Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1193 |
| AccII | CGCG | 1 cut(s) | 1531 |
| AciI | CCGC | 4 cut(s) | 238, 591, 831, 879 |
| AclWI | GGATC | 1 cut(s) | 853 |
| AcoI | YGGCCR | 1 cut(s) | 1434 |
| AcsI | RAATTY | 3 cut(s) | 274, 1004, 1131 |
| AcuI | CTGAAG | 2 cut(s) | 366, 499 |
| AcyI | GRCGYC | 1 cut(s) | 676 |
| AfaI | GTAC | 4 cut(s) | 76, 396, 817, 1148 |
| AfeI | AGCGCT | 1 cut(s) | 168 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 779 |
| AgsI | TTSAA | 4 cut(s) | 769, 1267, 1351, 1475 |
| AjnI | CCWGG | 2 cut(s) | 299, 962 |
| AluBI | AGCT | 5 cut(s) | 244, 938, 1104, 1231, 1572 |
| AluI | AGCT | 5 cut(s) | 244, 938, 1104, 1231, 1572 |
| Alw21I | GWGCWC | 1 cut(s) | 787 |
| Alw26I | GTCTC | 2 cut(s) | 513, 1424 |
| AlwI | GGATC | 1 cut(s) | 853 |
| Ama87I | CYCGRG | 1 cut(s) | 786 |
| Aor51HI | AGCGCT | 1 cut(s) | 168 |
| AoxI | GGCC | 5 cut(s) | 60, 569, 928, 947, 1434 |
| ApeKI | GCWGC | 2 cut(s) | 315, 1028 |
| ApoI | RAATTY | 3 cut(s) | 274, 1004, 1131 |
| AseI | ATTAAT | 1 cut(s) | 1254 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 339 |
| AspA2I | CCTAGG | 1 cut(s) | 1402 |
| AspLEI | GCGC | 1 cut(s) | 169 |
| AspS9I | GGNCC | 4 cut(s) | 25, 966, 1094, 1387 |
| AsuHPI | GGTGA | 3 cut(s) | 494, 1178, 1418 |
| AsuNHI | GCTAGC | 1 cut(s) | 911 |
| AvaI | CYCGRG | 1 cut(s) | 786 |
| AvaII | GGWCC | 4 cut(s) | 25, 966, 1094, 1387 |
| AvrII | CCTAGG | 1 cut(s) | 1402 |
| AxyI | CCTNAGG | 1 cut(s) | 1142 |
| BanII | GRGCYC | 1 cut(s) | 1114 |
| BbsI | GAAGAC | 1 cut(s) | 1595 |
| Bbv12I | GWGCWC | 1 cut(s) | 787 |
| BbvI | GCAGC | 2 cut(s) | 327, 1015 |
| BccI | CCATC | 3 cut(s) | 643, 808, 1007 |
| BceAI | ACGGC | 1 cut(s) | 1449 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1506, 1540 |
| BciT130I | CCWGG | 2 cut(s) | 301, 964 |
| BcoDI | GTCTC | 2 cut(s) | 513, 1424 |
| BfaI | CTAG | 7 cut(s) | 102, 150, 912, 1121, 1205, 1403, 1452 |
| BfmI | CTRYAG | 1 cut(s) | 951 |
| BfoI | RGCGCY | 1 cut(s) | 170 |
| BglII | AGATCT | 1 cut(s) | 37 |
| BisI | GCNGC | 3 cut(s) | 238, 316, 1029 |
| BlnI | CCTAGG | 1 cut(s) | 1402 |
| BlsI | GCNGC | 3 cut(s) | 239, 317, 1030 |
| BmcAI | AGTACT | 1 cut(s) | 817 |
| Bme1390I | CCNGG | 2 cut(s) | 301, 964 |
| Bme18I | GGWCC | 4 cut(s) | 25, 966, 1094, 1387 |
| BmeT110I | CYCGRG | 1 cut(s) | 786 |
| BmgT120I | GGNCC | 4 cut(s) | 25, 966, 1094, 1387 |
| BmiI | GGNNCC | 4 cut(s) | 298, 968, 1096, 1388 |
| BmrFI | CCNGG | 2 cut(s) | 301, 964 |
| BmsI | GCATC | 6 cut(s) | 327, 389, 783, 1069, 1204, 1526 |
| BmtI | GCTAGC | 1 cut(s) | 915 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1374 |
