Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0000142

Physical Location & Seq

Genomic Coordinates Reverse (-)

6960180 .. 6961508

Gene Structure 1329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1085600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGAGGTCTCCTACTTTTCCTATTGAGACAAGGGAAAAATGGTTTTTATATGCCACGAGAGTTTTTCTAGTCATATCAGCATTCTACTGCAAGCTGTTGTCTCTAAATTTTGTTCAGCAACTTAGGGTTAGGGCATTGCGAACATACAAAAAACTAAATAGATATTGTTATTCAGAATTAGAAGAGAGTAGCAGCAGTTCCGAACTAGAAGAGAGCAGCAGCACTTGTTGGCCTAAACAAGTTCCAGAAGATATCATGCAATCGATTCTACAAAAGCTATGCATATTTGATTACGATTGGATTGGTGCAGTATGTCGTTCTTGGAAAGACAGTGTTAATATGTCCATTTCAGGCACGCTGTATAGTCCTGCTCCCCAACTTCCGTGGCTCATGCTCTCATTTCATCCAATCTCCACCCAGGACAATTTCTTTTTAAGCCTGATCGACCAGCAAGTTTACAAACCAAATCGCAAGCGCTCTACTCATAATATGAACAGGCTTGATTGTGTTGGGTCGATTGAGGGGTGGTTGATCATGGTGGATAACGCTCTTTGGCGACCGGAGGCTTTTATTATTAATAATAATACTGTTCGCTTCTTCTTTCTGAATCCAGTGTCAAAGGCTAGAGTGATGCTTCCATCCTTCAAATCCACCCTTCCTTGCAAATGCAGCAGCAAGACACCTAGCTTTGTCCCTATCAAAGCAGCAGCCTCTTCAATACCAACGAGCCAGCATTGCTTTGTGGCCAGCCTTTGCTCAAGAGGTCATGTGGCTTTCTGTAGACCGATTGATCAATCATGGACCCTCGTTGAGGCCCGGGGGGAGGGGCAACATGCACGTTTTTGTGATATAGAGATACTTGACGGGAAATTATACGCTGCAACTAAGGATGCGTTGGAATTTTTAACAGTGATTCAAATCCAAGATGCCAACGATGGCGGCCCTCCTACTTATACTACTGAAAGGTTGGTTGTGCATCATTCCGAAGGGATAGTTCCTCCACTGTTCCTCGAGACGTGGAGAATGAATGGAATCGTAGAACAAATAAGCGAAAGTGTTTCTCTTGCAATAGATTCTAAATCAAAGGAGCTGTTTATGGTTTTACATAAAACTGTATATAAGATCGTGGAAGATCCAACAATTCCTTCGTATGTGATCTCCGGGACTCGTATTCAATTCGAATCTCCACCTCGTACTCAAGGATTTCGAGTGTTTAAGTTGGAGCAGAATACCGAGGGTCTTCCTCAGTGGGCAGAGGTTGTTGACCTTGGTGATCGGATATTGTTTAGCAGTCTGATAGTGGGTCTTTTCATTAAAGGAGCATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010468 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030684 GO:0030686 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070545 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904 GO:2000232

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT_2 Pescadillo_N

Protein Analysis

443

Amino Acids

50.32

Weight (kDa)

7.92

Isoelectric Point (pI)

