Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 102 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 653 |
| Acc36I | ACCTGC | 2 cut(s) | 102, 1333 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 114 |
| AccBSI | CCGCTC | 1 cut(s) | 1269 |
| AciI | CCGC | 3 cut(s) | 1267, 1324, 1370 |
| AcoI | YGGCCR | 1 cut(s) | 1371 |
| AcsI | RAATTY | 3 cut(s) | 22, 341, 976 |
| AcyI | GRCGYC | 2 cut(s) | 439, 1233 |
| AfaI | GTAC | 4 cut(s) | 71, 496, 633, 1296 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 57, 114, 533 |
| AflIII | ACRYGT | 1 cut(s) | 903 |
| AgsI | TTSAA | 8 cut(s) | 32, 833, 938, 1094, 1103, 1111, 1309, 1361 |
| AjnI | CCWGG | 3 cut(s) | 461, 595, 642 |
| AluBI | AGCT | 5 cut(s) | 40, 359, 620, 737, 855 |
| AluI | AGCT | 5 cut(s) | 40, 359, 620, 737, 855 |
| Alw21I | GWGCWC | 1 cut(s) | 541 |
| Alw26I | GTCTC | 5 cut(s) | 1188, 1261, 1267, 1294, 1405 |
| Ama87I | CYCGRG | 1 cut(s) | 540 |
| AoxI | GGCC | 4 cut(s) | 695, 844, 1371, 1379 |
| ApeKI | GCWGC | 3 cut(s) | 585, 620, 788 |
| ApoI | RAATTY | 3 cut(s) | 22, 341, 976 |
| AseI | ATTAAT | 1 cut(s) | 1128 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1313 |
| AspS9I | GGNCC | 5 cut(s) | 117, 696, 845, 1133, 1379 |
| AsuHPI | GGTGA | 2 cut(s) | 1079, 1175 |
| AsuII | TTCGAA | 1 cut(s) | 954 |
| AvaI | CYCGRG | 1 cut(s) | 540 |
| AvaII | GGWCC | 2 cut(s) | 117, 1133 |
| AxyI | CCTNAGG | 1 cut(s) | 444 |
| BanII | GRGCYC | 1 cut(s) | 888 |
| BbsI | GAAGAC | 2 cut(s) | 1236, 1306 |
| Bbv12I | GWGCWC | 1 cut(s) | 541 |
| BbvI | GCAGC | 3 cut(s) | 597, 607, 775 |
| BccI | CCATC | 4 cut(s) | 562, 767, 1108, 1184 |
| BceAI | ACGGC | 3 cut(s) | 1220, 1379, 1383 |
| BciT130I | CCWGG | 3 cut(s) | 463, 597, 644 |
| BclI | TGATCA | 2 cut(s) | 414, 724 |
| BcoDI | GTCTC | 5 cut(s) | 1188, 1261, 1267, 1294, 1405 |
| BfaI | CTAG | 3 cut(s) | 738, 852, 968 |
| BfmI | CTRYAG | 3 cut(s) | 583, 856, 1009 |
| BfuAI | ACCTGC | 2 cut(s) | 102, 1333 |
| BisI | GCNGC | 4 cut(s) | 586, 621, 789, 1371 |
| BlsI | GCNGC | 4 cut(s) | 587, 622, 790, 1372 |
| BmcAI | AGTACT | 1 cut(s) | 496 |
| Bme1390I | CCNGG | 3 cut(s) | 463, 597, 644 |
| Bme18I | GGWCC | 2 cut(s) | 117, 1133 |
| BmeT110I | CYCGRG | 1 cut(s) | 540 |
| BmgT120I | GGNCC | 5 cut(s) | 117, 696, 845, 1133, 1379 |
| BmrFI | CCNGG | 3 cut(s) | 463, 597, 644 |
| BmrI | ACTGGG | 1 cut(s) | 882 |
| BmsI | GCATC | 2 cut(s) | 537, 812 |
| BmuI | ACTGGG | 1 cut(s) | 882 |
| BpiI | GAAGAC | 2 cut(s) | 1236, 1306 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 534, 566 |
| Bpu14I | TTCGAA | 1 cut(s) | 954 |
