Rroxscaffold_1G00014020

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
17332303 .. 17337079
4777 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00014020.1

Sequence Viewer

Length: 1017 bp
ATGGCTGATAGTGTTTTATGGCGTCCTGAGAGATTTATGAAACCCTGGTCATTTTACTTGTATAATCATCATACCAGTACTTTTAGTATCAACTTCTTCTTCTTGAATCCATTATCAGGTGCTCGAGTGAACCTCCCATCATCAAAATCCACCCTTCCATGTCACTGCAGCAATGGACCTGGCTTCTGCATTTTAAAAGTAGCTGCCTCATCAGTACCAACAAGCCAGGACTGTTATGTCGTTAGCCTTTGCATAAGTGGTCATTTGGCTTTCAGTAGGCCCAATGATAATTCATGGACTCTCATTGATCAGGGGGAAGCTAGAGGGTTTATTTTTTGTGATATAGAAATAATTTATGGGAAAATATATGCTGCAACTACGGAGGCATCCAAGTTTTTAATGGTATTTGATGTCCATTATGGCAATGGCCCTCCTAGCTATAGGGCTGAAAGGTTGGTCATGCTTGAGCCCAGTCCAGTTCCTAACATGTTTCGTGATATTAGGAGAACAGATGGAGTTGAATCCCATTCAAACTGCGAACTCATTTCCCTAGCAAAAAATTCTTTATCAGAGGAGTTGTTTATGATATTCTGCAGTACTACCTTTATTCTGGAGGAGGATCAATCTCCTTGGCATGTGATCTTTGGTAGTGATTTTATCCTTCCACCACAGATTCAAGCATTTCGAGTGTTCAAGATGGAGTGGAAGATTAATGGTCCTCAGTGGATAGAGGTTCTTGACCTCGGTGACCAGATATTATTTGTGTCTGTGGGTGGTAACAAAATGATCTCTACCAGCAATTTCCTTAATCGTAATGGTCACAATGATAAAGCATTTCAAAGAAACTGTATCTATTTTGCTTACCATAGTTCTTGTTTAACATTGCCATCGAAGGGGCGGAGTTTTGGGGTGTTTTCTTTGACAAATAGGAGCATCAAATGTGTCACCTTCCCCGAGGAACATTCATTTACCCAATTATATTCTCGACCTGTCTGGTTCACACCAAATCCTTGGTAG

Protein Analysis

338

Amino Acids

38.51

Weight (kDa)

6.78

Isoelectric Point (pI)

