Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 516 |
| AccI | GTMKAC | 1 cut(s) | 166 |
| AciI | CCGC | 9 cut(s) | 7, 10, 13, 16, 75, 110, 158, 222, 516 |
| AclWI | GGATC | 2 cut(s) | 120, 705 |
| AcsI | RAATTY | 1 cut(s) | 661 |
| AcuI | CTGAAG | 1 cut(s) | 333 |
| AflIII | ACRYGT | 1 cut(s) | 611 |
| AgsI | TTSAA | 4 cut(s) | 320, 439, 572, 661 |
| AlwI | GGATC | 2 cut(s) | 120, 705 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 330 |
| AoxI | GGCC | 1 cut(s) | 102 |
| ApoI | RAATTY | 1 cut(s) | 661 |
| AspLEI | GCGC | 1 cut(s) | 73 |
| AspS9I | GGNCC | 3 cut(s) | 90, 464, 487 |
| AsuHPI | GGTGA | 1 cut(s) | 254 |
| AvaII | GGWCC | 3 cut(s) | 90, 464, 487 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 286, 319 |
| BclI | TGATCA | 1 cut(s) | 559 |
| BfaI | CTAG | 2 cut(s) | 300, 350 |
| BisI | GCNGC | 3 cut(s) | 8, 11, 14 |
| BlsI | GCNGC | 3 cut(s) | 9, 12, 15 |
| Bme18I | GGWCC | 3 cut(s) | 90, 464, 487 |
| BmgT120I | GGNCC | 3 cut(s) | 90, 464, 487 |
| BmsI | GCATC | 1 cut(s) | 657 |
| BsaJI | CCNNGG | 2 cut(s) | 490, 725 |
| Bse1I | ACTGG | 2 cut(s) | 466, 699 |
| BseDI | CCNNGG | 2 cut(s) | 490, 725 |
| BseGI | GGATG | 1 cut(s) | 198 |
| BseMII | CTCAG | 1 cut(s) | 482 |
| BseNI | ACTGG | 2 cut(s) | 466, 699 |
| BshFI | GGCC | 1 cut(s) | 104 |
| BslFI | GGGAC | 1 cut(s) | 705 |
| BsmFI | GGGAC | 1 cut(s) | 705 |
| BsmI | GAATGC | 1 cut(s) | 33 |
| BsnI | GGCC | 1 cut(s) | 104 |
| Bsp143I | GATC | 4 cut(s) | 112, 496, 559, 697 |
| BspACI | CCGC | 9 cut(s) | 7, 10, 13, 16, 75, 110, 158, 222, 516 |
| BspANI | GGCC | 1 cut(s) | 104 |
| BspCNI | CTCAG | 1 cut(s) | 481 |
| BspPI | GGATC | 2 cut(s) | 120, 705 |
| BsrBI | CCGCTC | 1 cut(s) | 516 |
| BsrI | ACTGG | 2 cut(s) | 466, 699 |
| BssECI | CCNNGG | 2 cut(s) | 490, 725 |
| BssMI | GATC | 4 cut(s) | 112, 496, 559, 697 |
| BssT1I | CCWWGG | 2 cut(s) | 490, 725 |
| Bst4CI | ACNGT | 1 cut(s) | 681 |
| Bst6I | CTCTTC | 2 cut(s) | 264, 544 |
| BstC8I | GCNNGC | 1 cut(s) | 75 |
| BstDEI | CTNAG | 1 cut(s) | 468 |
| BstF5I | GGATG | 1 cut(s) | 198 |
| BstHHI | GCGC | 1 cut(s) | 73 |
| BstKTI | GATC | 4 cut(s) | 115, 499, 562, 700 |
| BstMBI | GATC | 4 cut(s) | 112, 496, 559, 697 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 13, 68 |
| BstNSI | RCATGY | 1 cut(s) | 615 |
| BstX2I | RGATCY | 1 cut(s) | 112 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 726 |
| BstYI | RGATCY | 1 cut(s) | 112 |
| BsuRI | GGCC | 1 cut(s) | 104 |
| BtsCI | GGATG | 1 cut(s) | 198 |
