RLG00000024612

Glucose-induced degradation protein 4 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000142
Physical Location & Seq
Reverse (-)
37459629 .. 37463123
3495 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024612

Sequence Viewer

Length: 942 bp
ATGTGTTCCTTGGCGAGCTTCTGTGGAGATGAGTATTGCTACCAAGAGTTGCCTTCCTGCTCCTCAACTTCCACGGCTTTTGCTCATCTCATCATTTCCTTCCACATGAAAGATCAAACTTGCTTTGTGAGTGATGGTAATCGGAAACTTGTTTCTTTGGAATCATACGTCAGTGATATTTTAGAATTCCTTAAGAAAGATCAGTCGCGGTTTTGGGGGGTTTATTGTCTTGGGTCTACTGAGGGGTGGCTGACCATGGCTGAAGGTTATCCTATTATCAACTTCTTCTTGAACCCAGTATCAGCTGTTATTGCTGCGGAGGCAGGCACTGCAGGATTTCGAGTTTTCAAGCTAGTGCCTAAGAGTAATGGTCCATGGTGGGCAGAGGAGCTTGTAGACCTTGGCCATACTCTTAGCAACCAAATCCTGTTAGTGAATGCTGTTCAAAGACAATCTTTTACATTCGAAGCCTGTACAGTGAGGTTTTCAAAGATTCCTTTCCTCTTGGTGACTGCAATTTGCTATTTCAAAGGTTCTTTCAACTTGCAATTGAGACTTGAGAGTGATGATACAAGCTCTATAGCAATTGGAATTCCAGTGATTTTGATCAAATTGAAAGATGAAGCTTGGAGAGTAAATGTTCGGATACAAGGTTGTGATCTTGAGAGTGGTTATCTGTGTGGAACCATGGAAGCACTTAATGTTCCCATGGCTGACACACCAGTAGTCACCTTTTGGGAAGGGGAGATTGTTGACACCAAGAATTATACTTCCTTCACTGAGAAGTGGGAAGCAACACAAGATGATGATACAAGGCACTGGACCAAATTTCCTTCTTTTTCTGCTCTATTAAGATGGAATGAGCAATACTTTGTGAATGTTGGCACATTGTGGTTTGACTATAGCCGGGTACAACCTAGTAAGCGCTACTTGGGGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Vac_ImportDeg

Protein Analysis

314

Amino Acids

35.51

Weight (kDa)

5.04

Isoelectric Point (pI)

