RLG00000020466

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
65359029 .. 65359829
801 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020466

Sequence Viewer

Length: 801 bp
ATGTGGAAAAAAGCAAAACTTTATTCTTCTGCTTGGCGGAAAAGACAACAGTGTTCATCTTCCGAAGAAGAGGAGGTGCGCGTGAGCAGTAAATGGTCTGAACAGCTCCCGCTGCATATTACGCGAGTGATTCTACAAAAGTTATGCCTATCTGATTACATTAGGTGTGGTGCAGTATGCCCTTCTTGGCGATCAGCAGCTGTTGATATGGCAATGGCGCGAATACCTTTTCGTCTCGCTCCTCAACTTCCATGGCTCATGCTCACTACTACTGATTGTGACTCATCAACATCTGCCATAGATCATCACTTTTTGAGTCTTAGTAAGGACCATAAACTCTACAAAACAAACGCCACTTATGGTATGCATAGGCAATTGTGCGTTGGGTCAATTGAGGGGTGGCTGATCATGCTCGACAATGTCACCTTTACTGTTGATCAAGATCATACTACCTTTAACATGTACAACTTGTTCTTCTTGAACCCAATATCAGGTGCCAAAGTCATGTTACCACCAGAATCCACCATTCCACCCAAACTCAGCAAGATCCGTTCCTGCTTGCATAAAGTAGTAGCCTCTTCGGTACCAACAAGCCCGCACTGTCTTGTGGCTAGTCATCATTCAACTGGACGTTTGGCTTTCTGTAGACCTTCAGATAAATCATGGACCGTGATTGATGCTGATGGGGAGGTTCTTACGGGGCTTGAAGAAGAATTTTTCGATATTGAAATAATTGACAAGAAATTATATGTTTTAGTTATCCGTGAACCGGGCTTTTATTCGTGTTTGACATCCACTTAG

Protein Analysis

267

Amino Acids

30.15

Weight (kDa)

8.02

Isoelectric Point (pI)

