Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 583 |
| AccB1I | GGYRCC | 2 cut(s) | 494, 583 |
| AccI | GTMKAC | 1 cut(s) | 646 |
| AccII | CGCG | 3 cut(s) | 81, 124, 220 |
| AciI | CCGC | 3 cut(s) | 37, 110, 596 |
| AclWI | GGATC | 1 cut(s) | 541 |
| AcsI | RAATTY | 1 cut(s) | 713 |
| AcuI | CTGAAG | 1 cut(s) | 636 |
| AfaI | GTAC | 2 cut(s) | 464, 585 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 491, 769 |
| AflIII | ACRYGT | 1 cut(s) | 459 |
| AgsI | TTSAA | 4 cut(s) | 481, 624, 707, 728 |
| AluBI | AGCT | 2 cut(s) | 106, 200 |
| AluI | AGCT | 2 cut(s) | 106, 200 |
| Alw26I | GTCTC | 1 cut(s) | 239 |
| AlwI | GGATC | 1 cut(s) | 541 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 200 |
| ApeKI | GCWGC | 2 cut(s) | 112, 197 |
| ApoI | RAATTY | 1 cut(s) | 713 |
| Asp718I | GGTACC | 1 cut(s) | 583 |
| AspLEI | GCGC | 2 cut(s) | 81, 220 |
| AspS9I | GGNCC | 2 cut(s) | 328, 666 |
| AsuC2I | CCSGG | 1 cut(s) | 771 |
| AsuHPI | GGTGA | 1 cut(s) | 415 |
| AvaII | GGWCC | 2 cut(s) | 328, 666 |
| BanI | GGYRCC | 2 cut(s) | 494, 583 |
| BbvI | GCAGC | 2 cut(s) | 99, 209 |
| BccI | CCATC | 1 cut(s) | 677 |
| BclI | TGATCA | 2 cut(s) | 405, 436 |
| BcnI | CCSGG | 1 cut(s) | 771 |
| BcoDI | GTCTC | 1 cut(s) | 239 |
| BfaI | CTAG | 1 cut(s) | 612 |
| BfmI | CTRYAG | 1 cut(s) | 643 |
| BisI | GCNGC | 2 cut(s) | 113, 198 |
| BlsI | GCNGC | 2 cut(s) | 114, 199 |
| Bme1390I | CCNGG | 1 cut(s) | 771 |
| Bme18I | GGWCC | 2 cut(s) | 328, 666 |
| BmgT120I | GGNCC | 2 cut(s) | 328, 666 |
| BmiI | GGNNCC | 2 cut(s) | 496, 585 |
| BmrFI | CCNGG | 1 cut(s) | 771 |
| BmsI | GCATC | 1 cut(s) | 667 |
| BpuMI | CCSGG | 1 cut(s) | 771 |
| BsaBI | GATNNNNATC | 1 cut(s) | 441 |
| BsaJI | CCNNGG | 1 cut(s) | 251 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 491, 769 |
| Bse1I | ACTGG | 1 cut(s) | 631 |
| Bse3DI | GCAATG | 1 cut(s) | 219 |
| Bse8I | GATNNNNATC | 1 cut(s) | 441 |
| BseDI | CCNNGG | 1 cut(s) | 251 |
| BseGI | GGATG | 1 cut(s) | 791 |
| BseJI | GATNNNNATC | 1 cut(s) | 441 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 491, 769 |
| BseMI | GCAATG | 1 cut(s) | 219 |
| BseMII | CTCAG | 1 cut(s) | 553 |
| BseNI | ACTGG | 1 cut(s) | 631 |
| BseRI | GAGGAG | 2 cut(s) | 86, 231 |
| BseXI | GCAGC | 2 cut(s) | 99, 209 |
| BsgI | GTGCAG | 1 cut(s) | 192 |
| Bsh1236I | CGCG | 3 cut(s) | 81, 124, 220 |
| BshNI | GGYRCC | 2 cut(s) | 494, 583 |
| BsiSI | CCGG | 1 cut(s) | 770 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 491, 769 |
