Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000142

Physical Location & Seq

Genomic Coordinates Reverse (-)

3199873 .. 3201828

Gene Structure 1956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0043800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGAGAGCGGAGAGATTCAGAGGGTTGGAGTCCTTCAACGCCTTCCACTGCTTGTGATCAACTTCGTTGCTGGGACTCTGGTTCTGCTTTTTGCCCTTGCGGGATTTTTCGCAGGAGGCATTTTTGGTGCTTTAGCCGGTAAGGCTTCTGACAGTGGTATTGTTCGTGGAGCTGGATTGGGTGCTGTTGCTGGGGCTGTTCTCTCTGTGGAGATTTTGGAAGCTTCACGTGAGTTATTGCGTCTTGGTCGGCCTGGCTCACGAAGATCTTCATTGATGGCAGAAATTACAGAGGAGCTTATTTGTTGGAGGTTTGAGGAGGAAAACTTACCACCGCCAGAAGTGCTAAGTGCTGGCCATTGGCAGGTTAACTTCGCTAATCTTAACCTTGATGAGATTCGTGATGGAGTAGTTGAAACCAGAGGGTTGTCAAGGGATTTGTTCAAGAAATTGCCATATCATGAGATTCTGGGGGATACCAAGGCAGCTCGGGTTTCCTGTTGTACAATATGTTTGCAGGATCTTGAAGTGGGAGAAACTGTAAGGACCCTGCCTCTCTGTCAGCATACATTTCACTTGGCTTGTGTGGACAAGTGGCTTGTTAGACATGGTTCATGCCCCTTATGCAGACAAGATGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010468 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030684 GO:0030686 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070545 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904 GO:2000232

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT_2 Pescadillo_N

Protein Analysis

213

Amino Acids

23.18

Weight (kDa)

5.76

Isoelectric Point (pI)