57.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 35 - 67 2.5e-06 F-box domain
Beta-prop_KIB1-4 PF03478 104 - 254 9.4e-23 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000142)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 583
AccB1I GGYRCC 2 cut(s) 494, 583
AccI GTMKAC 1 cut(s) 646
AccII CGCG 3 cut(s) 81, 124, 220
AciI CCGC 3 cut(s) 37, 110, 596
AclWI GGATC 1 cut(s) 541
AcsI RAATTY 1 cut(s) 713
AcuI CTGAAG 1 cut(s) 636
AfaI GTAC 2 cut(s) 464, 585
AfiI CCNNNNNNNGG 2 cut(s) 491, 769
AflIII ACRYGT 1 cut(s) 459
AgsI TTSAA 4 cut(s) 481, 624, 707, 728
AluBI AGCT 2 cut(s) 106, 200
AluI AGCT 2 cut(s) 106, 200
Alw26I GTCTC 1 cut(s) 239
AlwI GGATC 1 cut(s) 541
AlwNI CAGNNNCTG 1 cut(s) 200
ApeKI GCWGC 2 cut(s) 112, 197
ApoI RAATTY 1 cut(s) 713
Asp718I GGTACC 1 cut(s) 583
AspLEI GCGC 2 cut(s) 81, 220
AspS9I GGNCC 2 cut(s) 328, 666
AsuC2I CCSGG 1 cut(s) 771
AsuHPI GGTGA 1 cut(s) 415
AvaII GGWCC 2 cut(s) 328, 666
BanI GGYRCC 2 cut(s) 494, 583
BbvI GCAGC 2 cut(s) 99, 209
BccI CCATC 1 cut(s) 677
BclI TGATCA 2 cut(s) 405, 436
BcnI CCSGG 1 cut(s) 771
BcoDI GTCTC 1 cut(s) 239
BfaI CTAG 1 cut(s) 612
BfmI CTRYAG 1 cut(s) 643
BisI GCNGC 2 cut(s) 113, 198
BlsI GCNGC 2 cut(s) 114, 199
Bme1390I CCNGG 1 cut(s) 771
Bme18I GGWCC 2 cut(s) 328, 666
BmgT120I GGNCC 2 cut(s) 328, 666
BmiI GGNNCC 2 cut(s) 496, 585
BmrFI CCNGG 1 cut(s) 771
BmsI GCATC 1 cut(s) 667
BpuMI CCSGG 1 cut(s) 771
BsaBI GATNNNNATC 1 cut(s) 441
BsaJI CCNNGG 1 cut(s) 251
Bsc4I CCNNNNNNNGG 2 cut(s) 491, 769
Bse1I ACTGG 1 cut(s) 631
Bse3DI GCAATG 1 cut(s) 219
Bse8I GATNNNNATC 1 cut(s) 441
BseDI CCNNGG 1 cut(s) 251
BseGI GGATG 1 cut(s) 791
BseJI GATNNNNATC 1 cut(s) 441
BseLI CCNNNNNNNGG 2 cut(s) 491, 769
BseMI GCAATG 1 cut(s) 219
BseMII CTCAG 1 cut(s) 553
BseNI ACTGG 1 cut(s) 631
BseRI GAGGAG 2 cut(s) 86, 231
BseXI GCAGC 2 cut(s) 99, 209
BsgI GTGCAG 1 cut(s) 192
Bsh1236I CGCG 3 cut(s) 81, 124, 220
BshNI GGYRCC 2 cut(s) 494, 583
BsiSI CCGG 1 cut(s) 770
BslI CCNNNNNNNGG 2 cut(s) 491, 769
BsmAI GTCTC 1 cut(s) 239
BsmBI CGTCTC 1 cut(s) 239
Bsp1407I TGTACA 1 cut(s) 462
Bsp143I GATC 6 cut(s) 191, 301, 405, 436, 442, 546
Bsp19I CCATGG 1 cut(s) 251
BspACI CCGC 3 cut(s) 37, 110, 596
BspCNI CTCAG 1 cut(s) 552
BspFNI CGCG 3 cut(s) 81, 124, 220
BspLI GGNNCC 2 cut(s) 496, 585
BspPI GGATC 1 cut(s) 541
BspT107I GGYRCC 2 cut(s) 494, 583
BsrDI GCAATG 1 cut(s) 219
BsrGI TGTACA 1 cut(s) 462
BsrI ACTGG 1 cut(s) 631
BssECI CCNNGG 1 cut(s) 251
BssMI GATC 6 cut(s) 191, 301, 405, 436, 442, 546
BssT1I CCWWGG 1 cut(s) 251
Bst4CI ACNGT 4 cut(s) 51, 433, 602, 670
