 168, 203, 371 |
| Tsp45I | GTSAC | 4 cut(s) | 161, 746, 818, 943 |
| TspDTI | ATGAA | 3 cut(s) | 53, 282, 954 |
| TspGWI | ACGGA | 1 cut(s) | 395 |
| TspRI | CASTG | 2 cut(s) | 170, 728 |
| VpaK11BI | GGWCC | 2 cut(s) | 176, 716 |
| VspI | ATTAAT | 1 cut(s) | 711 |
| XapI | RAATTY | 1 cut(s) | 559 |
| XceI | RCATGY | 2 cut(s) | 490, 638 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 397, 422 |
| XhoI | CTCGAG | 1 cut(s) | 123 |
| XspI | CTAG | 3 cut(s) | 321, 435, 551 |
| ZrmI | AGTACT | 2 cut(s) | 79, 598 |