| BpiI | GAAGAC | 1 cut(s) | 1595 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1573 |
| BpuEI | CTTGAG | 1 cut(s) | 548 |
| BsaHI | GRCGYC | 1 cut(s) | 676 |
| BsaI | GGTCTC | 1 cut(s) | 513 |
| BsaJI | CCNNGG | 1 cut(s) | 1402 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1150, 1180 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 779 |
| Bse1I | ACTGG | 3 cut(s) | 82, 482, 813 |
| Bse21I | CCTNAGG | 1 cut(s) | 1142 |
| BseBI | CCWGG | 2 cut(s) | 301, 964 |
| BseDI | CCNNGG | 1 cut(s) | 1402 |
| BseGI | GGATG | 7 cut(s) | 478, 654, 800, 972, 1018, 1071, 1446 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 779 |
| BseMII | CTCAG | 3 cut(s) | 530, 936, 1133 |
| BseNI | ACTGG | 3 cut(s) | 82, 482, 813 |
| BseXI | GCAGC | 2 cut(s) | 327, 1015 |
| BsgI | GTGCAG | 1 cut(s) | 964 |
| Bsh1236I | CGCG | 1 cut(s) | 1531 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1375 |
| BshFI | GGCC | 5 cut(s) | 62, 571, 930, 949, 1436 |
| BsiEI | CGRYCG | 1 cut(s) | 1375 |
| BsiHKAI | GWGCWC | 1 cut(s) | 787 |
| BsiHKCI | CYCGRG | 1 cut(s) | 786 |
| BslFI | GGGAC | 1 cut(s) | 1080 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 779 |
| BsmAI | GTCTC | 2 cut(s) | 513, 1424 |
| BsmBI | CGTCTC | 1 cut(s) | 1424 |
| BsmFI | GGGAC | 1 cut(s) | 1080 |
| BsnI | GGCC | 5 cut(s) | 62, 571, 930, 949, 1436 |
| Bso31I | GGTCTC | 1 cut(s) | 513 |
| BsoBI | CYCGRG | 1 cut(s) | 786 |
| Bsp1286I | GDGCHC | 2 cut(s) | 787, 1114 |
| BspACI | CCGC | 4 cut(s) | 238, 591, 831, 879 |
| BspANI | GGCC | 5 cut(s) | 62, 571, 930, 949, 1436 |
| BspCNI | CTCAG | 3 cut(s) | 531, 935, 1134 |
| BspFNI | CGCG | 1 cut(s) | 1531 |
| BspHI | TCATGA | 2 cut(s) | 1456, 1557 |
| BspLI | GGNNCC | 4 cut(s) | 298, 968, 1096, 1388 |
| BspOI | GCTAGC | 1 cut(s) | 915 |
| BspPI | GGATC | 1 cut(s) | 853 |
| BspTNI | GGTCTC | 1 cut(s) | 513 |
| BsrI | ACTGG | 3 cut(s) | 82, 482, 813 |
| BssECI | CCNNGG | 1 cut(s) | 1402 |
| BssNI | GRCGYC | 1 cut(s) | 676 |
| BssT1I | CCWWGG | 1 cut(s) | 1402 |
| Bst2UI | CCWGG | 2 cut(s) | 301, 964 |
| Bst4CI | ACNGT | 5 cut(s) | 1060, 1310, 1367, 1484, 1586 |
| BstACI | GRCGYC | 1 cut(s) | 676 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1214 |
| BstC8I | GCNNGC | 5 cut(s) | 242, 426, 472, 913, 947 |
| BstDEI | CTNAG | 6 cut(s) | 539, 922, 1142, 1332, 1424, 1573 |
| BstF5I | GGATG | 7 cut(s) | 478, 654, 800, 972, 1018, 1071, 1446 |
| BstFNI | CGCG | 1 cut(s) | 1531 |
| BstH2I | RGCGCY | 1 cut(s) | 170 |
| BstHHI | GCGC | 1 cut(s) | 169 |
| BstMAI | GTCTC | 2 cut(s) | 513, 1424 |
| BstMCI | CGRYCG | 1 cut(s) | 1375 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 155, 164, 321, 927, 1126, 1214, 1277, 1514 |