Bst6I CTCTTC 2 cut(s) 63, 583
BstAUI TGTACA 1 cut(s) 462
BstC8I GCNNGC 2 cut(s) 560, 596
BstDEI CTNAG 3 cut(s) 320, 539, 798
BstDSI CCRYGG 1 cut(s) 251
BstF5I GGATG 1 cut(s) 791
BstFNI CGCG 3 cut(s) 81, 124, 220
BstHHI GCGC 2 cut(s) 81, 220
BstKTI GATC 6 cut(s) 194, 304, 408, 439, 445, 549
BstMAI GTCTC 1 cut(s) 239
BstMBI GATC 6 cut(s) 191, 301, 405, 436, 442, 546
BstMWI GCNNNNNNNGC 3 cut(s) 112, 121, 409
BstNSI RCATGY 1 cut(s) 463
BstSCI CCNGG 1 cut(s) 769
BstSFI CTRYAG 1 cut(s) 643
BstUI CGCG 3 cut(s) 81, 124, 220
BstV1I GCAGC 2 cut(s) 99, 209
BstX2I RGATCY 1 cut(s) 546
BstYI RGATCY 1 cut(s) 546
BtgI CCRYGG 1 cut(s) 251
BtsCI GGATG 1 cut(s) 791
BtsIMutI CAGTG 2 cut(s) 56, 598
Cac8I GCNNGC 2 cut(s) 560, 596
CaiI CAGNNNCTG 1 cut(s) 200
CfoI GCGC 2 cut(s) 81, 220
Cfr13I GGNCC 2 cut(s) 328, 666
Csp6I GTAC 2 cut(s) 463, 584
CviAII CATG 6 cut(s) 252, 259, 409, 460, 505, 663
CviQI GTAC 2 cut(s) 463, 584
DdeI CTNAG 3 cut(s) 320, 539, 798
DpnI GATC 6 cut(s) 193, 303, 407, 438, 444, 548
DpnII GATC 6 cut(s) 191, 301, 405, 436, 442, 546
Eam1104I CTCTTC 2 cut(s) 63, 583
EarI CTCTTC 2 cut(s) 63, 583
EciI GGCGGA 1 cut(s) 52
Eco130I CCWWGG 1 cut(s) 251
Eco47I GGWCC 2 cut(s) 328, 666
Eco57I CTGAAG 1 cut(s) 636
EcoT14I CCWWGG 1 cut(s) 251
EcoT22I ATGCAT 1 cut(s) 369
ErhI CCWWGG 1 cut(s) 251
Esp3I CGTCTC 1 cut(s) 239
FaeI CATG 6 cut(s) 255, 262, 412, 463, 508, 666
FalI AAGNNNNNCTT 1 cut(s) 35
FatI CATG 6 cut(s) 251, 258, 408, 459, 504, 662
FauI CCCGC 2 cut(s) 117, 603
FbaI TGATCA 2 cut(s) 405, 436
FblI GTMKAC 1 cut(s) 646
Fnu4HI GCNGC 2 cut(s) 113, 198
FokI GGATG 1 cut(s) 778
Fsp4HI GCNGC 2 cut(s) 113, 198
FspBI CTAG 1 cut(s) 612
GlaI GCGC 2 cut(s) 80, 219
GluI GCNGC 2 cut(s) 113, 198
HapII CCGG 1 cut(s) 770
HhaI GCGC 2 cut(s) 81, 220
Hin1II CATG 6 cut(s) 255, 262, 412, 463, 508, 666
Hin6I GCGC 2 cut(s) 79, 218
HinP1I GCGC 2 cut(s) 79, 218
HinfI GANTC 4 cut(s) 130, 281, 316, 518
HpaII CCGG 1 cut(s) 770
HphI GGTGA 1 cut(s) 415
Hpy166II GTNNAC 2 cut(s) 647, 767
Hpy188I TCNGA 4 cut(s) 64, 100, 154, 655
Hpy188III TCNNGA 2 cut(s) 440, 478
Hpy8I GTNNAC 2 cut(s) 647, 767
HpyAV CCTTC 2 cut(s) 192, 660
HpyCH4III ACNGT 4 cut(s) 51, 433, 602, 670
HpyCH4IV ACGT 1 cut(s) 631
HpyCH4V TGCA 4 cut(s) 115, 173, 367, 562
HpyF10VI GCNNNNNNNGC 3 cut(s) 112, 121, 409
HpyF3I CTNAG 3 cut(s) 320, 539, 798
HpySE526I ACGT 1 cut(s) 631
Hsp92II CATG 6 cut(s) 255, 262, 412, 463, 508, 666
HspAI GCGC 2 cut(s) 79, 218
KpnI GGTACC 1 cut(s) 587
Ksp22I TGATCA 2 cut(s) 405, 436
Kzo9I GATC 6 cut(s) 191, 301, 405, 436, 442, 546
LmnI GCTCC 2 cut(s) 111, 244
