Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003887.1

Orthogroup ID

OG0000142

Physical Location & Seq

Genomic Coordinates Reverse (-)

74842 .. 75540

Gene Structure 699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003887.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

atgaagatcctcaatctaagaagcctatcaaggaagttgttatggtgtcttgattttattcgccgctggctcaaaacgatcttcactgttcatgaggacaggtggtctaagaaactcccagaagatgtgatgcaattgattctacaacggctgctcatgtcagattatttgagttgccgtgacgtgtgctgttcttggcgagccgcaattgacagcaagcgttgtcttcctgctaatcaactcccatggcttttgatcggttctcatcactcattctacatcaaagatgactgctttgtgagtgatcggaaaatttacgaaccaaagaaatggcgcgcacattactgctcggattgtgttggatcaattgagggttggctgataatcgaaggaactggacatgcatcagtacttcatcagttcttcctcttgaaccctgtatcaggagctagaattatgctcccatcacattccgcacctaattacttctgcggaatgaaagcagtagcctcttcagtaccaacaaaaacaatgttgcagcggcggcggtgttatgtgtcttgcattcactttgaaaaagaaggtggtttggctttttgtgcgcccgctgataaatcatggaccttcgttgaggccaatgcggatctaaaacttggagatgtagaaatagttgatgctcccatcacattccgcacctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010468 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030684 GO:0030686 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070545 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904 GO:2000232

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT_2 Pescadillo_N

Protein Analysis

232

Amino Acids

26.72

Weight (kDa)

8.91

Isoelectric Point (pI)

