Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035493.1

Orthogroup ID

OG0000142

Physical Location & Seq

Genomic Coordinates Forward (+)

1185 .. 2148

Gene Structure 964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035493.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

atgtcaatgtcaaaaatgaagaaggagaagggggacgataggtggtcaaacggactgccaaaacatgtcttgcaattgatacccgaacggctacagatatcagattaccgatcctttcgccatgtctgcctttcttggcgaggtgtgattgaggatgttaacaccggggtggtcaacttcttcttcaatgcaatatcgggtggccgagtcatacttccatcacaatccacaattcaaagccacctttgcaacgagctctttttctccaagaaagtggtggcatcttctaacccagatgctcaacaaccgcaggactgtcttgttgcgggcgttagttgtgacggtttattggctatttgtaggccgactgatgcatcgtggagcctcattaaaatagacgggctcaggtctagagatatagaaataattgatgaaaaattgtacgctattactcaaatccacatctccgagtatatagtggtgtataagacccgccctacagatgccggtggcattagagcagaaatggttttgttcagcatactccctagtattaatcattggaaatggagaacttgttgtctagcaaaatattctgagaccaaggagttagttgtgattttgtgcaggattccagtcaagtgccaaagtcacagggaaggactcttccgagtattcaagccggagtctagcctcactcatagacctactcttggtgctcgatcgttgggcggaggtcgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010468 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030684 GO:0030686 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070545 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904 GO:2000232

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT_2 Pescadillo_N

Protein Analysis

247

Amino Acids

27.83

Weight (kDa)

9.17

Isoelectric Point (pI)