| BpuEI | CTTGAG | 2 cut(s) | 902, 1049 |
| BsaBI | GATNNNNATC | 1 cut(s) | 937 |
| BsaHI | GRCGYC | 2 cut(s) | 439, 1233 |
| BsaJI | CCNNGG | 4 cut(s) | 269, 461, 1046, 1159 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 57, 114, 533 |
| Bse1I | ACTGG | 3 cut(s) | 888, 893, 1391 |
| Bse21I | CCTNAGG | 1 cut(s) | 444 |
| Bse3DI | GCAATG | 2 cut(s) | 595, 847 |
| Bse8I | GATNNNNATC | 1 cut(s) | 937 |
| BseBI | CCWGG | 3 cut(s) | 463, 597, 644 |
| BseDI | CCNNGG | 4 cut(s) | 269, 461, 1046, 1159 |
| BseGI | GGATG | 3 cut(s) | 289, 803, 1195 |
| BseJI | GATNNNNATC | 1 cut(s) | 937 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 57, 114, 533 |
| BseMI | GCAATG | 2 cut(s) | 595, 847 |
| BseMII | CTCAG | 2 cut(s) | 435, 1151 |
| BseNI | ACTGG | 3 cut(s) | 888, 893, 1391 |
| BseRI | GAGGAG | 1 cut(s) | 1004 |
| BseXI | GCAGC | 3 cut(s) | 597, 607, 775 |
| BsgI | GTGCAG | 2 cut(s) | 213, 1245 |
| BshFI | GGCC | 4 cut(s) | 697, 846, 1373, 1381 |
| BsiHKAI | GWGCWC | 1 cut(s) | 541 |
| BsiHKCI | CYCGRG | 1 cut(s) | 540 |
| BslFI | GGGAC | 1 cut(s) | 1208 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 57, 114, 533 |
| BsmAI | GTCTC | 5 cut(s) | 1188, 1261, 1267, 1294, 1405 |
| BsmBI | CGTCTC | 4 cut(s) | 1261, 1267, 1294, 1405 |
| BsmFI | GGGAC | 1 cut(s) | 1208 |
| BsmI | GAATGC | 1 cut(s) | 98 |
| BsnI | GGCC | 4 cut(s) | 697, 846, 1373, 1381 |
| BsoBI | CYCGRG | 1 cut(s) | 540 |
| Bsp119I | TTCGAA | 1 cut(s) | 954 |
| Bsp1286I | GDGCHC | 2 cut(s) | 541, 888 |
| Bsp143I | GATC | 2 cut(s) | 414, 724 |
| BspACI | CCGC | 3 cut(s) | 1267, 1324, 1370 |
| BspANI | GGCC | 4 cut(s) | 697, 846, 1373, 1381 |
| BspCNI | CTCAG | 2 cut(s) | 436, 1150 |
| BspMAI | CTGCAG | 2 cut(s) | 587, 1013 |
| BspMI | ACCTGC | 2 cut(s) | 102, 1333 |
| BspT104I | TTCGAA | 1 cut(s) | 954 |
| BsrBI | CCGCTC | 1 cut(s) | 1269 |
| BsrDI | GCAATG | 2 cut(s) | 595, 847 |
| BsrI | ACTGG | 3 cut(s) | 888, 893, 1391 |
| BssECI | CCNNGG | 4 cut(s) | 269, 461, 1046, 1159 |
| BssMI | GATC | 2 cut(s) | 414, 724 |
| BssNI | GRCGYC | 2 cut(s) | 439, 1233 |
| BssT1I | CCWWGG | 1 cut(s) | 1046 |
| Bst2UI | CCWGG | 3 cut(s) | 463, 597, 644 |
| Bst4CI | ACNGT | 4 cut(s) | 162, 650, 1223, 1305 |
| Bst6I | CTCTTC | 1 cut(s) | 371 |
| BstACI | GRCGYC | 2 cut(s) | 439, 1233 |
| BstBI | TTCGAA | 1 cut(s) | 954 |
| BstC8I | GCNNGC | 2 cut(s) | 38, 213 |
| BstDEI | CTNAG | 3 cut(s) | 320, 444, 1137 |
| BstDSI | CCRYGG | 1 cut(s) | 269 |
| BstF5I | GGATG | 3 cut(s) | 289, 803, 1195 |
| BstKTI | GATC | 2 cut(s) | 417, 727 |
| BstMAI | GTCTC | 5 cut(s) | 1188, 1261, 1267, 1294, 1405 |