32.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Vac_ImportDeg PF09783 206 - 284 2e-19 Vacuolar import and degradation protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000142)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 236, 396
AccII CGCG 1 cut(s) 208
AciI CCGC 2 cut(s) 208, 317
AcoI YGGCCR 1 cut(s) 403
AcsI RAATTY 3 cut(s) 185, 591, 827
AcuI CTGAAG 1 cut(s) 282
AdeI CACNNNGTG 1 cut(s) 891
AfaI GTAC 2 cut(s) 475, 912
AfeI AGCGCT 1 cut(s) 926
AflII CTTAAG 1 cut(s) 191
AgsI TTSAA 7 cut(s) 292, 349, 446, 489, 529, 541, 616
AluBI AGCT 6 cut(s) 18, 305, 352, 391, 576, 626
AluI AGCT 6 cut(s) 18, 305, 352, 391, 576, 626
Alw26I GTCTC 1 cut(s) 547
AlwNI CAGNNNCTG 1 cut(s) 329
Aor51HI AGCGCT 1 cut(s) 926
AoxI GGCC 1 cut(s) 403
ApeKI GCWGC 1 cut(s) 314
ApoI RAATTY 3 cut(s) 185, 591, 827
AspLEI GCGC 1 cut(s) 927
AspS9I GGNCC 2 cut(s) 371, 822
AsuC2I CCSGG 1 cut(s) 908
AsuHPI GGTGA 2 cut(s) 520, 721
AsuII TTCGAA 1 cut(s) 465
AvaII GGWCC 2 cut(s) 371, 822
BalI TGGCCA 1 cut(s) 405
BbvI GCAGC 1 cut(s) 301
BccI CCATC 2 cut(s) 128, 849
BceAI ACGGC 1 cut(s) 90
BciVI GTATCC 1 cut(s) 639
BclI TGATCA 1 cut(s) 606
BcnI CCSGG 1 cut(s) 908
BcoDI GTCTC 1 cut(s) 547
BfaI CTAG 2 cut(s) 353, 918
BfmI CTRYAG 3 cut(s) 330, 579, 901
BfoI RGCGCY 1 cut(s) 928
BfrI CTTAAG 1 cut(s) 191
BfuI GTATCC 1 cut(s) 639
BisI GCNGC 1 cut(s) 315
BlsI GCNGC 1 cut(s) 316
Bme1390I CCNGG 1 cut(s) 908
Bme18I GGWCC 2 cut(s) 371, 822
BmgT120I GGNCC 2 cut(s) 371, 822
BmiI GGNNCC 1 cut(s) 685
BmrFI CCNGG 1 cut(s) 908
BmrI ACTGGG 1 cut(s) 290
BmuI ACTGGG 1 cut(s) 290
Bpu14I TTCGAA 1 cut(s) 465
BpuEI CTTGAG 2 cut(s) 578, 683
BpuMI CCSGG 1 cut(s) 908
BsaBI GATNNNNATC 2 cut(s) 138, 605
BsaJI CCNNGG 7 cut(s) 9, 72, 255, 374, 400, 687, 708
Bse1I ACTGG 4 cut(s) 296, 596, 722, 824
Bse8I GATNNNNATC 2 cut(s) 138, 605
BseDI CCNNGG 7 cut(s) 9, 72, 255, 374, 400, 687, 708
BseGI GGATG 1 cut(s) 942
BseJI GATNNNNATC 2 cut(s) 138, 605
BseMII CTCAG 2 cut(s) 231, 771
BseNI ACTGG 4 cut(s) 296, 596, 722, 824
BseRI GAGGAG 2 cut(s) 52, 401
BseXI GCAGC 1 cut(s) 301
Bsh1236I CGCG 1 cut(s) 208
BshFI GGCC 1 cut(s) 405
BsiSI CCGG 1 cut(s) 907
BsmAI GTCTC 1 cut(s) 547
BsmI GAATGC 1 cut(s) 442
BsnI GGCC 1 cut(s) 405
Bsp119I TTCGAA 1 cut(s) 465
Bsp1407I TGTACA 1 cut(s) 473
Bsp143I GATC 4 cut(s) 112, 199, 606, 658
Bsp19I CCATGG 4 cut(s) 255, 374, 687, 708
BspACI CCGC 2 cut(s) 208, 317
BspANI GGCC 1 cut(s) 405
BspCNI CTCAG 2 cut(s) 232, 772
BspFNI CGCG 1 cut(s) 208
BspLI GGNNCC 1 cut(s) 685
BspMAI CTGCAG 1 cut(s) 334
BspT104I TTCGAA 1 cut(s) 465
BspTI CTTAAG 1 cut(s) 191
BsrGI TGTACA 1 cut(s) 473
BsrI ACTGG 4 cut(s) 296, 596, 722, 824