| BsmAI | GTCTC | 1 cut(s) | 239 |
| BsmBI | CGTCTC | 1 cut(s) | 239 |
| Bsp1407I | TGTACA | 1 cut(s) | 462 |
| Bsp143I | GATC | 6 cut(s) | 191, 301, 405, 436, 442, 546 |
| Bsp19I | CCATGG | 1 cut(s) | 251 |
| BspACI | CCGC | 3 cut(s) | 37, 110, 596 |
| BspCNI | CTCAG | 1 cut(s) | 552 |
| BspFNI | CGCG | 3 cut(s) | 81, 124, 220 |
| BspLI | GGNNCC | 2 cut(s) | 496, 585 |
| BspPI | GGATC | 1 cut(s) | 541 |
| BspT107I | GGYRCC | 2 cut(s) | 494, 583 |
| BsrDI | GCAATG | 1 cut(s) | 219 |
| BsrGI | TGTACA | 1 cut(s) | 462 |
| BsrI | ACTGG | 1 cut(s) | 631 |
| BssECI | CCNNGG | 1 cut(s) | 251 |
| BssMI | GATC | 6 cut(s) | 191, 301, 405, 436, 442, 546 |
| BssT1I | CCWWGG | 1 cut(s) | 251 |
| Bst4CI | ACNGT | 4 cut(s) | 51, 433, 602, 670 |
| Bst6I | CTCTTC | 2 cut(s) | 63, 583 |
| BstAUI | TGTACA | 1 cut(s) | 462 |
| BstC8I | GCNNGC | 2 cut(s) | 560, 596 |
| BstDEI | CTNAG | 3 cut(s) | 320, 539, 798 |
| BstDSI | CCRYGG | 1 cut(s) | 251 |
| BstF5I | GGATG | 1 cut(s) | 791 |
| BstFNI | CGCG | 3 cut(s) | 81, 124, 220 |
| BstHHI | GCGC | 2 cut(s) | 81, 220 |
| BstKTI | GATC | 6 cut(s) | 194, 304, 408, 439, 445, 549 |
| BstMAI | GTCTC | 1 cut(s) | 239 |
| BstMBI | GATC | 6 cut(s) | 191, 301, 405, 436, 442, 546 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 112, 121, 409 |
| BstNSI | RCATGY | 1 cut(s) | 463 |
| BstSCI | CCNGG | 1 cut(s) | 769 |
| BstSFI | CTRYAG | 1 cut(s) | 643 |
| BstUI | CGCG | 3 cut(s) | 81, 124, 220 |
| BstV1I | GCAGC | 2 cut(s) | 99, 209 |
| BstX2I | RGATCY | 1 cut(s) | 546 |
| BstYI | RGATCY | 1 cut(s) | 546 |
| BtgI | CCRYGG | 1 cut(s) | 251 |
| BtsCI | GGATG | 1 cut(s) | 791 |
| BtsIMutI | CAGTG | 2 cut(s) | 56, 598 |
| Cac8I | GCNNGC | 2 cut(s) | 560, 596 |
| CaiI | CAGNNNCTG | 1 cut(s) | 200 |
| CfoI | GCGC | 2 cut(s) | 81, 220 |
| Cfr13I | GGNCC | 2 cut(s) | 328, 666 |
| Csp6I | GTAC | 2 cut(s) | 463, 584 |
| CviAII | CATG | 6 cut(s) | 252, 259, 409, 460, 505, 663 |
| CviQI | GTAC | 2 cut(s) | 463, 584 |
| DdeI | CTNAG | 3 cut(s) | 320, 539, 798 |
| DpnI | GATC | 6 cut(s) | 193, 303, 407, 438, 444, 548 |
| DpnII | GATC | 6 cut(s) | 191, 301, 405, 436, 442, 546 |
| Eam1104I | CTCTTC | 2 cut(s) | 63, 583 |
| EarI | CTCTTC | 2 cut(s) | 63, 583 |
| EciI | GGCGGA | 1 cut(s) | 52 |
| Eco130I | CCWWGG | 1 cut(s) | 251 |
| Eco47I | GGWCC | 2 cut(s) | 328, 666 |
| Eco57I | CTGAAG | 1 cut(s) | 636 |
| EcoT14I | CCWWGG | 1 cut(s) | 251 |
| EcoT22I | ATGCAT | 1 cut(s) | 369 |
| ErhI | CCWWGG | 1 cut(s) | 251 |
| Esp3I | CGTCTC | 1 cut(s) | 239 |