| BstMBI | GATC | 2 cut(s) | 414, 724 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 852, 877, 1232 |
| BstNI | CCWGG | 3 cut(s) | 463, 597, 644 |
| BstNSI | RCATGY | 2 cut(s) | 907, 1055 |
| BstSCI | CCNGG | 3 cut(s) | 461, 595, 642 |
| BstSFI | CTRYAG | 3 cut(s) | 583, 856, 1009 |
| BstV1I | GCAGC | 3 cut(s) | 597, 607, 775 |
| BstV2I | GAAGAC | 2 cut(s) | 1236, 1306 |
| Bsu36I | CCTNAGG | 1 cut(s) | 444 |
| BsuRI | GGCC | 4 cut(s) | 697, 846, 1373, 1381 |
| BtgI | CCRYGG | 1 cut(s) | 269 |
| BtsCI | GGATG | 3 cut(s) | 289, 803, 1195 |
| BtsI | GCAGTG | 1 cut(s) | 580 |
| BtsIMutI | CAGTG | 2 cut(s) | 580, 1145 |
| BveI | ACCTGC | 2 cut(s) | 102, 1333 |
| Cac8I | GCNNGC | 2 cut(s) | 38, 213 |
| Cfr13I | GGNCC | 5 cut(s) | 117, 696, 845, 1133, 1379 |
| CseI | GACGC | 2 cut(s) | 428, 1241 |
| Csp6I | GTAC | 4 cut(s) | 70, 495, 632, 1295 |
| CviAII | CATG | 8 cut(s) | 142, 207, 418, 576, 711, 877, 904, 1052 |
| CviQI | GTAC | 4 cut(s) | 70, 495, 632, 1295 |
| DdeI | CTNAG | 3 cut(s) | 320, 444, 1137 |
| DpnI | GATC | 2 cut(s) | 416, 726 |
| DpnII | GATC | 2 cut(s) | 414, 724 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 653 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 653 |
| EaeI | YGGCCR | 1 cut(s) | 1371 |
| Eam1104I | CTCTTC | 1 cut(s) | 371 |
| EarI | CTCTTC | 1 cut(s) | 371 |
| Eco130I | CCWWGG | 1 cut(s) | 1046 |
| Eco24I | GRGCYC | 1 cut(s) | 888 |
| Eco32I | GATATC | 1 cut(s) | 139 |
| Eco47I | GGWCC | 2 cut(s) | 117, 1133 |
| Eco81I | CCTNAGG | 1 cut(s) | 444 |
| Eco88I | CYCGRG | 1 cut(s) | 540 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1379 |
| EcoRII | CCWGG | 3 cut(s) | 461, 595, 642 |
| EcoRV | GATATC | 1 cut(s) | 139 |
| EcoT14I | CCWWGG | 1 cut(s) | 1046 |
| EcoT38I | GRGCYC | 1 cut(s) | 888 |
| ErhI | CCWWGG | 1 cut(s) | 1046 |
| Esp3I | CGTCTC | 4 cut(s) | 1261, 1267, 1294, 1405 |
| FaeI | CATG | 8 cut(s) | 145, 210, 421, 579, 714, 880, 907, 1055 |
| FaqI | GGGAC | 1 cut(s) | 1208 |
| FatI | CATG | 8 cut(s) | 141, 206, 417, 575, 710, 876, 903, 1051 |
| FauI | CCCGC | 1 cut(s) | 1274 |
| FbaI | TGATCA | 2 cut(s) | 414, 724 |
| Fnu4HI | GCNGC | 4 cut(s) | 586, 621, 789, 1371 |
| FokI | GGATG | 3 cut(s) | 276, 790, 1202 |
| FriOI | GRGCYC | 1 cut(s) | 888 |
| Fsp4HI | GCNGC | 4 cut(s) | 586, 621, 789, 1371 |
| FspBI | CTAG | 3 cut(s) | 738, 852, 968 |
| GluI | GCNGC | 4 cut(s) | 586, 621, 789, 1371 |
| HaeIII | GGCC | 4 cut(s) | 697, 846, 1373, 1381 |
| HgaI | GACGC | 2 cut(s) | 428, 1241 |
| Hin1I | GRCGYC | 2 cut(s) | 439, 1233 |
| Hin1II | CATG | 8 cut(s) | 145, 210, 421, 579, 714, 880, 907, 1055 |