46.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	144 - 430	6.2e-29	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000142)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica	MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica	Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis	pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis	RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata	RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora	Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa	Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha	Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana	Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	781
AciI	CCGC	1 cut(s)	939
AclWI	GGATC	1 cut(s)	1127
AcoI	YGGCCR	1 cut(s)	744
AcsI	RAATTY	2 cut(s)	106, 899
AfaI	GTAC	1 cut(s)	1195
AfeI	AGCGCT	1 cut(s)	476
AfiI	CCNNNNNNNGG	2 cut(s)	811, 823
AgsI	TTSAA	4 cut(s)	646, 717, 917, 1175
AjiI	CACGTC	1 cut(s)	1017
AjnI	CCWGG	1 cut(s)	417
AjuI	GAANNNNNNNTTGG	2 cut(s)	1129, 1161
AluBI	AGCT	4 cut(s)	94, 277, 687, 1090
AluI	AGCT	4 cut(s)	94, 277, 687, 1090
Alw26I	GTCTC	4 cut(s)	12, 20, 105, 1007
AlwI	GGATC	1 cut(s)	1127
Ama87I	CYCGRG	2 cut(s)	816, 1010
Aor51HI	AGCGCT	1 cut(s)	476
AoxI	GGCC	4 cut(s)	230, 744, 813, 940
ApeKI	GCWGC	8 cut(s)	192, 216, 219, 669, 672, 704, 707, 878
ApoI	RAATTY	2 cut(s)	106, 899
AseI	ATTAAT	1 cut(s)	576
AspLEI	GCGC	1 cut(s)	477
AspS9I	GGNCC	3 cut(s)	801, 814, 941
AsuC2I	CCSGG	3 cut(s)	817, 818, 1162
AsuHPI	GGTGA	1 cut(s)	1283
AsuII	TTCGAA	1 cut(s)	1179
AvaI	CYCGRG	2 cut(s)	816, 1010
AvaII	GGWCC	1 cut(s)	801
BalI	TGGCCA	1 cut(s)	746
BauI	CACGAG	1 cut(s)	55
BbsI	GAAGAC	1 cut(s)	1232
BbvI	GCAGC	8 cut(s)	204, 228, 231, 681, 684, 716, 719, 865
BccI	CCATC	2 cut(s)	646, 929
BciT130I	CCWGG	1 cut(s)	419
BclI	TGATCA	2 cut(s)	531, 790
BcnI	CCSGG	3 cut(s)	817, 818, 1162
BcoDI	GTCTC	4 cut(s)	12, 20, 105, 1007
BfaI	CTAG	4 cut(s)	68, 206, 624, 684
BfmI	CTRYAG	1 cut(s)	778
BfoI	RGCGCY	1 cut(s)	478
BisI	GCNGC	9 cut(s)	193, 217, 220, 670, 673, 705, 708, 879, 940
BlsI	GCNGC	9 cut(s)	194, 218, 221, 671, 674, 706, 709, 880, 941
Bme1390I	CCNGG	4 cut(s)	419, 817, 818, 1162
Bme18I	GGWCC	1 cut(s)	801
BmeT110I	CYCGRG	2 cut(s)	816, 1010