55.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000142)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica	MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica	Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis	pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis	RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata	RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora	Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa	Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha	Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana	Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	336
AclWI	GGATC	2 cut(s)	370, 651
AcsI	RAATTY	1 cut(s)	312
AcuI	CTGAAG	1 cut(s)	498
AfaI	GTAC	2 cut(s)	411, 519
AfiI	CCNNNNNNNGG	1 cut(s)	443
AflIII	ACRYGT	1 cut(s)	183
AgsI	TTSAA	2 cut(s)	433, 575
AhdI	GACNNNNNGTC	1 cut(s)	103
AjiI	CACGTC	1 cut(s)	184
AluBI	AGCT	1 cut(s)	449
AluI	AGCT	1 cut(s)	449
AlwI	GGATC	2 cut(s)	370, 651
AoxI	GGCC	1 cut(s)	633
ApeKI	GCWGC	2 cut(s)	151, 538
ApoI	RAATTY	1 cut(s)	312
AspLEI	GCGC	3 cut(s)	336, 338, 604
AspS9I	GGNCC	1 cut(s)	621
AvaII	GGWCC	1 cut(s)	621
BbsI	GAAGAC	1 cut(s)	218
BbvI	GCAGC	2 cut(s)	138, 550
BccI	CCATC	2 cut(s)	472, 689
BceAI	ACGGC	2 cut(s)	162, 164
BfaI	CTAG	1 cut(s)	450
BisI	GCNGC	6 cut(s)	64, 152, 204, 539, 542, 545
BlsI	GCNGC	6 cut(s)	65, 153, 205, 540, 543, 546
BmcAI	AGTACT	1 cut(s)	411
Bme18I	GGWCC	1 cut(s)	621
BmeRI	GACNNNNNGTC	1 cut(s)	103
BmgBI	CACGTC	1 cut(s)	184
BmgT120I	GGNCC	1 cut(s)	621
BmsI	GCATC	3 cut(s)	120, 413, 664
BpiI	GAAGAC	1 cut(s)	218
BsaJI	CCNNGG	1 cut(s)	245
Bsc4I	CCNNNNNNNGG	1 cut(s)	443
Bse1I	ACTGG	1 cut(s)	400
BseDI	CCNNGG	1 cut(s)	245
BseLI	CCNNNNNNNGG	1 cut(s)	443
BseNI	ACTGG	1 cut(s)	400
BsePI	GCGCGC	1 cut(s)	334
BseXI	GCAGC	2 cut(s)	138, 550
Bsh1236I	CGCG	1 cut(s)	336
BshFI	GGCC	1 cut(s)	635
BslI	CCNNNNNNNGG	1 cut(s)	443
BsmI	GAATGC	1 cut(s)	564
BsnI	GGCC	1 cut(s)	635
Bsp143I	GATC	6 cut(s)	6, 78, 255, 304, 362, 643
Bsp19I	CCATGG	1 cut(s)	245
BspANI	GGCC	1 cut(s)	635
BspFNI	CGCG	1 cut(s)	336
BspHI	TCATGA	1 cut(s)	91
BspPI	GGATC	2 cut(s)	370, 651
BsrI	ACTGG	1 cut(s)	400
BssECI	CCNNGG	1 cut(s)	245
BssHII	GCGCGC	1 cut(s)	334
BssMI	GATC	6 cut(s)	6, 78, 255, 304, 362, 643
BssT1I	CCWWGG	1 cut(s)	245
Bst4CI	ACNGT	1 cut(s)	88
Bst6I	CTCTTC	1 cut(s)	517
BstC8I	GCNNGC	5 cut(s)	68, 201, 218, 336, 606
BstDEI	CTNAG	2 cut(s)	17, 108
BstDSI	CCRYGG	1 cut(s)	245
BstENI	CCTNNNNNAGG	1 cut(s)	441
BstFNI	CGCG	1 cut(s)	336
BstHHI	GCGC	3 cut(s)	336, 338, 604
BstKTI	GATC	6 cut(s)	9, 81, 258, 307, 365, 646
BstMBI	GATC	6 cut(s)	6, 78, 255, 304, 362, 643
BstMWI	GCNNNNNNNGC	2 cut(s)	544, 599
BstNSI	RCATGY	1 cut(s)	404
BstUI	CGCG	1 cut(s)	336
BstV1I	GCAGC	2 cut(s)	138, 550
BstV2I	GAAGAC	1 cut(s)	218
BstX2I	RGATCY	2 cut(s)	6, 643
BstXI	CCANNNNNNTGG	1 cut(s)	330
BstYI	RGATCY	2 cut(s)	6, 643
BsuRI	GGCC	1 cut(s)	635
BtgI	CCRYGG	1 cut(s)	245
BtrI	CACGTC	1 cut(s)	184
BtsIMutI	CAGTG	1 cut(s)	84
Cac8I	GCNNGC	5 cut(s)	68, 201, 218, 336, 606
CciI	TCATGA	1 cut(s)	91
CfoI	GCGC	3 cut(s)	336, 338, 604
Cfr13I	GGNCC	1 cut(s)	621
Csp6I	GTAC	2 cut(s)	410, 518
CviAII	CATG	5 cut(s)	92, 157, 246, 401, 618
CviQI	GTAC	2 cut(s)	410, 518
DdeI	CTNAG	2 cut(s)	17, 108
DpnI	GATC	6 cut(s)	8, 80, 257, 306, 364, 645
DpnII	GATC	6 cut(s)	6, 78, 255, 304, 362, 643
DriI	GACNNNNNGTC	1 cut(s)	103
Eam1104I	CTCTTC	1 cut(s)	517
Eam1105I	GACNNNNNGTC	1 cut(s)	103
EarI	CTCTTC	1 cut(s)	517