| FaeI | CATG | 6 cut(s) | 255, 262, 412, 463, 508, 666 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 35 |
| FatI | CATG | 6 cut(s) | 251, 258, 408, 459, 504, 662 |
| FauI | CCCGC | 2 cut(s) | 117, 603 |
| FbaI | TGATCA | 2 cut(s) | 405, 436 |
| FblI | GTMKAC | 1 cut(s) | 646 |
| Fnu4HI | GCNGC | 2 cut(s) | 113, 198 |
| FokI | GGATG | 1 cut(s) | 778 |
| Fsp4HI | GCNGC | 2 cut(s) | 113, 198 |
| FspBI | CTAG | 1 cut(s) | 612 |
| GlaI | GCGC | 2 cut(s) | 80, 219 |
| GluI | GCNGC | 2 cut(s) | 113, 198 |
| HapII | CCGG | 1 cut(s) | 770 |
| HhaI | GCGC | 2 cut(s) | 81, 220 |
| Hin1II | CATG | 6 cut(s) | 255, 262, 412, 463, 508, 666 |
| Hin6I | GCGC | 2 cut(s) | 79, 218 |
| HinP1I | GCGC | 2 cut(s) | 79, 218 |
| HinfI | GANTC | 4 cut(s) | 130, 281, 316, 518 |
| HpaII | CCGG | 1 cut(s) | 770 |
| HphI | GGTGA | 1 cut(s) | 415 |
| Hpy166II | GTNNAC | 2 cut(s) | 647, 767 |
| Hpy188I | TCNGA | 4 cut(s) | 64, 100, 154, 655 |
| Hpy188III | TCNNGA | 2 cut(s) | 440, 478 |
| Hpy8I | GTNNAC | 2 cut(s) | 647, 767 |
| HpyAV | CCTTC | 2 cut(s) | 192, 660 |
| HpyCH4III | ACNGT | 4 cut(s) | 51, 433, 602, 670 |
| HpyCH4IV | ACGT | 1 cut(s) | 631 |
| HpyCH4V | TGCA | 4 cut(s) | 115, 173, 367, 562 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 112, 121, 409 |
| HpyF3I | CTNAG | 3 cut(s) | 320, 539, 798 |
| HpySE526I | ACGT | 1 cut(s) | 631 |
| Hsp92II | CATG | 6 cut(s) | 255, 262, 412, 463, 508, 666 |
| HspAI | GCGC | 2 cut(s) | 79, 218 |
| KpnI | GGTACC | 1 cut(s) | 587 |
| Ksp22I | TGATCA | 2 cut(s) | 405, 436 |
| Kzo9I | GATC | 6 cut(s) | 191, 301, 405, 436, 442, 546 |
| LmnI | GCTCC | 2 cut(s) | 111, 244 |
| LpnPI | CCDG | 5 cut(s) | 477, 528, 568, 612, 783 |
| Lsp1109I | GCAGC | 2 cut(s) | 99, 209 |
| LweI | GCATC | 1 cut(s) | 667 |
| MaeI | CTAG | 1 cut(s) | 612 |
| MaeII | ACGT | 1 cut(s) | 631 |
| MaeIII | GTNAC | 3 cut(s) | 278, 421, 507 |
| MalI | GATC | 6 cut(s) | 193, 303, 407, 438, 444, 548 |
| MboI | GATC | 6 cut(s) | 191, 301, 405, 436, 442, 546 |
| MboII | GAAGA | 8 cut(s) | 18, 51, 77, 80, 466, 570, 719, 722 |
| MfeI | CAATTG | 2 cut(s) | 374, 390 |
| MflI | RGATCY | 1 cut(s) | 546 |
| MluCI | AATT | 5 cut(s) | 374, 390, 713, 732, 743 |
| MlyI | GAGTC | 2 cut(s) | 275, 325 |
| MnlI | CCTC | 6 cut(s) | 64, 67, 252, 388, 586, 682 |
| Mph1103I | ATGCAT | 1 cut(s) | 369 |
| MseI | TTAA | 1 cut(s) | 456 |
| MspA1I | CMGCKG | 2 cut(s) | 112, 200 |
| MspI | CCGG | 1 cut(s) | 770 |
| MspR9I | CCNGG | 1 cut(s) | 771 |
| MunI | CAATTG | 2 cut(s) | 374, 390 |