BmgBI	CACGTC	1 cut(s)	1017
BmgT120I	GGNCC	3 cut(s)	801, 814, 941
BmiI	GGNNCC	1 cut(s)	803
BmrFI	CCNGG	4 cut(s)	419, 817, 818, 1162
BmsI	GCATC	4 cut(s)	621, 880, 916, 985
BpiI	GAAGAC	1 cut(s)	1232
Bpu14I	TTCGAA	1 cut(s)	1179
BpuEI	CTTGAG	2 cut(s)	742, 1182
BpuMI	CCSGG	3 cut(s)	817, 818, 1162
Bsa29I	ATCGAT	1 cut(s)	263
BsaBI	GATNNNNATC	1 cut(s)	917
BsaI	GGTCTC	1 cut(s)	12
BsaJI	CCNNGG	6 cut(s)	383, 417, 816, 817, 1233, 1267
BsaWI	WCCGGW	1 cut(s)	559
Bsc4I	CCNNNNNNNGG	2 cut(s)	811, 823
Bse1I	ACTGG	1 cut(s)	611
Bse3DI	GCAATG	2 cut(s)	134, 733
Bse8I	GATNNNNATC	1 cut(s)	917
BseBI	CCWGG	1 cut(s)	419
BseCI	ATCGAT	1 cut(s)	263
BseDI	CCNNGG	6 cut(s)	383, 417, 816, 817, 1233, 1267
BseGI	GGATG	3 cut(s)	403, 638, 895
BseJI	GATNNNNATC	1 cut(s)	917
BseLI	CCNNNNNNNGG	2 cut(s)	811, 823
BseMI	GCAATG	2 cut(s)	134, 733
BseMII	CTCAG	1 cut(s)	1259
BseNI	ACTGG	1 cut(s)	611
BseXI	GCAGC	8 cut(s)	204, 228, 231, 681, 684, 716, 719, 865
BsgI	GTGCAG	1 cut(s)	327
Bsh1285I	CGRYCG	1 cut(s)	560
BshFI	GGCC	4 cut(s)	232, 746, 815, 942
BshVI	ATCGAT	1 cut(s)	263
BsiEI	CGRYCG	1 cut(s)	560
BsiHKCI	CYCGRG	2 cut(s)	816, 1010
BsiSI	CCGG	3 cut(s)	560, 817, 1161
BslFI	GGGAC	2 cut(s)	677, 1177
BslI	CCNNNNNNNGG	2 cut(s)	811, 823
BsmAI	GTCTC	4 cut(s)	12, 20, 105, 1007
BsmBI	CGTCTC	1 cut(s)	1007
BsmFI	GGGAC	2 cut(s)	677, 1177
BsmI	GAATGC	1 cut(s)	80
BsnI	GGCC	4 cut(s)	232, 746, 815, 942
Bso31I	GGTCTC	1 cut(s)	12
BsoBI	CYCGRG	2 cut(s)	816, 1010
Bsp119I	TTCGAA	1 cut(s)	1179
Bsp143I	GATC	7 cut(s)	441, 531, 790, 1122, 1132, 1155, 1273
BspACI	CCGC	1 cut(s)	939
BspANI	GGCC	4 cut(s)	232, 746, 815, 942
BspCNI	CTCAG	1 cut(s)	1258
BspDI	ATCGAT	1 cut(s)	263
BspLI	GGNNCC	1 cut(s)	803
BspPI	GGATC	1 cut(s)	1127
BspT104I	TTCGAA	1 cut(s)	1179
BspTNI	GGTCTC	1 cut(s)	12
BsrDI	GCAATG	2 cut(s)	134, 733
BsrI	ACTGG	1 cut(s)	611
BssECI	CCNNGG	6 cut(s)	383, 417, 816, 817, 1233, 1267
BssMI	GATC	7 cut(s)	441, 531, 790, 1122, 1132, 1155, 1273
BssSI	CACGAG	1 cut(s)	55
BssT1I	CCWWGG	1 cut(s)	1267
Bst2BI	CACGAG	1 cut(s)	55
Bst2UI	CCWGG	1 cut(s)	419
Bst4CI	ACNGT	5 cut(s)	332, 589, 910, 1005, 1114
Bst6I	CTCTTC	3 cut(s)	177, 204, 718
BstBI	TTCGAA	1 cut(s)	1179
BstC8I	GCNNGC	5 cut(s)	92, 356, 473, 731, 748
