RLG00000020285

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
63239339 .. 63239883
545 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020285

Sequence Viewer

Length: 444 bp
ATGGTTGATCATACCATTGCCACCTTCACTTTAGATCAAGATCATACCACTCTTACTTCTTTCAACTCCTTCTTGAATCCAATATCTACTGCCAGAGTCATGCTACCATCAGAACTCACCATTCCCCCACTGTACGGTAGTATTGATGGTGGACTATCATTCTTGCTTAAAGTAGTAGCCTCTTCGGTACCAACGAGCCCGCACTGCCTTGCTTATTATTCCTGTGGTCGTTTGGCTTTTTGTAGACCCTCCGATAAATCATGGACCATCATTGACGCTGATCTGAGGTCGTTTTTGGAGGATGCCAATGGCGTCGGTGCTCATACCTATACCACTGTGAGGTTAGTTATGCCTTACCCTTGGCCAGTTCCTTCCCGCCCTGCATGGGATGGACGCATGCATGTGAGTAATTCAGAACGAGTGACTTACATATTCAAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

148

Amino Acids

16.34

Weight (kDa)

6.16

Isoelectric Point (pI)

41.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 24 - 101 5.9e-09 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000142)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 187
AccB1I GGYRCC 1 cut(s) 187
AccI GTMKAC 1 cut(s) 244
AciI CCGC 2 cut(s) 200, 376
AcoI YGGCCR 1 cut(s) 362
AcyI GRCGYC 1 cut(s) 312
AfaI GTAC 2 cut(s) 134, 189
AfiI CCNNNNNNNGG 3 cut(s) 134, 339, 385
AgsI TTSAA 3 cut(s) 64, 76, 436
Alw21I GWGCWC 1 cut(s) 322
AoxI GGCC 1 cut(s) 362
Asp718I GGTACC 1 cut(s) 187
AspS9I GGNCC 1 cut(s) 264
AsuHPI GGTGA 1 cut(s) 109
AvaII GGWCC 1 cut(s) 264
BalI TGGCCA 1 cut(s) 364
BanI GGYRCC 1 cut(s) 187
BanII GRGCYC 1 cut(s) 200
Bbv12I GWGCWC 1 cut(s) 322
BccI CCATC 4 cut(s) 115, 140, 275, 383
BclI TGATCA 1 cut(s) 7
Bme18I GGWCC 1 cut(s) 264
BmgT120I GGNCC 1 cut(s) 264
BmiI GGNNCC 1 cut(s) 189
BmsI GCATC 1 cut(s) 292
BsaBI GATNNNNATC 1 cut(s) 39
BsaHI GRCGYC 1 cut(s) 312
BsaJI CCNNGG 1 cut(s) 359
Bsc4I CCNNNNNNNGG 3 cut(s) 134, 339, 385
Bse1I ACTGG 1 cut(s) 365
Bse3DI GCAATG 1 cut(s) 15
Bse8I GATNNNNATC 1 cut(s) 39
BseDI CCNNGG 1 cut(s) 359
BseGI GGATG 2 cut(s) 307, 394
BseJI GATNNNNATC 1 cut(s) 39
BseLI CCNNNNNNNGG 3 cut(s) 134, 339, 385
BseMI GCAATG 1 cut(s) 15
BseMII CTCAG 1 cut(s) 275
BseNI ACTGG 1 cut(s) 365
BshFI GGCC 1 cut(s) 364
BshNI GGYRCC 1 cut(s) 187
BsiHKAI GWGCWC 1 cut(s) 322
BslI CCNNNNNNNGG 3 cut(s) 134, 339, 385
BsnI GGCC 1 cut(s) 364
Bsp1286I GDGCHC 2 cut(s) 200, 322
Bsp143I GATC 4 cut(s) 7, 34, 40, 280
BspACI CCGC 2 cut(s) 200, 376
BspANI GGCC 1 cut(s) 364
BspCNI CTCAG 1 cut(s) 276
BspLI GGNNCC 1 cut(s) 189
BspT107I GGYRCC 1 cut(s) 187
BsrDI GCAATG 1 cut(s) 15
BsrI ACTGG 1 cut(s) 365
BssECI CCNNGG 1 cut(s) 359
BssMI GATC 4 cut(s) 7, 34, 40, 280
BssNI GRCGYC 1 cut(s) 312
BssT1I CCWWGG 1 cut(s) 359
Bst4CI ACNGT 3 cut(s) 132, 137, 337
Bst6I CTCTTC 1 cut(s) 187
BstACI GRCGYC 1 cut(s) 312
BstC8I GCNNGC 2 cut(s) 200, 398
BstDEI CTNAG 1 cut(s) 284
BstF5I GGATG 2 cut(s) 307, 394
BstKTI GATC 4 cut(s) 10, 37, 43, 283
BstMBI GATC 4 cut(s) 7, 34, 40, 280
BstMWI GCNNNNNNNGC 1 cut(s) 204
BstNSI RCATGY 2 cut(s) 400, 404
BsuRI GGCC 1 cut(s) 364
BtsCI GGATG 2 cut(s) 307, 394
BtsI GCAGTG 1 cut(s) 202
BtsIMutI CAGTG 3 cut(s) 128, 202, 333
Cac8I GCNNGC 2 cut(s) 200, 398
Cfr13I GGNCC 1 cut(s) 264
CseI GACGC 3 cut(s) 284, 301, 402
Csp6I GTAC 2 cut(s) 133, 188
CviAII CATG 5 cut(s) 100, 261, 384, 397, 401
CviJI RGCY 4 cut(s) 179, 198, 236, 364