BssECI CCNNGG 7 cut(s) 9, 72, 255, 374, 400, 687, 708
BssMI GATC 4 cut(s) 112, 199, 606, 658
BssT1I CCWWGG 6 cut(s) 9, 255, 374, 400, 687, 708
Bst4CI ACNGT 1 cut(s) 478
BstAFI CTTAAG 1 cut(s) 191
BstAPI GCANNNNNTGC 1 cut(s) 329
BstAUI TGTACA 1 cut(s) 473
BstBI TTCGAA 1 cut(s) 465
BstC8I GCNNGC 2 cut(s) 16, 325
BstDEI CTNAG 4 cut(s) 240, 360, 413, 780
BstDSI CCRYGG 5 cut(s) 72, 255, 374, 687, 708
BstF5I GGATG 1 cut(s) 942
BstFNI CGCG 1 cut(s) 208
BstH2I RGCGCY 1 cut(s) 928
BstHHI GCGC 1 cut(s) 927
BstKTI GATC 4 cut(s) 115, 202, 609, 661
BstMAI GTCTC 1 cut(s) 547
BstMBI GATC 4 cut(s) 112, 199, 606, 658
BstMWI GCNNNNNNNGC 3 cut(s) 311, 320, 329
BstSCI CCNGG 1 cut(s) 906
BstSFI CTRYAG 3 cut(s) 330, 579, 901
BstUI CGCG 1 cut(s) 208
BstV1I GCAGC 1 cut(s) 301
BsuI GTATCC 1 cut(s) 639
BsuRI GGCC 1 cut(s) 405
BtgI CCRYGG 5 cut(s) 72, 255, 374, 687, 708
BtsCI GGATG 1 cut(s) 942
BtsI GCAGTG 1 cut(s) 327
BtsIMutI CAGTG 6 cut(s) 178, 327, 483, 603, 777, 817
Cac8I GCNNGC 2 cut(s) 16, 325
CaiI CAGNNNCTG 1 cut(s) 329
CfoI GCGC 1 cut(s) 927
Cfr13I GGNCC 2 cut(s) 371, 822
Csp6I GTAC 2 cut(s) 474, 911
CspCI CAANNNNNGTGG 2 cut(s) 61, 96
CviAII CATG 5 cut(s) 106, 256, 375, 688, 709
CviQI GTAC 2 cut(s) 474, 911
DdeI CTNAG 4 cut(s) 240, 360, 413, 780
DpnI GATC 4 cut(s) 114, 201, 608, 660
DpnII GATC 4 cut(s) 112, 199, 606, 658
DraIII CACNNNGTG 1 cut(s) 891
EaeI YGGCCR 1 cut(s) 403
Eco130I CCWWGG 6 cut(s) 9, 255, 374, 400, 687, 708
Eco47I GGWCC 2 cut(s) 371, 822
Eco47III AGCGCT 1 cut(s) 926
Eco57I CTGAAG 1 cut(s) 282
EcoRI GAATTC 2 cut(s) 185, 591
EcoT14I CCWWGG 6 cut(s) 9, 255, 374, 400, 687, 708
ErhI CCWWGG 6 cut(s) 9, 255, 374, 400, 687, 708
FaeI CATG 5 cut(s) 109, 259, 378, 691, 712
FalI AAGNNNNNCTT 3 cut(s) 439, 471, 914
FatI CATG 5 cut(s) 105, 255, 374, 687, 708
FbaI TGATCA 1 cut(s) 606
FblI GTMKAC 2 cut(s) 236, 396
Fnu4HI GCNGC 1 cut(s) 315
Fsp4HI GCNGC 1 cut(s) 315
FspBI CTAG 2 cut(s) 353, 918
GlaI GCGC 1 cut(s) 926
GluI GCNGC 1 cut(s) 315
HaeII RGCGCY 1 cut(s) 928
HaeIII GGCC 1 cut(s) 405
HapII CCGG 1 cut(s) 907
HhaI GCGC 1 cut(s) 927
Hin1II CATG 5 cut(s) 109, 259, 378, 691, 712
Hin6I GCGC 1 cut(s) 925
HinP1I GCGC 1 cut(s) 925
HincII GTYRAC 1 cut(s) 754
HindII GTYRAC 1 cut(s) 754
HindIII AAGCTT 1 cut(s) 624
HinfI GANTC 2 cut(s) 161, 493
HpaII CCGG 1 cut(s) 907
HphI GGTGA 2 cut(s) 520, 721
Hpy166II GTNNAC 3 cut(s) 237, 397, 754
Hpy188I TCNGA 2 cut(s) 144, 645
Hpy188III TCNNGA 2 cut(s) 289, 662
Hpy8I GTNNAC 3 cut(s) 237, 397, 754
HpyAV CCTTC 6 cut(s) 63, 109, 257, 734, 784, 843
HpyCH4III ACNGT 1 cut(s) 478
HpyCH4IV ACGT 1 cut(s) 168
HpyCH4V TGCA 3 cut(s) 332, 515, 547
HpyF10VI GCNNNNNNNGC 3 cut(s) 311, 320, 329