| HinfI | GANTC | 7 cut(s) | 715, 938, 1090, 1150, 1204, 1209, 1250 |
| HphI | GGTGA | 2 cut(s) | 1079, 1175 |
| Hpy166II | GTNNAC | 2 cut(s) | 72, 1082 |
| Hpy188I | TCNGA | 6 cut(s) | 91, 175, 489, 988, 1249, 1405 |
| Hpy188III | TCNNGA | 8 cut(s) | 260, 443, 911, 1028, 1111, 1154, 1187, 1414 |
| Hpy8I | GTNNAC | 2 cut(s) | 72, 1082 |
| Hpy99I | CGWCG | 2 cut(s) | 1235, 1400 |
| HpyAV | CCTTC | 6 cut(s) | 51, 304, 581, 1223, 1303, 1411 |
| HpyCH4III | ACNGT | 4 cut(s) | 162, 650, 1223, 1305 |
| HpyCH4IV | ACGT | 2 cut(s) | 5, 1410 |
| HpyCH4V | TGCA | 9 cut(s) | 145, 194, 351, 585, 606, 669, 791, 1011, 1226 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 852, 877, 1232 |
| HpyF3I | CTNAG | 3 cut(s) | 320, 444, 1137 |
| HpySE526I | ACGT | 2 cut(s) | 5, 1410 |
| Hsp92I | GRCGYC | 2 cut(s) | 439, 1233 |
| Hsp92II | CATG | 8 cut(s) | 145, 210, 421, 579, 714, 880, 907, 1055 |
| Ksp22I | TGATCA | 2 cut(s) | 414, 724 |
| Kzo9I | GATC | 2 cut(s) | 414, 724 |
| LmnI | GCTCC | 2 cut(s) | 364, 555 |
| Lsp1109I | GCAGC | 3 cut(s) | 597, 607, 775 |
| LweI | GCATC | 2 cut(s) | 537, 812 |
| MaeI | CTAG | 3 cut(s) | 738, 852, 968 |
| MaeII | ACGT | 2 cut(s) | 5, 1410 |
| MaeIII | GTNAC | 3 cut(s) | 578, 1163, 1363 |
| MalI | GATC | 2 cut(s) | 416, 726 |
| MbiI | CCGCTC | 1 cut(s) | 1269 |
| MboI | GATC | 2 cut(s) | 414, 724 |
| MboII | GAAGA | 8 cut(s) | 110, 113, 146, 388, 508, 1135, 1236, 1306 |
| MhlI | GDGCHC | 2 cut(s) | 541, 888 |
| MluCI | AATT | 7 cut(s) | 22, 231, 310, 341, 768, 976, 1040 |
| MlyI | GAGTC | 1 cut(s) | 709 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1313 |
| MseI | TTAA | 4 cut(s) | 521, 815, 1128, 1432 |
| MspR9I | CCNGG | 3 cut(s) | 463, 597, 644 |
| Mva1269I | GAATGC | 1 cut(s) | 98 |
| MvaI | CCWGG | 3 cut(s) | 463, 597, 644 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 852, 877, 1232 |
| NdeII | GATC | 2 cut(s) | 414, 724 |
| NlaIII | CATG | 8 cut(s) | 145, 210, 421, 579, 714, 880, 907, 1055 |
| NmuCI | GTSAC | 3 cut(s) | 578, 1163, 1363 |
| NspI | RCATGY | 2 cut(s) | 907, 1055 |
| NspV | TTCGAA | 1 cut(s) | 954 |
| PaeR7I | CTCGAG | 1 cut(s) | 540 |
| PaqCI | CACCTGC | 1 cut(s) | 102 |
| PciI | ACATGT | 1 cut(s) | 903 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1227 |
| PctI | GAATGC | 1 cut(s) | 98 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1313 |
| PfeI | GAWTC | 6 cut(s) | 938, 1090, 1150, 1204, 1209, 1250 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 114 |
| PkrI | GCNGC | 4 cut(s) | 587, 622, 790, 1372 |
| PleI | GAGTC | 1 cut(s) | 709 |
| PpsI | GAGTC | 1 cut(s) | 709 |
| PscI | ACATGT | 1 cut(s) | 903 |