CviKI_1 RGCY 4 cut(s) 179, 198, 236, 364
CviQI GTAC 2 cut(s) 133, 188
DdeI CTNAG 1 cut(s) 284
DpnI GATC 4 cut(s) 9, 36, 42, 282
DpnII GATC 4 cut(s) 7, 34, 40, 280
EaeI YGGCCR 1 cut(s) 362
Eam1104I CTCTTC 1 cut(s) 187
EarI CTCTTC 1 cut(s) 187
Eco130I CCWWGG 1 cut(s) 359
Eco24I GRGCYC 1 cut(s) 200
Eco47I GGWCC 1 cut(s) 264
EcoT14I CCWWGG 1 cut(s) 359
EcoT22I ATGCAT 1 cut(s) 402
EcoT38I GRGCYC 1 cut(s) 200
ErhI CCWWGG 1 cut(s) 359
FaeI CATG 5 cut(s) 103, 264, 387, 400, 404
FatI CATG 5 cut(s) 99, 260, 383, 396, 400
FauI CCCGC 2 cut(s) 207, 383
FbaI TGATCA 1 cut(s) 7
FblI GTMKAC 1 cut(s) 244
FokI GGATG 2 cut(s) 314, 401
FriOI GRGCYC 1 cut(s) 200
HaeIII GGCC 1 cut(s) 364
HgaI GACGC 3 cut(s) 284, 301, 402
Hin1I GRCGYC 1 cut(s) 312
Hin1II CATG 5 cut(s) 103, 264, 387, 400, 404
HinfI GANTC 2 cut(s) 76, 96
HphI GGTGA 1 cut(s) 109
Hpy166II GTNNAC 2 cut(s) 152, 245
Hpy188I TCNGA 4 cut(s) 112, 253, 285, 415
Hpy188III TCNNGA 2 cut(s) 38, 73
Hpy8I GTNNAC 2 cut(s) 152, 245
Hpy99I CGWCG 1 cut(s) 317
HpyAV CCTTC 3 cut(s) 34, 79, 381
HpyCH4III ACNGT 3 cut(s) 132, 137, 337
HpyCH4V TGCA 2 cut(s) 383, 400
HpyF10VI GCNNNNNNNGC 1 cut(s) 204
HpyF3I CTNAG 1 cut(s) 284
Hsp92I GRCGYC 1 cut(s) 312
Hsp92II CATG 5 cut(s) 103, 264, 387, 400, 404
KpnI GGTACC 1 cut(s) 191
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 4 cut(s) 7, 34, 40, 280
LpnPI CCDG 4 cut(s) 106, 235, 378, 393
LweI GCATC 1 cut(s) 292
MaeIII GTNAC 1 cut(s) 421
MalI GATC 4 cut(s) 9, 36, 42, 282
MboI GATC 4 cut(s) 7, 34, 40, 280
MboII GAAGA 1 cut(s) 174
MhlI GDGCHC 2 cut(s) 200, 322
MlsI TGGCCA 1 cut(s) 364
MluCI AATT 1 cut(s) 409
MluNI TGGCCA 1 cut(s) 364
MlyI GAGTC 1 cut(s) 105
MnlI CCTC 5 cut(s) 190, 259, 279, 292, 333
Mox20I TGGCCA 1 cut(s) 364
Mph1103I ATGCAT 1 cut(s) 402
MscI TGGCCA 1 cut(s) 364
MseI TTAA 2 cut(s) 168, 442
MslI CAYNNNNRTG 1 cut(s) 401
Msp20I TGGCCA 1 cut(s) 364
MwoI GCNNNNNNNGC 1 cut(s) 204
NdeII GATC 4 cut(s) 7, 34, 40, 280
NlaIII CATG 5 cut(s) 103, 264, 387, 400, 404
NlaIV GGNNCC 1 cut(s) 189
NmuCI GTSAC 1 cut(s) 421
NsiI ATGCAT 1 cut(s) 402
NspI RCATGY 2 cut(s) 400, 404
PaeI GCATGC 1 cut(s) 400
PcsI WCGNNNNNNNCGW 1 cut(s) 191
PfeI GAWTC 1 cut(s) 76
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
PspN4I GGNNCC 1 cut(s) 189
PspPI GGNCC 1 cut(s) 264
RsaI GTAC 2 cut(s) 134, 189
RsaNI GTAC 2 cut(s) 133, 188
RseI CAYNNNNRTG 1 cut(s) 401
SaqAI TTAA 2 cut(s) 168, 442
Sau3AI GATC 4 cut(s) 7, 34, 40, 280
Sau96I GGNCC 1 cut(s) 264
SchI GAGTC 1 cut(s) 105
SduI GDGCHC 2 cut(s) 200, 322
SetI ASST 4 cut(s) 26, 290, 329, 344
SfaNI GCATC 1 cut(s) 292
SinI GGWCC 1 cut(s) 264
SmiMI CAYNNNNRTG 1 cut(s) 401
SphI GCATGC 1 cut(s) 400
Sse9I AATT 1 cut(s) 409
SsiI CCGC 2 cut(s) 200, 376
StyI CCWWGG 1 cut(s) 359
TaaI ACNGT 3 cut(s) 132, 137, 337
TasI AATT 1 cut(s) 409
TfiI GAWTC 1 cut(s) 76
Tru1I TTAA 2 cut(s) 168, 442
Tru9I TTAA 2 cut(s) 168, 442
TscAI CASTG 3 cut(s) 135, 209, 340
TseFI GTSAC 1 cut(s) 421
Tsp45I GTSAC 1 cut(s) 421
TspRI CASTG 3 cut(s) 135, 209, 340
VpaK11BI GGWCC 1 cut(s) 264
XceI RCATGY 2 cut(s) 400, 404
XmiI GTMKAC 1 cut(s) 244
Zsp2I ATGCAT 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.