48.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 31 - 305 5e-27 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000142)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 236
AciI CCGC 1 cut(s) 898
AclWI GGATC 1 cut(s) 627
AcsI RAATTY 1 cut(s) 559
AcyI GRCGYC 1 cut(s) 22
AfaI GTAC 3 cut(s) 79, 216, 598
AfiI CCNNNNNNNGG 2 cut(s) 116, 893
AflIII ACRYGT 1 cut(s) 486
AgsI TTSAA 6 cut(s) 106, 521, 531, 677, 694, 839
AjnI CCWGG 3 cut(s) 44, 178, 225
AluBI AGCT 3 cut(s) 203, 320, 438
AluI AGCT 3 cut(s) 203, 320, 438
Alw21I GWGCWC 1 cut(s) 124
AlwI GGATC 1 cut(s) 627
Ama87I CYCGRG 2 cut(s) 123, 953
AoxI GGCC 2 cut(s) 278, 427
ApeKI GCWGC 3 cut(s) 168, 203, 371
ApoI RAATTY 1 cut(s) 559
AseI ATTAAT 1 cut(s) 711
AspS9I GGNCC 4 cut(s) 176, 279, 428, 716
AsuHPI GGTGA 2 cut(s) 758, 937
AvaI CYCGRG 2 cut(s) 123, 953
AvaII GGWCC 2 cut(s) 176, 716
BanII GRGCYC 1 cut(s) 471
Bbv12I GWGCWC 1 cut(s) 124
BbvI GCAGC 3 cut(s) 180, 190, 358
BccI CCATC 4 cut(s) 145, 506, 691, 895
BciT130I CCWGG 3 cut(s) 46, 180, 227
BclI TGATCA 1 cut(s) 307
BfaI CTAG 3 cut(s) 321, 435, 551
BfmI CTRYAG 3 cut(s) 166, 439, 592
BisI GCNGC 3 cut(s) 169, 204, 372
BlsI GCNGC 3 cut(s) 170, 205, 373
BmcAI AGTACT 2 cut(s) 79, 598
Bme1390I CCNGG 3 cut(s) 46, 180, 227
Bme18I GGWCC 2 cut(s) 176, 716
BmeT110I CYCGRG 2 cut(s) 123, 953
BmgT120I GGNCC 4 cut(s) 176, 279, 428, 716
BmrFI CCNGG 3 cut(s) 46, 180, 227
BmrI ACTGGG 1 cut(s) 465
BmsI GCATC 2 cut(s) 395, 942
BmuI ACTGGG 1 cut(s) 465
BplI GAGNNNNNCTC 2 cut(s) 117, 149
BpmI CTGGAG 1 cut(s) 632
BpuEI CTTGAG 1 cut(s) 485
BsaHI GRCGYC 1 cut(s) 22
BsaJI CCNNGG 5 cut(s) 44, 629, 742, 954, 1010
Bsc4I CCNNNNNNNGG 2 cut(s) 116, 893
Bse1I ACTGG 3 cut(s) 75, 471, 476
Bse3DI GCAATG 3 cut(s) 178, 430, 881
BseBI CCWGG 3 cut(s) 46, 180, 227
BseDI CCNNGG 5 cut(s) 44, 629, 742, 954, 1010
BseGI GGATG 1 cut(s) 386
BseLI CCNNNNNNNGG 2 cut(s) 116, 893
BseMI GCAATG 3 cut(s) 178, 430, 881
BseMII CTCAG 2 cut(s) 18, 734
BseNI ACTGG 3 cut(s) 75, 471, 476
BseRI GAGGAG 2 cut(s) 587, 629
BseXI GCAGC 3 cut(s) 180, 190, 358
BshFI GGCC 2 cut(s) 280, 429
BsiHKAI GWGCWC 1 cut(s) 124
BsiHKCI CYCGRG 2 cut(s) 123, 953
BslI CCNNNNNNNGG 2 cut(s) 116, 893
BsnI GGCC 2 cut(s) 280, 429
BsoBI CYCGRG 2 cut(s) 123, 953
Bsp1286I GDGCHC 2 cut(s) 124, 471
Bsp143I GATC 4 cut(s) 307, 619, 639, 786
BspACI CCGC 1 cut(s) 898
BspANI GGCC 2 cut(s) 280, 429
BspCNI CTCAG 2 cut(s) 19, 733
BspMAI CTGCAG 2 cut(s) 170, 596
BspPI GGATC 1 cut(s) 627
BsrDI GCAATG 3 cut(s) 178, 430, 881
BsrI ACTGG 3 cut(s) 75, 471, 476