| PshBI | ATTAAT | 1 cut(s) | 1128 |
| Psp6I | CCWGG | 3 cut(s) | 461, 595, 642 |
| PspGI | CCWGG | 3 cut(s) | 461, 595, 642 |
| PspPI | GGNCC | 5 cut(s) | 117, 696, 845, 1133, 1379 |
| PspXI | VCTCGAGB | 1 cut(s) | 540 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 813, 845 |
| PstI | CTGCAG | 2 cut(s) | 587, 1013 |
| RsaI | GTAC | 4 cut(s) | 71, 496, 633, 1296 |
| RsaNI | GTAC | 4 cut(s) | 70, 495, 632, 1295 |
| SaqAI | TTAA | 4 cut(s) | 521, 815, 1128, 1432 |
| SatI | GCNGC | 4 cut(s) | 586, 621, 789, 1371 |
| Sau3AI | GATC | 2 cut(s) | 414, 724 |
| Sau96I | GGNCC | 5 cut(s) | 117, 696, 845, 1133, 1379 |
| ScaI | AGTACT | 1 cut(s) | 496 |
| SchI | GAGTC | 1 cut(s) | 709 |
| ScrFI | CCNGG | 3 cut(s) | 463, 597, 644 |
| SduI | GDGCHC | 2 cut(s) | 541, 888 |
| SfaNI | GCATC | 2 cut(s) | 537, 812 |
| SfcI | CTRYAG | 3 cut(s) | 583, 856, 1009 |
| Sfr274I | CTCGAG | 1 cut(s) | 540 |
| SfuI | TTCGAA | 1 cut(s) | 954 |
| SinI | GGWCC | 2 cut(s) | 117, 1133 |
| SlaI | CTCGAG | 1 cut(s) | 540 |
| SmlI | CTYRAG | 3 cut(s) | 540, 881, 1028 |
| SmoI | CTYRAG | 3 cut(s) | 540, 881, 1028 |
| Sse9I | AATT | 7 cut(s) | 22, 231, 310, 341, 768, 976, 1040 |
| SsiI | CCGC | 3 cut(s) | 1267, 1324, 1370 |
| SspMI | CTAG | 3 cut(s) | 738, 852, 968 |
| StyD4I | CCNGG | 3 cut(s) | 461, 595, 642 |
| StyI | CCWWGG | 1 cut(s) | 1046 |
| TaaI | ACNGT | 4 cut(s) | 162, 650, 1223, 1305 |
| TaiI | ACGT | 2 cut(s) | 8, 1413 |
| TaqI | TCGA | 3 cut(s) | 541, 954, 1207 |
| TasI | AATT | 7 cut(s) | 22, 231, 310, 341, 768, 976, 1040 |
| TatI | WGTACW | 3 cut(s) | 69, 494, 1294 |
| TauI | GCSGC | 1 cut(s) | 1373 |
| TfiI | GAWTC | 6 cut(s) | 938, 1090, 1150, 1204, 1209, 1250 |
| Tru1I | TTAA | 4 cut(s) | 521, 815, 1128, 1432 |
| Tru9I | TTAA | 4 cut(s) | 521, 815, 1128, 1432 |
| TscAI | CASTG | 2 cut(s) | 587, 1145 |
| TseFI | GTSAC | 3 cut(s) | 578, 1163, 1363 |
| TseI | GCWGC | 3 cut(s) | 585, 620, 788 |
| Tsp45I | GTSAC | 3 cut(s) | 578, 1163, 1363 |
| TspDTI | ATGAA | 5 cut(s) | 138, 195, 389, 470, 606 |
| TspGWI | ACGGA | 6 cut(s) | 258, 812, 1212, 1243, 1249, 1349 |
| TspRI | CASTG | 2 cut(s) | 587, 1145 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 114 |
| VpaK11BI | GGWCC | 2 cut(s) | 117, 1133 |
| VspI | ATTAAT | 1 cut(s) | 1128 |
| XapI | RAATTY | 3 cut(s) | 22, 341, 976 |
| XceI | RCATGY | 2 cut(s) | 907, 1055 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 223, 814 |
| XhoI | CTCGAG | 1 cut(s) | 540 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1313 |
| XspI | CTAG | 3 cut(s) | 738, 852, 968 |
| ZrmI | AGTACT | 1 cut(s) | 496 |