| BstNI | CCWGG | 2 cut(s) | 301, 964 |
| BstNSI | RCATGY | 1 cut(s) | 1129 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1374 |
| BstSCI | CCNGG | 2 cut(s) | 299, 962 |
| BstSFI | CTRYAG | 1 cut(s) | 951 |
| BstUI | CGCG | 1 cut(s) | 1531 |
| BstV1I | GCAGC | 2 cut(s) | 327, 1015 |
| BstV2I | GAAGAC | 1 cut(s) | 1595 |
| BstX2I | RGATCY | 2 cut(s) | 37, 845 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1650 |
| BstYI | RGATCY | 2 cut(s) | 37, 845 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1142 |
| BsuRI | GGCC | 5 cut(s) | 62, 571, 930, 949, 1436 |
| BtsCI | GGATG | 7 cut(s) | 478, 654, 800, 972, 1018, 1071, 1446 |
| BtsI | GCAGTG | 1 cut(s) | 414 |
| BtsIMutI | CAGTG | 3 cut(s) | 414, 489, 1372 |
| Cac8I | GCNNGC | 5 cut(s) | 242, 426, 472, 913, 947 |
| CciI | TCATGA | 2 cut(s) | 1456, 1557 |
| CfoI | GCGC | 1 cut(s) | 169 |
| Cfr13I | GGNCC | 4 cut(s) | 25, 966, 1094, 1387 |
| CseI | GACGC | 1 cut(s) | 665 |
| Csp6I | GTAC | 4 cut(s) | 75, 395, 816, 1147 |
| CviQI | GTAC | 4 cut(s) | 75, 395, 816, 1147 |
| DdeI | CTNAG | 6 cut(s) | 539, 922, 1142, 1332, 1424, 1573 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1193 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1193 |
| EaeI | YGGCCR | 1 cut(s) | 1434 |
| Eco130I | CCWWGG | 1 cut(s) | 1402 |
| Eco147I | AGGCCT | 1 cut(s) | 949 |
| Eco24I | GRGCYC | 1 cut(s) | 1114 |
| Eco31I | GGTCTC | 1 cut(s) | 513 |
| Eco32I | GATATC | 2 cut(s) | 48, 352 |
| Eco47I | GGWCC | 4 cut(s) | 25, 966, 1094, 1387 |
| Eco47III | AGCGCT | 1 cut(s) | 168 |
| Eco57I | CTGAAG | 2 cut(s) | 366, 499 |
| Eco81I | CCTNAGG | 1 cut(s) | 1142 |
| Eco88I | CYCGRG | 1 cut(s) | 786 |
| EcoRI | GAATTC | 2 cut(s) | 1004, 1131 |
| EcoRII | CCWGG | 2 cut(s) | 299, 962 |
| EcoRV | GATATC | 2 cut(s) | 48, 352 |
| EcoT14I | CCWWGG | 1 cut(s) | 1402 |
| EcoT38I | GRGCYC | 1 cut(s) | 1114 |
| ErhI | CCWWGG | 1 cut(s) | 1402 |
| Esp3I | CGTCTC | 1 cut(s) | 1424 |
| FaqI | GGGAC | 1 cut(s) | 1080 |
| FauI | CCCGC | 2 cut(s) | 598, 824 |
| Fnu4HI | GCNGC | 3 cut(s) | 238, 316, 1029 |
| FokI | GGATG | 7 cut(s) | 465, 661, 787, 959, 1025, 1058, 1433 |
| FriOI | GRGCYC | 1 cut(s) | 1114 |
| Fsp4HI | GCNGC | 3 cut(s) | 238, 316, 1029 |
| FspBI | CTAG | 7 cut(s) | 102, 150, 912, 1121, 1205, 1403, 1452 |
| GlaI | GCGC | 1 cut(s) | 168 |
| GluI | GCNGC | 3 cut(s) | 238, 316, 1029 |
| HaeII | RGCGCY | 1 cut(s) | 170 |
| HaeIII | GGCC | 5 cut(s) | 62, 571, 930, 949, 1436 |
| HgaI | GACGC | 1 cut(s) | 665 |
| HhaI | GCGC | 1 cut(s) | 169 |
| Hin1I | GRCGYC | 1 cut(s) | 676 |