57.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000142)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica	MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica	Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis	pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis	RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata	RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora	Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa	Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha	Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana	Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	308, 326, 493, 732
AclWI	GGATC	1 cut(s)	105
AcoI	YGGCCR	1 cut(s)	202
AfaI	GTAC	1 cut(s)	443
AfiI	CCNNNNNNNGG	1 cut(s)	713
AflIII	ACRYGT	1 cut(s)	64
AgsI	TTSAA	3 cut(s)	187, 236, 679
AleI	CACNNNNGTG	1 cut(s)	167
AluBI	AGCT	1 cut(s)	256
AluI	AGCT	1 cut(s)	256
Alw21I	GWGCWC	2 cut(s)	258, 721
Alw26I	GTCTC	1 cut(s)	593
AlwI	GGATC	1 cut(s)	105
AoxI	GGCC	2 cut(s)	202, 362
AseI	ATTAAT	1 cut(s)	555
AsuC2I	CCSGG	1 cut(s)	166
BanII	GRGCYC	2 cut(s)	258, 405
Bbv12I	GWGCWC	2 cut(s)	258, 721
BccI	CCATC	1 cut(s)	226
BceAI	ACGGC	1 cut(s)	104
BcnI	CCSGG	1 cut(s)	166
BcoDI	GTCTC	1 cut(s)	593
BfaI	CTAG	4 cut(s)	411, 549, 584, 690
BfmI	CTRYAG	2 cut(s)	92, 498
Bme1390I	CCNGG	1 cut(s)	166
BmiI	GGNNCC	1 cut(s)	383
BmrFI	CCNGG	1 cut(s)	166
BmsI	GCATC	5 cut(s)	286, 290, 361, 383, 493
Bpu10I	CCTNAGC	1 cut(s)	404
BpuMI	CCSGG	1 cut(s)	166
BsaI	GGTCTC	1 cut(s)	593
BsaJI	CCNNGG	2 cut(s)	165, 603
BsaXI	ACNNNNNCTCC	2 cut(s)	562, 592
Bsc4I	CCNNNNNNNGG	1 cut(s)	713
Bse118I	RCCGGY	1 cut(s)	506
Bse1I	ACTGG	1 cut(s)	635
BseDI	CCNNGG	2 cut(s)	165, 603
BseGI	GGATG	1 cut(s)	160
BseLI	CCNNNNNNNGG	1 cut(s)	713
BseMII	CTCAG	2 cut(s)	418, 588
BseNI	ACTGG	1 cut(s)	635
BsgI	GTGCAG	1 cut(s)	646
Bsh1285I	CGRYCG	1 cut(s)	725
BshFI	GGCC	2 cut(s)	204, 364
BsiEI	CGRYCG	1 cut(s)	725
BsiHKAI	GWGCWC	2 cut(s)	258, 721
BsiSI	CCGG	3 cut(s)	165, 507, 683
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	1 cut(s)	713
BsmAI	GTCTC	1 cut(s)	593
BsmFI	GGGAC	1 cut(s)	47
BsnI	GGCC	2 cut(s)	204, 364
Bso31I	GGTCTC	1 cut(s)	593
Bsp1286I	GDGCHC	3 cut(s)	258, 405, 721
Bsp143I	GATC	2 cut(s)	110, 722
BspACI	CCGC	4 cut(s)	308, 326, 493, 732
BspANI	GGCC	2 cut(s)	204, 364
BspCNI	CTCAG	2 cut(s)	417, 589
BspLI	GGNNCC	1 cut(s)	383
BspPI	GGATC	1 cut(s)	105
BspTNI	GGTCTC	1 cut(s)	593
BsrFI	RCCGGY	1 cut(s)	506
BsrI	ACTGG	1 cut(s)	635
BssAI	RCCGGY	1 cut(s)	506
BssECI	CCNNGG	2 cut(s)	165, 603
BssMI	GATC	2 cut(s)	110, 722
BssT1I	CCWWGG	1 cut(s)	603
Bst4CI	ACNGT	2 cut(s)	317, 344
Bst6I	CTCTTC	1 cut(s)	671
BstC8I	GCNNGC	1 cut(s)	328
BstDEI	CTNAG	2 cut(s)	404, 597
BstF5I	GGATG	1 cut(s)	160
BstKTI	GATC	2 cut(s)	113, 725
BstMAI	GTCTC	1 cut(s)	593
BstMBI	GATC	2 cut(s)	110, 722
BstMCI	CGRYCG	1 cut(s)	725
BstMWI	GCNNNNNNNGC	2 cut(s)	126, 246
BstNSI	RCATGY	1 cut(s)	68
BstSCI	CCNGG	1 cut(s)	164
BstSFI	CTRYAG	2 cut(s)	92, 498
BstXI	CCANNNNNNTGG	1 cut(s)	274
BsuRI	GGCC	2 cut(s)	204, 364
BtsCI	GGATG	1 cut(s)	160
Cac8I	GCNNGC	1 cut(s)	328
Cfr10I	RCCGGY	1 cut(s)	506
Csp6I	GTAC	1 cut(s)	442
CviAII	CATG	2 cut(s)	65, 122
CviQI	GTAC	1 cut(s)	442
DdeI	CTNAG	2 cut(s)	404, 597
DpnI	GATC	2 cut(s)	112, 724
DpnII	GATC	2 cut(s)	110, 722
EaeI	YGGCCR	1 cut(s)	202
Eam1104I	CTCTTC	1 cut(s)	671
EarI	CTCTTC	1 cut(s)	671
Ecl136II	GAGCTC	1 cut(s)	256
Eco130I	CCWWGG	1 cut(s)	603
Eco24I	GRGCYC	2 cut(s)	258, 405
Eco31I	GGTCTC	1 cut(s)	593
Eco32I	GATATC	1 cut(s)	99
Eco53kI	GAGCTC	1 cut(s)	256