| BtsI | GCAGTG | 1 cut(s) | 553 |
| BtsIMutI | CAGTG | 3 cut(s) | 240, 476, 553 |
| Cac8I | GCNNGC | 1 cut(s) | 75 |
| CaiI | CAGNNNCTG | 1 cut(s) | 330 |
| CfoI | GCGC | 1 cut(s) | 73 |
| Cfr13I | GGNCC | 3 cut(s) | 90, 464, 487 |
| CviAII | CATG | 3 cut(s) | 87, 557, 612 |
| CviJI | RGCY | 3 cut(s) | 62, 104, 566 |
| CviKI_1 | RGCY | 3 cut(s) | 62, 104, 566 |
| DdeI | CTNAG | 1 cut(s) | 468 |
| DpnI | GATC | 4 cut(s) | 114, 498, 561, 699 |
| DpnII | GATC | 4 cut(s) | 112, 496, 559, 697 |
| Eam1104I | CTCTTC | 2 cut(s) | 264, 544 |
| EarI | CTCTTC | 2 cut(s) | 264, 544 |
| EciI | GGCGGA | 1 cut(s) | 237 |
| Eco130I | CCWWGG | 2 cut(s) | 490, 725 |
| Eco47I | GGWCC | 3 cut(s) | 90, 464, 487 |
| Eco57I | CTGAAG | 1 cut(s) | 333 |
| EcoT14I | CCWWGG | 2 cut(s) | 490, 725 |
| ErhI | CCWWGG | 2 cut(s) | 490, 725 |
| FaeI | CATG | 3 cut(s) | 90, 560, 615 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 386, 418 |
| FaqI | GGGAC | 1 cut(s) | 705 |
| FatI | CATG | 3 cut(s) | 86, 556, 611 |
| FauI | CCCGC | 2 cut(s) | 82, 509 |
| FbaI | TGATCA | 1 cut(s) | 559 |
| FblI | GTMKAC | 1 cut(s) | 166 |
| Fnu4HI | GCNGC | 3 cut(s) | 8, 11, 14 |
| FokI | GGATG | 1 cut(s) | 185 |
| Fsp4HI | GCNGC | 3 cut(s) | 8, 11, 14 |
| FspBI | CTAG | 2 cut(s) | 300, 350 |
| GlaI | GCGC | 1 cut(s) | 72 |
| GluI | GCNGC | 3 cut(s) | 8, 11, 14 |
| HaeIII | GGCC | 1 cut(s) | 104 |
| HhaI | GCGC | 1 cut(s) | 73 |
| Hin1II | CATG | 3 cut(s) | 90, 560, 615 |
| Hin6I | GCGC | 1 cut(s) | 71 |
| HinP1I | GCGC | 1 cut(s) | 71 |
| HinfI | GANTC | 5 cut(s) | 209, 327, 365, 617, 703 |
| HphI | GGTGA | 1 cut(s) | 254 |
| Hpy166II | GTNNAC | 4 cut(s) | 167, 487, 510, 714 |
| Hpy188I | TCNGA | 4 cut(s) | 313, 364, 384, 702 |
| Hpy188III | TCNNGA | 1 cut(s) | 274 |
| Hpy8I | GTNNAC | 4 cut(s) | 167, 487, 510, 714 |
| HpyAV | CCTTC | 2 cut(s) | 44, 103 |
| HpyCH4III | ACNGT | 1 cut(s) | 681 |
| HpyCH4V | TGCA | 4 cut(s) | 33, 291, 391, 685 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 13, 68 |
| HpyF3I | CTNAG | 1 cut(s) | 468 |
| Hsp92II | CATG | 3 cut(s) | 90, 560, 615 |
| HspAI | GCGC | 1 cut(s) | 71 |
| Ksp22I | TGATCA | 1 cut(s) | 559 |
| Kzo9I | GATC | 4 cut(s) | 112, 496, 559, 697 |
| LmnI | GCTCC | 1 cut(s) | 645 |
| LpnPI | CCDG | 5 cut(s) | 447, 485, 528, 606, 680 |
| LweI | GCATC | 1 cut(s) | 657 |
| MaeI | CTAG | 2 cut(s) | 300, 350 |
| MaeIII | GTNAC | 3 cut(s) | 344, 398, 454 |
| MalI | GATC | 4 cut(s) | 114, 498, 561, 699 |