BstDEI	CTNAG	3 cut(s)	122, 885, 1245
BstDSI	CCRYGG	1 cut(s)	383
BstENI	CCTNNNNNAGG	1 cut(s)	809
BstF5I	GGATG	3 cut(s)	403, 638, 895
BstH2I	RGCGCY	1 cut(s)	478
BstHHI	GCGC	1 cut(s)	477
BstKTI	GATC	7 cut(s)	444, 534, 793, 1125, 1135, 1158, 1276
BstMAI	GTCTC	4 cut(s)	12, 20, 105, 1007
BstMBI	GATC	7 cut(s)	441, 531, 790, 1122, 1132, 1155, 1273
BstMCI	CGRYCG	1 cut(s)	560
BstMWI	GCNNNNNNNGC	2 cut(s)	669, 735
BstNI	CCWGG	1 cut(s)	419
BstNSI	RCATGY	1 cut(s)	836
BstSCI	CCNGG	4 cut(s)	417, 815, 816, 1160
BstSFI	CTRYAG	1 cut(s)	778
BstV1I	GCAGC	8 cut(s)	204, 228, 231, 681, 684, 716, 719, 865
BstV2I	GAAGAC	1 cut(s)	1232
BstX2I	RGATCY	1 cut(s)	1132
BstYI	RGATCY	1 cut(s)	1132
Bsu15I	ATCGAT	1 cut(s)	263
BsuRI	GGCC	4 cut(s)	232, 746, 815, 942
BsuTUI	ATCGAT	1 cut(s)	263
BtgI	CCRYGG	1 cut(s)	383
BtrI	CACGTC	1 cut(s)	1017
BtsCI	GGATG	3 cut(s)	403, 638, 895
BtsIMutI	CAGTG	5 cut(s)	337, 618, 915, 1001, 1253
Cac8I	GCNNGC	5 cut(s)	92, 356, 473, 731, 748
CfoI	GCGC	1 cut(s)	477
Cfr13I	GGNCC	3 cut(s)	801, 814, 941
Cfr9I	CCCGGG	1 cut(s)	816
ClaI	ATCGAT	1 cut(s)	263
Csp6I	GTAC	1 cut(s)	1194
CspCI	CAANNNNNGTGG	2 cut(s)	365, 400
CviAII	CATG	6 cut(s)	256, 391, 535, 767, 798, 833
CviQI	GTAC	1 cut(s)	1194
DdeI	CTNAG	3 cut(s)	122, 885, 1245
DpnI	GATC	7 cut(s)	443, 533, 792, 1124, 1134, 1157, 1275
DpnII	GATC	7 cut(s)	441, 531, 790, 1122, 1132, 1155, 1273
EaeI	YGGCCR	1 cut(s)	744
Eam1104I	CTCTTC	3 cut(s)	177, 204, 718
EarI	CTCTTC	3 cut(s)	177, 204, 718
Eco130I	CCWWGG	1 cut(s)	1267
Eco31I	GGTCTC	1 cut(s)	12
Eco32I	GATATC	1 cut(s)	253
Eco47I	GGWCC	1 cut(s)	801
Eco47III	AGCGCT	1 cut(s)	476
Eco88I	CYCGRG	2 cut(s)	816, 1010
EcoNI	CCTNNNNNAGG	1 cut(s)	809
EcoRII	CCWGG	1 cut(s)	417
EcoRV	GATATC	1 cut(s)	253
EcoT14I	CCWWGG	1 cut(s)	1267
EcoT22I	ATGCAT	1 cut(s)	284
ErhI	CCWWGG	1 cut(s)	1267
Esp3I	CGTCTC	1 cut(s)	1007
FaeI	CATG	6 cut(s)	259, 394, 538, 770, 801, 836
FaqI	GGGAC	2 cut(s)	677, 1177
FatI	CATG	6 cut(s)	255, 390, 534, 766, 797, 832
FbaI	TGATCA	2 cut(s)	531, 790
FblI	GTMKAC	1 cut(s)	781
Fnu4HI	GCNGC	9 cut(s)	193, 217, 220, 670, 673, 705, 708, 879, 940
FokI	GGATG	3 cut(s)	390, 625, 902
Fsp4HI	GCNGC	9 cut(s)	193, 217, 220, 670, 673, 705, 708, 879, 940
FspBI	CTAG	4 cut(s)	68, 206, 624, 684