BssECI CCNNGG 5 cut(s) 44, 629, 742, 954, 1010
BssMI GATC 4 cut(s) 307, 619, 639, 786
BssNI GRCGYC 1 cut(s) 22
BssT1I CCWWGG 2 cut(s) 629, 1010
Bst2UI CCWGG 3 cut(s) 46, 180, 227
Bst4CI ACNGT 2 cut(s) 233, 848
BstACI GRCGYC 1 cut(s) 22
BstDEI CTNAG 2 cut(s) 27, 720
BstEII GGTNACC 1 cut(s) 746
BstF5I GGATG 1 cut(s) 386
BstKTI GATC 4 cut(s) 310, 622, 642, 789
BstMBI GATC 4 cut(s) 307, 619, 639, 786
BstMWI GCNNNNNNNGC 1 cut(s) 435
BstNI CCWGG 3 cut(s) 46, 180, 227
BstNSI RCATGY 2 cut(s) 490, 638
BstPI GGTNACC 1 cut(s) 746
BstSCI CCNGG 3 cut(s) 44, 178, 225
BstSFI CTRYAG 3 cut(s) 166, 439, 592
BstV1I GCAGC 3 cut(s) 180, 190, 358
BstXI CCANNNNNNTGG 1 cut(s) 1011
BsuRI GGCC 2 cut(s) 280, 429
BtsCI GGATG 1 cut(s) 386
BtsI GCAGTG 1 cut(s) 163
BtsIMutI CAGTG 2 cut(s) 163, 728
Cfr13I GGNCC 4 cut(s) 176, 279, 428, 716
CseI GACGC 1 cut(s) 11
Csp6I GTAC 3 cut(s) 78, 215, 597
CviAII CATG 5 cut(s) 159, 294, 460, 487, 635
CviQI GTAC 3 cut(s) 78, 215, 597
DdeI CTNAG 2 cut(s) 27, 720
DpnI GATC 4 cut(s) 309, 621, 641, 788
DpnII GATC 4 cut(s) 307, 619, 639, 786
DraI TTTAAA 1 cut(s) 195
DrdI GACNNNNNNGTC 1 cut(s) 236
DseDI GACNNNNNNGTC 1 cut(s) 236
EciI GGCGGA 1 cut(s) 913
Eco130I CCWWGG 2 cut(s) 629, 1010
Eco24I GRGCYC 1 cut(s) 471
Eco47I GGWCC 2 cut(s) 176, 716
Eco88I CYCGRG 2 cut(s) 123, 953
Eco91I GGTNACC 1 cut(s) 746
EcoO65I GGTNACC 1 cut(s) 746
EcoRII CCWGG 3 cut(s) 44, 178, 225
EcoT14I CCWWGG 2 cut(s) 629, 1010
EcoT38I GRGCYC 1 cut(s) 471
ErhI CCWWGG 2 cut(s) 629, 1010
FaeI CATG 5 cut(s) 162, 297, 463, 490, 638
FatI CATG 5 cut(s) 158, 293, 459, 486, 634
FbaI TGATCA 1 cut(s) 307
Fnu4HI GCNGC 3 cut(s) 169, 204, 372
FokI GGATG 1 cut(s) 373
FriOI GRGCYC 1 cut(s) 471
Fsp4HI GCNGC 3 cut(s) 169, 204, 372
FspBI CTAG 3 cut(s) 321, 435, 551
GluI GCNGC 3 cut(s) 169, 204, 372
GsuI CTGGAG 1 cut(s) 632
HaeIII GGCC 2 cut(s) 280, 429
HgaI GACGC 1 cut(s) 11
Hin1I GRCGYC 1 cut(s) 22
Hin1II CATG 5 cut(s) 162, 297, 463, 490, 638
HinfI GANTC 4 cut(s) 106, 298, 521, 673
HphI GGTGA 2 cut(s) 758, 937
Hpy166II GTNNAC 2 cut(s) 130, 999
Hpy188I TCNGA 1 cut(s) 571
Hpy188III TCNNGA 7 cut(s) 26, 103, 494, 611, 694, 737, 984
Hpy8I GTNNAC 2 cut(s) 130, 999
HpyAV CCTTC 4 cut(s) 164, 671, 886, 958
HpyCH4III ACNGT 2 cut(s) 233, 848
HpyCH4V TGCA 5 cut(s) 168, 189, 252, 374, 594
HpyF10VI GCNNNNNNNGC 1 cut(s) 435
HpyF3I CTNAG 2 cut(s) 27, 720
Hsp92I GRCGYC 1 cut(s) 22
Hsp92II CATG 5 cut(s) 162, 297, 463, 490, 638
Ksp22I TGATCA 1 cut(s) 307
Kzo9I GATC 4 cut(s) 307, 619, 639, 786
LmnI GCTCC 1 cut(s) 930
Lsp1109I GCAGC 3 cut(s) 180, 190, 358