| MbiI | CCGCTC | 1 cut(s) | 516 |
| MboI | GATC | 4 cut(s) | 112, 496, 559, 697 |
| MboII | GAAGA | 2 cut(s) | 251, 531 |
| MflI | RGATCY | 1 cut(s) | 112 |
| MluCI | AATT | 3 cut(s) | 149, 203, 661 |
| MlyI | GAGTC | 1 cut(s) | 697 |
| MmeI | TCCRAC | 1 cut(s) | 423 |
| MnlI | CCTC | 2 cut(s) | 94, 477 |
| MseI | TTAA | 5 cut(s) | 141, 176, 185, 407, 522 |
| MslI | CAYNNNNRTG | 3 cut(s) | 245, 267, 396 |
| MspA1I | CMGCKG | 1 cut(s) | 77 |
| Mva1269I | GAATGC | 1 cut(s) | 33 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 13, 68 |
| NdeII | GATC | 4 cut(s) | 112, 496, 559, 697 |
| NlaIII | CATG | 3 cut(s) | 90, 560, 615 |
| NmuCI | GTSAC | 1 cut(s) | 398 |
| NspI | RCATGY | 1 cut(s) | 615 |
| PciI | ACATGT | 1 cut(s) | 611 |
| PctI | GAATGC | 1 cut(s) | 33 |
| PfeI | GAWTC | 4 cut(s) | 209, 327, 365, 617 |
| PkrI | GCNGC | 3 cut(s) | 9, 12, 15 |
| PleI | GAGTC | 1 cut(s) | 697 |
| PpsI | GAGTC | 1 cut(s) | 697 |
| PscI | ACATGT | 1 cut(s) | 611 |
| PspPI | GGNCC | 3 cut(s) | 90, 464, 487 |
| PstNI | CAGNNNCTG | 1 cut(s) | 330 |
| PsuI | RGATCY | 1 cut(s) | 112 |
| RseI | CAYNNNNRTG | 3 cut(s) | 245, 267, 396 |
| SaqAI | TTAA | 5 cut(s) | 141, 176, 185, 407, 522 |
| SatI | GCNGC | 3 cut(s) | 8, 11, 14 |
| Sau3AI | GATC | 4 cut(s) | 112, 496, 559, 697 |
| Sau96I | GGNCC | 3 cut(s) | 90, 464, 487 |
| SchI | GAGTC | 1 cut(s) | 697 |
| SetI | ASST | 9 cut(s) | 55, 95, 166, 236, 351, 361, 492, 504, 658 |
| SfaNI | GCATC | 1 cut(s) | 657 |
| SinI | GGWCC | 3 cut(s) | 90, 464, 487 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 245, 267, 396 |
| Sse9I | AATT | 3 cut(s) | 149, 203, 661 |
| SsiI | CCGC | 9 cut(s) | 7, 10, 13, 16, 75, 110, 158, 222, 516 |
| SspMI | CTAG | 2 cut(s) | 300, 350 |
| StyI | CCWWGG | 2 cut(s) | 490, 725 |
| TaaI | ACNGT | 1 cut(s) | 681 |
| TaqI | TCGA | 1 cut(s) | 273 |
| TasI | AATT | 3 cut(s) | 149, 203, 661 |
| TauI | GCSGC | 3 cut(s) | 10, 13, 16 |
| TfiI | GAWTC | 4 cut(s) | 209, 327, 365, 617 |
| Tru1I | TTAA | 5 cut(s) | 141, 176, 185, 407, 522 |
| Tru9I | TTAA | 5 cut(s) | 141, 176, 185, 407, 522 |
| TscAI | CASTG | 3 cut(s) | 247, 476, 553 |
| TseFI | GTSAC | 1 cut(s) | 398 |
| Tsp45I | GTSAC | 1 cut(s) | 398 |
| TspDTI | ATGAA | 3 cut(s) | 218, 523, 621 |
| TspRI | CASTG | 3 cut(s) | 247, 476, 553 |
| VpaK11BI | GGWCC | 3 cut(s) | 90, 464, 487 |
| XapI | RAATTY | 1 cut(s) | 661 |
| XceI | RCATGY | 1 cut(s) | 615 |
| XmiI | GTMKAC | 1 cut(s) | 166 |
| XspI | CTAG | 2 cut(s) | 300, 350 |