LpnPI CCDG 5 cut(s) 477, 528, 568, 612, 783
Lsp1109I GCAGC 2 cut(s) 99, 209
LweI GCATC 1 cut(s) 667
MaeI CTAG 1 cut(s) 612
MaeII ACGT 1 cut(s) 631
MaeIII GTNAC 3 cut(s) 278, 421, 507
MalI GATC 6 cut(s) 193, 303, 407, 438, 444, 548
MboI GATC 6 cut(s) 191, 301, 405, 436, 442, 546
MboII GAAGA 8 cut(s) 18, 51, 77, 80, 466, 570, 719, 722
MfeI CAATTG 2 cut(s) 374, 390
MflI RGATCY 1 cut(s) 546
MluCI AATT 5 cut(s) 374, 390, 713, 732, 743
MlyI GAGTC 2 cut(s) 275, 325
MnlI CCTC 6 cut(s) 64, 67, 252, 388, 586, 682
Mph1103I ATGCAT 1 cut(s) 369
MseI TTAA 1 cut(s) 456
MspA1I CMGCKG 2 cut(s) 112, 200
MspI CCGG 1 cut(s) 770
MspR9I CCNGG 1 cut(s) 771
MunI CAATTG 2 cut(s) 374, 390
MvnI CGCG 3 cut(s) 81, 124, 220
MwoI GCNNNNNNNGC 3 cut(s) 112, 121, 409
NciI CCSGG 1 cut(s) 771
NcoI CCATGG 1 cut(s) 251
NdeII GATC 6 cut(s) 191, 301, 405, 436, 442, 546
NlaIII CATG 6 cut(s) 255, 262, 412, 463, 508, 666
NlaIV GGNNCC 2 cut(s) 496, 585
NmuCI GTSAC 2 cut(s) 278, 421
NsiI ATGCAT 1 cut(s) 369
NspI RCATGY 1 cut(s) 463
PciI ACATGT 1 cut(s) 459
PfeI GAWTC 2 cut(s) 130, 518
PflFI GACNNNGTC 1 cut(s) 419
PkrI GCNGC 2 cut(s) 114, 199
PleI GAGTC 2 cut(s) 275, 324
PpsI GAGTC 2 cut(s) 275, 324
PscI ACATGT 1 cut(s) 459
PspN4I GGNNCC 2 cut(s) 496, 585
PspPI GGNCC 2 cut(s) 328, 666
PsrI GAACNNNNNNTAC 2 cut(s) 455, 487
PstNI CAGNNNCTG 1 cut(s) 200
PsuI RGATCY 1 cut(s) 546
PsyI GACNNNGTC 1 cut(s) 419
PvuII CAGCTG 1 cut(s) 200
RsaI GTAC 2 cut(s) 464, 585
RsaNI GTAC 2 cut(s) 463, 584
SaqAI TTAA 1 cut(s) 456
SatI GCNGC 2 cut(s) 113, 198
Sau3AI GATC 6 cut(s) 191, 301, 405, 436, 442, 546
Sau96I GGNCC 2 cut(s) 328, 666
SchI GAGTC 2 cut(s) 275, 325
ScrFI CCNGG 1 cut(s) 771
SfaNI GCATC 1 cut(s) 667
SfcI CTRYAG 1 cut(s) 643
SinI GGWCC 2 cut(s) 328, 666
Sse9I AATT 5 cut(s) 374, 390, 713, 732, 743
SsiI CCGC 3 cut(s) 37, 110, 596
SspMI CTAG 1 cut(s) 612
StyD4I CCNGG 1 cut(s) 769
StyI CCWWGG 1 cut(s) 251
TaaI ACNGT 4 cut(s) 51, 433, 602, 670
TaiI ACGT 1 cut(s) 634
TaqI TCGA 2 cut(s) 414, 720
TasI AATT 5 cut(s) 374, 390, 713, 732, 743
TatI WGTACW 1 cut(s) 462
TfiI GAWTC 2 cut(s) 130, 518
Tru1I TTAA 1 cut(s) 456
Tru9I TTAA 1 cut(s) 456
TscAI CASTG 2 cut(s) 56, 605
TseFI GTSAC 2 cut(s) 278, 421
TseI GCWGC 2 cut(s) 112, 197
Tsp45I GTSAC 2 cut(s) 278, 421
TspDTI ATGAA 1 cut(s) 45
TspGWI ACGGA 2 cut(s) 539, 752
TspRI CASTG 2 cut(s) 56, 605
Tth111I GACNNNGTC 1 cut(s) 419
VpaK11BI GGWCC 2 cut(s) 328, 666
XapI RAATTY 1 cut(s) 713
XceI RCATGY 1 cut(s) 463
XmiI GTMKAC 1 cut(s) 646
XspI CTAG 1 cut(s) 612
Zsp2I ATGCAT 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.