GlaI	GCGC	1 cut(s)	476
GluI	GCNGC	9 cut(s)	193, 217, 220, 670, 673, 705, 708, 879, 940
HaeII	RGCGCY	1 cut(s)	478
HaeIII	GGCC	4 cut(s)	232, 746, 815, 942
HapII	CCGG	3 cut(s)	560, 817, 1161
HhaI	GCGC	1 cut(s)	477
Hin1II	CATG	6 cut(s)	259, 394, 538, 770, 801, 836
Hin6I	GCGC	1 cut(s)	475
HinP1I	GCGC	1 cut(s)	475
HincII	GTYRAC	1 cut(s)	1264
HindII	GTYRAC	1 cut(s)	1264
HinfI	GANTC	7 cut(s)	265, 607, 913, 1032, 1073, 1165, 1181
HpaII	CCGG	3 cut(s)	560, 817, 1161
HphI	GGTGA	1 cut(s)	1283
Hpy166II	GTNNAC	3 cut(s)	457, 782, 1264
Hpy188I	TCNGA	6 cut(s)	175, 202, 606, 985, 1278, 1296
Hpy188III	TCNNGA	3 cut(s)	245, 759, 1012
Hpy8I	GTNNAC	3 cut(s)	457, 782, 1264
HpyAV	CCTTC	4 cut(s)	652, 665, 980, 1155
HpyCH4III	ACNGT	5 cut(s)	332, 589, 910, 1005, 1114
HpyCH4IV	ACGT	2 cut(s)	838, 1016
HpyF10VI	GCNNNNNNNGC	2 cut(s)	669, 735
HpyF3I	CTNAG	3 cut(s)	122, 885, 1245
HpySE526I	ACGT	2 cut(s)	838, 1016
Hsp92II	CATG	6 cut(s)	259, 394, 538, 770, 801, 836
HspAI	GCGC	1 cut(s)	475
Ksp22I	TGATCA	2 cut(s)	531, 790
Kzo9I	GATC	7 cut(s)	441, 531, 790, 1122, 1132, 1155, 1273
LmnI	GCTCC	4 cut(s)	376, 1087, 1222, 1319
Lsp1109I	GCAGC	8 cut(s)	204, 228, 231, 681, 684, 716, 719, 865
LweI	GCATC	4 cut(s)	621, 880, 916, 985
MaeI	CTAG	4 cut(s)	68, 206, 624, 684
MaeII	ACGT	2 cut(s)	838, 1016
MalI	GATC	7 cut(s)	443, 533, 792, 1124, 1134, 1157, 1275
MboI	GATC	7 cut(s)	441, 531, 790, 1122, 1132, 1155, 1273
MboII	GAAGA	7 cut(s)	194, 221, 260, 589, 705, 1142, 1232
MflI	RGATCY	1 cut(s)	1132
MlsI	TGGCCA	1 cut(s)	746
MluCI	AATT	7 cut(s)	106, 176, 424, 869, 899, 1140, 1175
MluNI	TGGCCA	1 cut(s)	746
MlyI	GAGTC	1 cut(s)	1159
MmeI	TCCRAC	3 cut(s)	876, 1160, 1200
Mox20I	TGGCCA	1 cut(s)	746
Mph1103I	ATGCAT	1 cut(s)	284
MscI	TGGCCA	1 cut(s)	746
MseI	TTAA	6 cut(s)	336, 434, 576, 905, 1215, 1314
Msp20I	TGGCCA	1 cut(s)	746
MspI	CCGG	3 cut(s)	560, 817, 1161
MspR9I	CCNGG	4 cut(s)	419, 817, 818, 1162
Mva1269I	GAATGC	1 cut(s)	80
MvaI	CCWGG	1 cut(s)	419
MwoI	GCNNNNNNNGC	2 cut(s)	669, 735
NciI	CCSGG	3 cut(s)	817, 818, 1162
NdeII	GATC	7 cut(s)	441, 531, 790, 1122, 1132, 1155, 1273
NlaIII	CATG	6 cut(s)	259, 394, 538, 770, 801, 836
NlaIV	GGNNCC	1 cut(s)	803
NsiI	ATGCAT	1 cut(s)	284
NspI	RCATGY	1 cut(s)	836
NspV	TTCGAA	1 cut(s)	1179