LweI GCATC 2 cut(s) 395, 942
MaeI CTAG 3 cut(s) 321, 435, 551
MaeIII GTNAC 5 cut(s) 161, 746, 776, 818, 943
MalI GATC 4 cut(s) 309, 621, 641, 788
MboI GATC 4 cut(s) 307, 619, 639, 786
MboII GAAGA 3 cut(s) 88, 91, 718
MhlI GDGCHC 2 cut(s) 124, 471
MluCI AATT 5 cut(s) 289, 351, 559, 799, 974
MlyI GAGTC 1 cut(s) 292
MseI TTAA 5 cut(s) 194, 398, 711, 807, 878
MspR9I CCNGG 3 cut(s) 46, 180, 227
MvaI CCWGG 3 cut(s) 46, 180, 227
MwoI GCNNNNNNNGC 1 cut(s) 435
NdeII GATC 4 cut(s) 307, 619, 639, 786
NlaIII CATG 5 cut(s) 162, 297, 463, 490, 638
NmuCI GTSAC 4 cut(s) 161, 746, 818, 943
NspI RCATGY 2 cut(s) 490, 638
PaeR7I CTCGAG 1 cut(s) 123
PciI ACATGT 1 cut(s) 486
PfeI GAWTC 3 cut(s) 106, 521, 673
PkrI GCNGC 3 cut(s) 170, 205, 373
PleI GAGTC 1 cut(s) 292
PpsI GAGTC 1 cut(s) 292
PscI ACATGT 1 cut(s) 486
PshBI ATTAAT 1 cut(s) 711
Psp6I CCWGG 3 cut(s) 44, 178, 225
PspEI GGTNACC 1 cut(s) 746
PspGI CCWGG 3 cut(s) 44, 178, 225
PspPI GGNCC 4 cut(s) 176, 279, 428, 716
PspXI VCTCGAGB 1 cut(s) 123
PstI CTGCAG 2 cut(s) 170, 596
RsaI GTAC 3 cut(s) 79, 216, 598
RsaNI GTAC 3 cut(s) 78, 215, 597
SaqAI TTAA 5 cut(s) 194, 398, 711, 807, 878
SatI GCNGC 3 cut(s) 169, 204, 372
Sau3AI GATC 4 cut(s) 307, 619, 639, 786
Sau96I GGNCC 4 cut(s) 176, 279, 428, 716
ScaI AGTACT 2 cut(s) 79, 598
SchI GAGTC 1 cut(s) 292
ScrFI CCNGG 3 cut(s) 46, 180, 227
SduI GDGCHC 2 cut(s) 124, 471
SfaNI GCATC 2 cut(s) 395, 942
SfcI CTRYAG 3 cut(s) 166, 439, 592
Sfr274I CTCGAG 1 cut(s) 123
SinI GGWCC 2 cut(s) 176, 716
SlaI CTCGAG 1 cut(s) 123
SmlI CTYRAG 2 cut(s) 123, 464
SmoI CTYRAG 2 cut(s) 123, 464
Sse9I AATT 5 cut(s) 289, 351, 559, 799, 974
SsiI CCGC 1 cut(s) 898
SspMI CTAG 3 cut(s) 321, 435, 551
StyD4I CCNGG 3 cut(s) 44, 178, 225
StyI CCWWGG 2 cut(s) 629, 1010
TaaI ACNGT 2 cut(s) 233, 848
TaqI TCGA 4 cut(s) 124, 685, 890, 985
TasI AATT 5 cut(s) 289, 351, 559, 799, 974
TatI WGTACW 2 cut(s) 77, 596
TfiI GAWTC 3 cut(s) 106, 521, 673
Tru1I TTAA 5 cut(s) 194, 398, 711, 807, 878
Tru9I TTAA 5 cut(s) 194, 398, 711, 807, 878
TscAI CASTG 2 cut(s) 170, 728
TseFI GTSAC 4 cut(s) 161, 746, 818, 943
TseI GCWGC 3 cut(s) 168, 203, 371
Tsp45I GTSAC 4 cut(s) 161, 746, 818, 943
TspDTI ATGAA 3 cut(s) 53, 282, 954
TspGWI ACGGA 1 cut(s) 395
TspRI CASTG 2 cut(s) 170, 728
VpaK11BI GGWCC 2 cut(s) 176, 716
VspI ATTAAT 1 cut(s) 711
XapI RAATTY 1 cut(s) 559
XceI RCATGY 2 cut(s) 490, 638
XcmI CCANNNNNNNNNTGG 2 cut(s) 397, 422
XhoI CTCGAG 1 cut(s) 123
XspI CTAG 3 cut(s) 321, 435, 551
ZrmI AGTACT 2 cut(s) 79, 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.