| Hin6I | GCGC | 1 cut(s) | 167 |
| HinP1I | GCGC | 1 cut(s) | 167 |
| HincII | GTYRAC | 2 cut(s) | 436, 1399 |
| HindII | GTYRAC | 2 cut(s) | 436, 1399 |
| HindIII | AAGCTT | 1 cut(s) | 1570 |
| HinfI | GANTC | 4 cut(s) | 220, 541, 769, 984 |
| HphI | GGTGA | 3 cut(s) | 494, 1178, 1418 |
| Hpy166II | GTNNAC | 3 cut(s) | 436, 1399, 1638 |
| Hpy188I | TCNGA | 5 cut(s) | 334, 388, 518, 540, 774 |
| Hpy188III | TCNNGA | 9 cut(s) | 224, 247, 344, 565, 680, 766, 1141, 1457, 1558 |
| Hpy8I | GTNNAC | 3 cut(s) | 436, 1399, 1638 |
| Hpy99I | CGWCG | 1 cut(s) | 1531 |
| HpyAV | CCTTC | 6 cut(s) | 112, 255, 304, 516, 862, 974 |
| HpyCH4III | ACNGT | 5 cut(s) | 1060, 1310, 1367, 1484, 1586 |
| HpyCH4IV | ACGT | 2 cut(s) | 1303, 1579 |
| HpyCH4V | TGCA | 8 cut(s) | 358, 370, 402, 721, 837, 945, 1031, 1201 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 155, 164, 321, 927, 1126, 1214, 1277, 1514 |
| HpyF3I | CTNAG | 6 cut(s) | 539, 922, 1142, 1332, 1424, 1573 |
| HpySE526I | ACGT | 2 cut(s) | 1303, 1579 |
| Hsp92I | GRCGYC | 1 cut(s) | 676 |
| HspAI | GCGC | 1 cut(s) | 167 |
| LmnI | GCTCC | 3 cut(s) | 828, 1228, 1357 |
| Lsp1109I | GCAGC | 2 cut(s) | 327, 1015 |
| LweI | GCATC | 6 cut(s) | 327, 389, 783, 1069, 1204, 1526 |
| MaeI | CTAG | 7 cut(s) | 102, 150, 912, 1121, 1205, 1403, 1452 |
| MaeII | ACGT | 2 cut(s) | 1303, 1579 |
| MaeIII | GTNAC | 6 cut(s) | 280, 1184, 1304, 1310, 1367, 1580 |
| MboII | GAAGA | 5 cut(s) | 282, 359, 840, 1435, 1595 |
| MfeI | CAATTG | 2 cut(s) | 444, 636 |
| MflI | RGATCY | 2 cut(s) | 37, 845 |
| MhlI | GDGCHC | 2 cut(s) | 787, 1114 |
| MlyI | GAGTC | 2 cut(s) | 214, 550 |
| MmeI | TCCRAC | 2 cut(s) | 626, 1335 |
| MroXI | GAANNNNTTC | 1 cut(s) | 339 |
| MseI | TTAA | 5 cut(s) | 129, 864, 1046, 1055, 1254 |
| MslI | CAYNNNNRTG | 2 cut(s) | 832, 1365 |
| MspR9I | CCNGG | 2 cut(s) | 301, 964 |
| MunI | CAATTG | 2 cut(s) | 444, 636 |
| MvaI | CCWGG | 2 cut(s) | 301, 964 |
| MvnI | CGCG | 1 cut(s) | 1531 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 155, 164, 321, 927, 1126, 1214, 1277, 1514 |
| NheI | GCTAGC | 1 cut(s) | 911 |
| NlaIV | GGNNCC | 4 cut(s) | 298, 968, 1096, 1388 |
| NmuCI | GTSAC | 3 cut(s) | 1184, 1304, 1367 |
| NspI | RCATGY | 1 cut(s) | 1129 |
| PaeR7I | CTCGAG | 1 cut(s) | 786 |
| PagI | TCATGA | 2 cut(s) | 1456, 1557 |
| PceI | AGGCCT | 1 cut(s) | 949 |
| PdmI | GAANNNNTTC | 1 cut(s) | 339 |
| PfeI | GAWTC | 2 cut(s) | 769, 984 |
| PfoI | TCCNGGA | 2 cut(s) | 299, 962 |
| PkrI | GCNGC | 3 cut(s) | 239, 317, 1030 |
| Ple19I | CGATCG | 1 cut(s) | 1375 |
| PleI | GAGTC | 2 cut(s) | 214, 549 |