PaeR7I	CTCGAG	1 cut(s)	1010
PctI	GAATGC	1 cut(s)	80
PfeI	GAWTC	6 cut(s)	265, 607, 913, 1032, 1073, 1181
PfoI	TCCNGGA	1 cut(s)	1160
PkrI	GCNGC	9 cut(s)	194, 218, 221, 671, 674, 706, 709, 880, 941
PleI	GAGTC	1 cut(s)	1159
PpsI	GAGTC	1 cut(s)	1159
PshBI	ATTAAT	1 cut(s)	576
Psp6I	CCWGG	1 cut(s)	417
PspGI	CCWGG	1 cut(s)	417
PspN4I	GGNNCC	1 cut(s)	803
PspPI	GGNCC	3 cut(s)	801, 814, 941
PsrI	GAACNNNNNNTAC	2 cut(s)	181, 213
PsuI	RGATCY	1 cut(s)	1132
RsaI	GTAC	1 cut(s)	1195
RsaNI	GTAC	1 cut(s)	1194
SaqAI	TTAA	6 cut(s)	336, 434, 576, 905, 1215, 1314
SatI	GCNGC	9 cut(s)	193, 217, 220, 670, 673, 705, 708, 879, 940
Sau3AI	GATC	7 cut(s)	441, 531, 790, 1122, 1132, 1155, 1273
Sau96I	GGNCC	3 cut(s)	801, 814, 941
SchI	GAGTC	1 cut(s)	1159
ScrFI	CCNGG	4 cut(s)	419, 817, 818, 1162
SfaNI	GCATC	4 cut(s)	621, 880, 916, 985
SfcI	CTRYAG	1 cut(s)	778
Sfr274I	CTCGAG	1 cut(s)	1010
SfuI	TTCGAA	1 cut(s)	1179
SinI	GGWCC	1 cut(s)	801
SlaI	CTCGAG	1 cut(s)	1010
SmaI	CCCGGG	1 cut(s)	818
SmlI	CTYRAG	3 cut(s)	757, 1010, 1197
SmoI	CTYRAG	3 cut(s)	757, 1010, 1197
Sse9I	AATT	7 cut(s)	106, 176, 424, 869, 899, 1140, 1175
SsiI	CCGC	1 cut(s)	939
SspMI	CTAG	4 cut(s)	68, 206, 624, 684
StyD4I	CCNGG	4 cut(s)	417, 815, 816, 1160
StyI	CCWWGG	1 cut(s)	1267
TaaI	ACNGT	5 cut(s)	332, 589, 910, 1005, 1114
TaiI	ACGT	2 cut(s)	841, 1019
TaqI	TCGA	6 cut(s)	263, 444, 515, 1011, 1179, 1207
TaqII	GACCGA	1 cut(s)	799
TasI	AATT	7 cut(s)	106, 176, 424, 869, 899, 1140, 1175
TauI	GCSGC	1 cut(s)	942
TfiI	GAWTC	6 cut(s)	265, 607, 913, 1032, 1073, 1181
Tru1I	TTAA	6 cut(s)	336, 434, 576, 905, 1215, 1314
Tru9I	TTAA	6 cut(s)	336, 434, 576, 905, 1215, 1314
TscAI	CASTG	5 cut(s)	337, 618, 915, 1008, 1253
TseI	GCWGC	8 cut(s)	192, 216, 219, 669, 672, 704, 707, 878
TspDTI	ATGAA	4 cut(s)	392, 506, 1040, 1300
TspGWI	ACGGA	1 cut(s)	372
TspMI	CCCGGG	1 cut(s)	816
TspRI	CASTG	5 cut(s)	337, 618, 915, 1008, 1253
VpaK11BI	GGWCC	1 cut(s)	801
VspI	ATTAAT	1 cut(s)	576
XagI	CCTNNNNNAGG	1 cut(s)	809
XapI	RAATTY	2 cut(s)	106, 899
XceI	RCATGY	1 cut(s)	836
XhoI	CTCGAG	1 cut(s)	1010
XmaI	CCCGGG	1 cut(s)	816
XmiI	GTMKAC	1 cut(s)	781
XspI	CTAG	4 cut(s)	68, 206, 624, 684
Zsp2I	ATGCAT	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.