Eco130I	CCWWGG	1 cut(s)	245
Eco47I	GGWCC	1 cut(s)	621
Eco57I	CTGAAG	1 cut(s)	498
EcoNI	CCTNNNNNAGG	1 cut(s)	441
EcoT14I	CCWWGG	1 cut(s)	245
EcoT22I	ATGCAT	1 cut(s)	406
ErhI	CCWWGG	1 cut(s)	245
FaeI	CATG	5 cut(s)	95, 160, 249, 404, 621
FaiI	YATR	8 cut(s)	43, 93, 158, 247, 402, 458, 555, 619
FatI	CATG	5 cut(s)	91, 156, 245, 400, 617
FauI	CCCGC	1 cut(s)	613
Fnu4HI	GCNGC	6 cut(s)	64, 152, 204, 539, 542, 545
Fsp4HI	GCNGC	6 cut(s)	64, 152, 204, 539, 542, 545
FspBI	CTAG	1 cut(s)	450
GlaI	GCGC	3 cut(s)	335, 337, 603
GluI	GCNGC	6 cut(s)	64, 152, 204, 539, 542, 545
HaeIII	GGCC	1 cut(s)	635
HhaI	GCGC	3 cut(s)	336, 338, 604
Hin1II	CATG	5 cut(s)	95, 160, 249, 404, 621
Hin6I	GCGC	3 cut(s)	334, 336, 602
HinP1I	GCGC	3 cut(s)	334, 336, 602
HinfI	GANTC	1 cut(s)	139
Hpy188I	TCNGA	3 cut(s)	163, 309, 352
Hpy188III	TCNNGA	4 cut(s)	50, 92, 430, 444
HpyAV	CCTTC	3 cut(s)	383, 575, 634
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	4 cut(s)	133, 404, 538, 564
HpyF10VI	GCNNNNNNNGC	2 cut(s)	544, 599
HpyF3I	CTNAG	2 cut(s)	17, 108
HpySE526I	ACGT	1 cut(s)	183
Hsp92II	CATG	5 cut(s)	95, 160, 249, 404, 621
HspAI	GCGC	3 cut(s)	334, 336, 602
Kzo9I	GATC	6 cut(s)	6, 78, 255, 304, 362, 643
LmnI	GCTCC	3 cut(s)	446, 465, 682
LpnPI	CCDG	7 cut(s)	52, 85, 132, 243, 381, 429, 450
Lsp1109I	GCAGC	2 cut(s)	138, 550
LweI	GCATC	3 cut(s)	120, 413, 664
MaeI	CTAG	1 cut(s)	450
MaeII	ACGT	1 cut(s)	183
MaeIII	GTNAC	1 cut(s)	179
MalI	GATC	6 cut(s)	8, 80, 257, 306, 364, 645
MboI	GATC	6 cut(s)	6, 78, 255, 304, 362, 643
MboII	GAAGA	6 cut(s)	16, 73, 134, 218, 415, 504
MfeI	CAATTG	3 cut(s)	134, 207, 366
MflI	RGATCY	2 cut(s)	6, 643
MluCI	AATT	6 cut(s)	134, 207, 312, 366, 453, 481
MmeI	TCCRAC	1 cut(s)	340
MnlI	CCTC	6 cut(s)	20, 88, 364, 437, 520, 625
Mph1103I	ATGCAT	1 cut(s)	406
MspA1I	CMGCKG	3 cut(s)	66, 541, 608
MunI	CAATTG	3 cut(s)	134, 207, 366
Mva1269I	GAATGC	1 cut(s)	564
MvnI	CGCG	1 cut(s)	336
MwoI	GCNNNNNNNGC	2 cut(s)	544, 599
NcoI	CCATGG	1 cut(s)	245
NdeII	GATC	6 cut(s)	6, 78, 255, 304, 362, 643
NlaIII	CATG	5 cut(s)	95, 160, 249, 404, 621
NmuCI	GTSAC	1 cut(s)	179
NsiI	ATGCAT	1 cut(s)	406
NspI	RCATGY	1 cut(s)	404
PagI	TCATGA	1 cut(s)	91
PauI	GCGCGC	1 cut(s)	334
PctI	GAATGC	1 cut(s)	564
PfeI	GAWTC	1 cut(s)	139
PkrI	GCNGC	6 cut(s)	65, 153, 205, 540, 543, 546
PspPI	GGNCC	1 cut(s)	621
PsuI	RGATCY	2 cut(s)	6, 643
PteI	GCGCGC	1 cut(s)	334
RsaI	GTAC	2 cut(s)	411, 519
RsaNI	GTAC	2 cut(s)	410, 518
SatI	GCNGC	6 cut(s)	64, 152, 204, 539, 542, 545
Sau3AI	GATC	6 cut(s)	6, 78, 255, 304, 362, 643
Sau96I	GGNCC	1 cut(s)	621
ScaI	AGTACT	1 cut(s)	411
SetI	ASST	7 cut(s)	104, 186, 451, 481, 586, 626, 698
SfaNI	GCATC	3 cut(s)	120, 413, 664
SinI	GGWCC	1 cut(s)	621
Sse9I	AATT	6 cut(s)	134, 207, 312, 366, 453, 481
SspMI	CTAG	1 cut(s)	450
StyI	CCWWGG	1 cut(s)	245
TaaI	ACNGT	1 cut(s)	88
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	1 cut(s)	387
TasI	AATT	6 cut(s)	134, 207, 312, 366, 453, 481
TatI	WGTACW	1 cut(s)	409
TauI	GCSGC	4 cut(s)	66, 206, 544, 547
TfiI	GAWTC	1 cut(s)	139
TscAI	CASTG	1 cut(s)	91
TseFI	GTSAC	1 cut(s)	179
TseI	GCWGC	2 cut(s)	151, 538
Tsp45I	GTSAC	1 cut(s)	179
TspDTI	ATGAA	4 cut(s)	17, 80, 404, 512
TspRI	CASTG	1 cut(s)	91
VpaK11BI	GGWCC	1 cut(s)	621
XagI	CCTNNNNNAGG	1 cut(s)	441
XapI	RAATTY	1 cut(s)	312
XceI	RCATGY	1 cut(s)	404
XspI	CTAG	1 cut(s)	450
ZrmI	AGTACT	1 cut(s)	411
Zsp2I	ATGCAT	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.