| PpsI | GAGTC | 2 cut(s) | 214, 549 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1374 |
| PshBI | ATTAAT | 1 cut(s) | 1254 |
| Psp6I | CCWGG | 2 cut(s) | 299, 962 |
| PspGI | CCWGG | 2 cut(s) | 299, 962 |
| PspN4I | GGNNCC | 4 cut(s) | 298, 968, 1096, 1388 |
| PspPI | GGNCC | 4 cut(s) | 25, 966, 1094, 1387 |
| PspXI | VCTCGAGB | 1 cut(s) | 786 |
| PsuI | RGATCY | 2 cut(s) | 37, 845 |
| PvuI | CGATCG | 1 cut(s) | 1375 |
| RsaI | GTAC | 4 cut(s) | 76, 396, 817, 1148 |
| RsaNI | GTAC | 4 cut(s) | 75, 395, 816, 1147 |
| RseI | CAYNNNNRTG | 2 cut(s) | 832, 1365 |
| SaqAI | TTAA | 5 cut(s) | 129, 864, 1046, 1055, 1254 |
| SatI | GCNGC | 3 cut(s) | 238, 316, 1029 |
| Sau96I | GGNCC | 4 cut(s) | 25, 966, 1094, 1387 |
| ScaI | AGTACT | 1 cut(s) | 817 |
| SchI | GAGTC | 2 cut(s) | 214, 550 |
| ScrFI | CCNGG | 2 cut(s) | 301, 964 |
| SduI | GDGCHC | 2 cut(s) | 787, 1114 |
| SfaNI | GCATC | 6 cut(s) | 327, 389, 783, 1069, 1204, 1526 |
| SfcI | CTRYAG | 1 cut(s) | 951 |
| Sfr274I | CTCGAG | 1 cut(s) | 786 |
| SinI | GGWCC | 4 cut(s) | 25, 966, 1094, 1387 |
| SlaI | CTCGAG | 1 cut(s) | 786 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 832, 1365 |
| SmlI | CTYRAG | 2 cut(s) | 563, 786 |
| SmoI | CTYRAG | 2 cut(s) | 563, 786 |
| SseBI | AGGCCT | 1 cut(s) | 949 |
| SsiI | CCGC | 4 cut(s) | 238, 591, 831, 879 |
| SspI | AATATT | 2 cut(s) | 11, 1416 |
| SspMI | CTAG | 7 cut(s) | 102, 150, 912, 1121, 1205, 1403, 1452 |
| StuI | AGGCCT | 1 cut(s) | 949 |
| StyD4I | CCNGG | 2 cut(s) | 299, 962 |
| StyI | CCWWGG | 1 cut(s) | 1402 |
| TaaI | ACNGT | 5 cut(s) | 1060, 1310, 1367, 1484, 1586 |
| TaiI | ACGT | 2 cut(s) | 1306, 1582 |
| TaqI | TCGA | 7 cut(s) | 225, 248, 787, 1342, 1411, 1500, 1624 |
| TatI | WGTACW | 1 cut(s) | 815 |
| TauI | GCSGC | 1 cut(s) | 240 |
| TfiI | GAWTC | 2 cut(s) | 769, 984 |
| Tru1I | TTAA | 5 cut(s) | 129, 864, 1046, 1055, 1254 |
| Tru9I | TTAA | 5 cut(s) | 129, 864, 1046, 1055, 1254 |
| TscAI | CASTG | 3 cut(s) | 414, 489, 1372 |
| TseFI | GTSAC | 3 cut(s) | 1184, 1304, 1367 |
| TseI | GCWGC | 2 cut(s) | 315, 1028 |
| Tsp45I | GTSAC | 3 cut(s) | 1184, 1304, 1367 |
| TspDTI | ATGAA | 5 cut(s) | 626, 993, 997, 1435, 1546 |
| TspGWI | ACGGA | 1 cut(s) | 1560 |
| TspRI | CASTG | 3 cut(s) | 414, 489, 1372 |
| VpaK11BI | GGWCC | 4 cut(s) | 25, 966, 1094, 1387 |
| VspI | ATTAAT | 1 cut(s) | 1254 |
| XapI | RAATTY | 3 cut(s) | 274, 1004, 1131 |
| XceI | RCATGY | 1 cut(s) | 1129 |
| XhoI | CTCGAG | 1 cut(s) | 786 |
| XmaJI | CCTAGG | 1 cut(s) | 1402 |
| XmnI | GAANNNNTTC | 1 cut(s) | 339 |
| XspI | CTAG | 7 cut(s) | 102, 150, 912, 1121, 1205, 1403, 1452 |
| ZrmI | AGTACT | 1 cut(s) | 817 |