EcoICRI	GAGCTC	1 cut(s)	256
EcoRV	GATATC	1 cut(s)	99
EcoT14I	CCWWGG	1 cut(s)	603
EcoT22I	ATGCAT	1 cut(s)	376
EcoT38I	GRGCYC	2 cut(s)	258, 405
ErhI	CCWWGG	1 cut(s)	603
FaeI	CATG	2 cut(s)	68, 125
FaiI	YATR	9 cut(s)	66, 123, 212, 419, 474, 476, 486, 542, 702
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	2 cut(s)	64, 121
FauI	CCCGC	2 cut(s)	319, 500
FokI	GGATG	1 cut(s)	167
FriOI	GRGCYC	2 cut(s)	258, 405
FspBI	CTAG	4 cut(s)	411, 549, 584, 690
HaeIII	GGCC	2 cut(s)	204, 364
HapII	CCGG	3 cut(s)	165, 507, 683
Hin1II	CATG	2 cut(s)	68, 125
HincII	GTYRAC	2 cut(s)	160, 175
HindII	GTYRAC	2 cut(s)	160, 175
HinfI	GANTC	4 cut(s)	207, 631, 663, 686
HpaI	GTTAAC	1 cut(s)	160
HpaII	CCGG	3 cut(s)	165, 507, 683
Hpy166II	GTNNAC	2 cut(s)	160, 175
Hpy188I	TCNGA	4 cut(s)	103, 469, 598, 671
Hpy188III	TCNNGA	1 cut(s)	411
Hpy8I	GTNNAC	2 cut(s)	160, 175
HpyAV	CCTTC	3 cut(s)	16, 22, 653
HpyCH4III	ACNGT	2 cut(s)	317, 344
HpyCH4V	TGCA	5 cut(s)	73, 191, 249, 374, 627
HpyF10VI	GCNNNNNNNGC	2 cut(s)	126, 246
HpyF3I	CTNAG	2 cut(s)	404, 597
Hsp92II	CATG	2 cut(s)	68, 125
KspAI	GTTAAC	1 cut(s)	160
Kzo9I	GATC	2 cut(s)	110, 722
LmnI	GCTCC	1 cut(s)	381
LpnPI	CCDG	9 cut(s)	178, 296, 306, 391, 520, 613, 640, 648, 696
LweI	GCATC	5 cut(s)	286, 290, 361, 383, 493
MaeI	CTAG	4 cut(s)	411, 549, 584, 690
MaeIII	GTNAC	2 cut(s)	338, 650
MalI	GATC	2 cut(s)	112, 724
MboI	GATC	2 cut(s)	110, 722
MboII	GAAGA	5 cut(s)	31, 172, 175, 276, 658
MfeI	CAATTG	1 cut(s)	74
MhlI	GDGCHC	3 cut(s)	258, 405, 721
MluCI	AATT	4 cut(s)	74, 231, 426, 437
MlyI	GAGTC	3 cut(s)	216, 657, 695
MnlI	CCTC	5 cut(s)	134, 145, 395, 704, 728
Mph1103I	ATGCAT	1 cut(s)	376
MseI	TTAA	3 cut(s)	159, 390, 555
MslI	CAYNNNNRTG	1 cut(s)	167
MspI	CCGG	3 cut(s)	165, 507, 683
MspR9I	CCNGG	1 cut(s)	166
MunI	CAATTG	1 cut(s)	74
MwoI	GCNNNNNNNGC	2 cut(s)	126, 246
NciI	CCSGG	1 cut(s)	166
NdeII	GATC	2 cut(s)	110, 722
NlaIII	CATG	2 cut(s)	68, 125
NlaIV	GGNNCC	1 cut(s)	383
NmeAIII	GCCGAG	1 cut(s)	230
NmuCI	GTSAC	2 cut(s)	338, 650
NsiI	ATGCAT	1 cut(s)	376
NspI	RCATGY	1 cut(s)	68
OliI	CACNNNNGTG	1 cut(s)	167
PciI	ACATGT	1 cut(s)	64
PfeI	GAWTC	1 cut(s)	631
Ple19I	CGATCG	1 cut(s)	725
PleI	GAGTC	3 cut(s)	215, 657, 694
PpsI	GAGTC	3 cut(s)	215, 657, 694
PscI	ACATGT	1 cut(s)	64
PshBI	ATTAAT	1 cut(s)	555
Psp124BI	GAGCTC	1 cut(s)	258
PspN4I	GGNNCC	1 cut(s)	383
PvuI	CGATCG	1 cut(s)	725
RsaI	GTAC	1 cut(s)	443
RsaNI	GTAC	1 cut(s)	442
RseI	CAYNNNNRTG	1 cut(s)	167
SacI	GAGCTC	1 cut(s)	258
SaqAI	TTAA	3 cut(s)	159, 390, 555
Sau3AI	GATC	2 cut(s)	110, 722
SchI	GAGTC	3 cut(s)	216, 657, 695
ScrFI	CCNGG	1 cut(s)	166
SduI	GDGCHC	3 cut(s)	258, 405, 721
SetI	ASST	7 cut(s)	44, 145, 246, 258, 410, 709, 739
SfaNI	GCATC	5 cut(s)	286, 290, 361, 383, 493
SfcI	CTRYAG	2 cut(s)	92, 498
SmiMI	CAYNNNNRTG	1 cut(s)	167
Sse9I	AATT	4 cut(s)	74, 231, 426, 437
SsiI	CCGC	4 cut(s)	308, 326, 493, 732
SspI	AATATT	1 cut(s)	593
SspMI	CTAG	4 cut(s)	411, 549, 584, 690
SstI	GAGCTC	1 cut(s)	258
StyD4I	CCNGG	1 cut(s)	164
StyI	CCWWGG	1 cut(s)	603
TaaI	ACNGT	2 cut(s)	317, 344
TaqI	TCGA	1 cut(s)	721
TasI	AATT	4 cut(s)	74, 231, 426, 437
TfiI	GAWTC	1 cut(s)	631
Tru1I	TTAA	3 cut(s)	159, 390, 555
Tru9I	TTAA	3 cut(s)	159, 390, 555
TseFI	GTSAC	2 cut(s)	338, 650
Tsp45I	GTSAC	2 cut(s)	338, 650
TspDTI	ATGAA	2 cut(s)	32, 447
TspGWI	ACGGA	1 cut(s)	66
VspI	ATTAAT	1 cut(s)	555
XbaI	TCTAGA	1 cut(s)	410
XceI	RCATGY	1 cut(s)	68
XcmI	CCANNNNNNNNNTGG	1 cut(s)	274
XspI	CTAG	4 cut(s)	411, 549, 584, 690
Zsp2I	ATGCAT	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.