HpyF3I CTNAG 4 cut(s) 240, 360, 413, 780
HpySE526I ACGT 1 cut(s) 168
Hsp92II CATG 5 cut(s) 109, 259, 378, 691, 712
HspAI GCGC 1 cut(s) 925
Ksp22I TGATCA 1 cut(s) 606
Kzo9I GATC 4 cut(s) 112, 199, 606, 658
LmnI GCTCC 2 cut(s) 65, 388
Lsp1109I GCAGC 1 cut(s) 301
MaeI CTAG 2 cut(s) 353, 918
MaeII ACGT 1 cut(s) 168
MaeIII GTNAC 2 cut(s) 508, 727
MalI GATC 4 cut(s) 114, 201, 608, 660
MboI GATC 4 cut(s) 112, 199, 606, 658
MboII GAAGA 1 cut(s) 277
MfeI CAATTG 2 cut(s) 548, 585
MlsI TGGCCA 1 cut(s) 405
MluCI AATT 8 cut(s) 185, 516, 548, 585, 591, 611, 763, 827
MluNI TGGCCA 1 cut(s) 405
MnlI CCTC 6 cut(s) 73, 235, 313, 379, 474, 512
Mox20I TGGCCA 1 cut(s) 405
MscI TGGCCA 1 cut(s) 405
MseI TTAA 3 cut(s) 192, 699, 851
Msp20I TGGCCA 1 cut(s) 405
MspA1I CMGCKG 1 cut(s) 305
MspCI CTTAAG 1 cut(s) 191
MspI CCGG 1 cut(s) 907
MspR9I CCNGG 1 cut(s) 908
MunI CAATTG 2 cut(s) 548, 585
Mva1269I GAATGC 1 cut(s) 442
MvnI CGCG 1 cut(s) 208
MwoI GCNNNNNNNGC 3 cut(s) 311, 320, 329
NciI CCSGG 1 cut(s) 908
NcoI CCATGG 4 cut(s) 255, 374, 687, 708
NdeII GATC 4 cut(s) 112, 199, 606, 658
NlaIII CATG 5 cut(s) 109, 259, 378, 691, 712
NlaIV GGNNCC 1 cut(s) 685
NmuCI GTSAC 2 cut(s) 508, 727
NspV TTCGAA 1 cut(s) 465
PctI GAATGC 1 cut(s) 442
PfeI GAWTC 2 cut(s) 161, 493
PkrI GCNGC 1 cut(s) 316
PspN4I GGNNCC 1 cut(s) 685
PspPI GGNCC 2 cut(s) 371, 822
PstI CTGCAG 1 cut(s) 334
PstNI CAGNNNCTG 1 cut(s) 329
PvuII CAGCTG 1 cut(s) 305
RsaI GTAC 2 cut(s) 475, 912
RsaNI GTAC 2 cut(s) 474, 911
SaqAI TTAA 3 cut(s) 192, 699, 851
SatI GCNGC 1 cut(s) 315
Sau3AI GATC 4 cut(s) 112, 199, 606, 658
Sau96I GGNCC 2 cut(s) 371, 822
ScrFI CCNGG 1 cut(s) 908
SfcI CTRYAG 3 cut(s) 330, 579, 901
SfuI TTCGAA 1 cut(s) 465
SinI GGWCC 2 cut(s) 371, 822
SmlI CTYRAG 3 cut(s) 191, 557, 662
SmoI CTYRAG 3 cut(s) 191, 557, 662
Sse9I AATT 8 cut(s) 185, 516, 548, 585, 591, 611, 763, 827
SsiI CCGC 2 cut(s) 208, 317
SspMI CTAG 2 cut(s) 353, 918
StyD4I CCNGG 1 cut(s) 906
StyI CCWWGG 6 cut(s) 9, 255, 374, 400, 687, 708
TaaI ACNGT 1 cut(s) 478
TaiI ACGT 1 cut(s) 171
TaqI TCGA 2 cut(s) 340, 465
TasI AATT 8 cut(s) 185, 516, 548, 585, 591, 611, 763, 827
TatI WGTACW 1 cut(s) 473
TfiI GAWTC 2 cut(s) 161, 493
Tru1I TTAA 3 cut(s) 192, 699, 851
Tru9I TTAA 3 cut(s) 192, 699, 851
TscAI CASTG 6 cut(s) 178, 334, 483, 603, 784, 824
TseFI GTSAC 2 cut(s) 508, 727
TseI GCWGC 1 cut(s) 314
Tsp45I GTSAC 2 cut(s) 508, 727
TspDTI ATGAA 2 cut(s) 122, 636
TspRI CASTG 6 cut(s) 178, 334, 483, 603, 784, 824
Vha464I CTTAAG 1 cut(s) 191
VpaK11BI GGWCC 2 cut(s) 371, 822
XapI RAATTY 3 cut(s) 185, 591, 827
XmiI GTMKAC 2 cut(s) 236, 396
XspI CTAG 2 cut(s) 353, 918
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.