| MvnI | CGCG | 3 cut(s) | 81, 124, 220 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 112, 121, 409 |
| NciI | CCSGG | 1 cut(s) | 771 |
| NcoI | CCATGG | 1 cut(s) | 251 |
| NdeII | GATC | 6 cut(s) | 191, 301, 405, 436, 442, 546 |
| NlaIII | CATG | 6 cut(s) | 255, 262, 412, 463, 508, 666 |
| NlaIV | GGNNCC | 2 cut(s) | 496, 585 |
| NmuCI | GTSAC | 2 cut(s) | 278, 421 |
| NsiI | ATGCAT | 1 cut(s) | 369 |
| NspI | RCATGY | 1 cut(s) | 463 |
| PciI | ACATGT | 1 cut(s) | 459 |
| PfeI | GAWTC | 2 cut(s) | 130, 518 |
| PflFI | GACNNNGTC | 1 cut(s) | 419 |
| PkrI | GCNGC | 2 cut(s) | 114, 199 |
| PleI | GAGTC | 2 cut(s) | 275, 324 |
| PpsI | GAGTC | 2 cut(s) | 275, 324 |
| PscI | ACATGT | 1 cut(s) | 459 |
| PspN4I | GGNNCC | 2 cut(s) | 496, 585 |
| PspPI | GGNCC | 2 cut(s) | 328, 666 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 455, 487 |
| PstNI | CAGNNNCTG | 1 cut(s) | 200 |
| PsuI | RGATCY | 1 cut(s) | 546 |
| PsyI | GACNNNGTC | 1 cut(s) | 419 |
| PvuII | CAGCTG | 1 cut(s) | 200 |
| RsaI | GTAC | 2 cut(s) | 464, 585 |
| RsaNI | GTAC | 2 cut(s) | 463, 584 |
| SaqAI | TTAA | 1 cut(s) | 456 |
| SatI | GCNGC | 2 cut(s) | 113, 198 |
| Sau3AI | GATC | 6 cut(s) | 191, 301, 405, 436, 442, 546 |
| Sau96I | GGNCC | 2 cut(s) | 328, 666 |
| SchI | GAGTC | 2 cut(s) | 275, 325 |
| ScrFI | CCNGG | 1 cut(s) | 771 |
| SfaNI | GCATC | 1 cut(s) | 667 |
| SfcI | CTRYAG | 1 cut(s) | 643 |
| SinI | GGWCC | 2 cut(s) | 328, 666 |
| Sse9I | AATT | 5 cut(s) | 374, 390, 713, 732, 743 |
| SsiI | CCGC | 3 cut(s) | 37, 110, 596 |
| SspMI | CTAG | 1 cut(s) | 612 |
| StyD4I | CCNGG | 1 cut(s) | 769 |
| StyI | CCWWGG | 1 cut(s) | 251 |
| TaaI | ACNGT | 4 cut(s) | 51, 433, 602, 670 |
| TaiI | ACGT | 1 cut(s) | 634 |
| TaqI | TCGA | 2 cut(s) | 414, 720 |
| TasI | AATT | 5 cut(s) | 374, 390, 713, 732, 743 |
| TatI | WGTACW | 1 cut(s) | 462 |
| TfiI | GAWTC | 2 cut(s) | 130, 518 |
| Tru1I | TTAA | 1 cut(s) | 456 |
| Tru9I | TTAA | 1 cut(s) | 456 |
| TscAI | CASTG | 2 cut(s) | 56, 605 |
| TseFI | GTSAC | 2 cut(s) | 278, 421 |
| TseI | GCWGC | 2 cut(s) | 112, 197 |
| Tsp45I | GTSAC | 2 cut(s) | 278, 421 |
| TspDTI | ATGAA | 1 cut(s) | 45 |
| TspGWI | ACGGA | 2 cut(s) | 539, 752 |
| TspRI | CASTG | 2 cut(s) | 56, 605 |
| Tth111I | GACNNNGTC | 1 cut(s) | 419 |
| VpaK11BI | GGWCC | 2 cut(s) | 328, 666 |
| XapI | RAATTY | 1 cut(s) | 713 |
| XceI | RCATGY | 1 cut(s) | 463 |
| XmiI | GTMKAC | 1 cut(s) | 646 |
| XspI | CTAG | 1 cut(s) | 612 |
| Zsp2I | ATGCAT | 1 cut(s) | 369 |