46.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	166 - 210	1.4e-07	RING-H2 zinc finger domain
zf-RING_2	PF13639	167 - 210	1.6e-13	Ring finger domain
zf-RING_11	PF17123	168 - 196	2e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	168 - 209	1.4e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	168 - 207	9.4e-06	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000142)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13532 FvH4_2g28870 FvH4_3g30930 FvH4_3g37281 FvH4_3g37300 FvH4_3g37301 FvH4_3g37301 FvH4_4g23711 FvH4_5g02330 FvH4_6g16960 FvH4_6g16971 FvH4_6g21291 FvH4_6g21331 FvH4_6g22212 FvH4_6g22332 FvH4_6g36920 FvH4_6g37552 FvH4_6g37591 FvH4_6g39721 FvH4_6g46020 FvH4_6g47001 FvH4_6g47002 FvH4_6g47130 FvH4_6g47140 FvH4_6g47161 FvH4_6g47170 FvH4_6g47190 FvH4_6g49120 FvH4_6g49280 FvH4_6g49281 FvH4_6g49640 FvH4_6g49640
malus_domestica	MD03G1085600.v1.1 MD09G1027500.v1.1 MD09G1050100.v1.1
prunus_persica	Prupe.1G004300_v2.0.a1 Prupe.1G016300_v2.0.a1 Prupe.1G019300_v2.0.a1 Prupe.3G239100_v2.0.a1 Prupe.3G291200_v2.0.a1
pyrus_communis	pycom08g02840 pycom08g02860 pycom08g02870
rosa_chinensis	RchiOBHm_Chr2g0153831 RchiOBHm_Chr2g0166171 RchiOBHm_Chr2g0166201 RchiOBHm_Chr3g0476221 RchiOBHm_Chr4g0430971 RchiOBHm_Chr5g0067081 RchiOBHm_Chr7g0197821
rosa_laevigata	RLG00000001284 RLG00000006996 RLG00000012710 RLG00000019299 RLG00000020285 RLG00000020444 RLG00000020466 RLG00000020591 RLG00000020665 RLG00000020730 RLG00000020732 RLG00000021449 RLG00000021592 RLG00000021593 RLG00000021594 RLG00000021596 RLG00000021597 RLG00000021801 RLG00000023534 RLG00000023538 RLG00000023693 RLG00000023694 RLG00000023699 RLG00000024196 RLG00000024214 RLG00000024220 RLG00000024244 RLG00000024608 RLG00000024612 RLG00000035157 RLG00000035906
rosa_multiflora	Rmu_co8282815.1_g000001 Rmu_co8380495.1_g000001 Rmu_co8381111.1_g000001 Rmu_co8460513.1_g000001 Rmu_co8481947.1_g000001 Rmu_co8487937.1_g000001 Rmu_sc0000151.1_g000017 Rmu_sc0001427.1_g000003 Rmu_sc0001427.1_g000006 Rmu_sc0002611.1_g000008 Rmu_sc0003887.1_g000018 Rmu_sc0003887.1_g000019 Rmu_sc0003887.1_g000021 Rmu_sc0004119.1_g000004 Rmu_sc0004329.1_g000003 Rmu_sc0004485.1_g000024 Rmu_sc0005290.1_g000001 Rmu_sc0005609.1_g000006 Rmu_sc0006187.1_g000018 Rmu_sc0006218.1_g000032 Rmu_sc0006218.1_g000033 Rmu_sc0007150.1_g000003 Rmu_sc0007154.1_g000004 Rmu_sc0007154.1_g000005 Rmu_sc0007154.1_g000007 Rmu_sc0008314.1_g000012 Rmu_sc0010073.1_g000023 Rmu_sc0010073.1_g000025 Rmu_sc0011216.1_g000008 Rmu_sc0012445.1_g000005 Rmu_sc0013571.1_g000002 Rmu_sc0018648.1_g000002 Rmu_sc0020961.1_g000002 Rmu_sc0020961.1_g000003 Rmu_sc0023710.1_g000001 Rmu_sc0031310.1_g000008 Rmu_sc0033940.1_g000001 Rmu_sc0035493.1_g000001 Rmu_sc0039285.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014000 Rroxscaffold_1G00014020 Rroxscaffold_2G00082760 Rroxscaffold_2G00085090 Rroxscaffold_2G00085100 Rroxscaffold_2G00085140 Rroxscaffold_2G00086670 Rroxscaffold_2G00086680 Rroxscaffold_2G00098190 Rroxscaffold_2G00099270 Rroxscaffold_3G00227460 Rroxscaffold_3G00258190 Rroxscaffold_3G00259780 Rroxscaffold_6G00402940 Rroxscaffold_6G00410200 Rroxscaffold_6G00410210 Rroxscaffold_7G00184320
rosa_rugosa	Rorug02G0416100 Rorug02G0416200 Rorug02G0520900 Rorug02G0521200 Rorug02G0521300 Rorug02G0534600 Rorug03G0116300 Rorug03G0162900 Rorug03G0162900 Rorug04G0241400 Rorug05G0380900 Rorug07G0043800
rosa_samantha	Rh1AG115300 Rh2BG483700 Rh2BG509900 Rh2BG515700 Rh2BG515800 Rh2BG586500 Rh2BG586600 Rh2BG586700 Rh2BG598800 Rh2BG598900 Rh2BG599100 Rh2BG618400 Rh2BG630500 Rh2CG457400 Rh2CG484900 Rh3AG165300 Rh3AG212900 Rh3AG213300 Rh3BG145800 Rh3BG146100 Rh3BG235300 Rh3BG246500 Rh3BG247000 Rh3BG247100 Rh3CG240300 Rh3CG240800 Rh3CG240900 Rh3CG259600 Rh3DG147000 Rh3DG184800 Rh3DG184900 Rh3DG185000 Rh3DG239500 Rh3DG240100 Rh3DG240200 Rh3DG255800 Rh5BG458500 Rh5CG480400 Rh7BG170400 Rh7BG407900 Rh7CG176900
rosa_wichuraiana	Rw2G038990 Rw2G041550 Rw2G047660 Rw2G048940 Rw4G026370 Rw6G008730 Rw7G014600

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	355
AccBSI	CCGCTC	1 cut(s)	9
AciI	CCGC	3 cut(s)	9, 101, 335
AclWI	GGATC	1 cut(s)	528
AcoI	YGGCCR	1 cut(s)	355
AcvI	CACGTG	1 cut(s)	230
AfaI	GTAC	1 cut(s)	505
AfiI	CCNNNNNNNGG	1 cut(s)	364
AgsI	TTSAA	4 cut(s)	38, 416, 445, 527
AjnI	CCWGG	1 cut(s)	253
AluBI	AGCT	4 cut(s)	173, 224, 298, 488
AluI	AGCT	4 cut(s)	173, 224, 298, 488
AlwI	GGATC	1 cut(s)	528
Ama87I	CYCGRG	1 cut(s)	489
AoxI	GGCC	2 cut(s)	251, 355
ApeKI	GCWGC	1 cut(s)	485
Asp700I	GAANNNNTTC	1 cut(s)	268
AspS9I	GGNCC	1 cut(s)	546
AvaI	CYCGRG	1 cut(s)	489
AvaII	GGWCC	1 cut(s)	546
BalI	TGGCCA	1 cut(s)	357
BbrPI	CACGTG	1 cut(s)	230
BbvI	GCAGC	1 cut(s)	497
BccI	CCATC	2 cut(s)	271, 398
BciT130I	CCWGG	1 cut(s)	255
BciVI	GTATCC	1 cut(s)	469
BclI	TGATCA	1 cut(s)	57
BfuAI	ACCTGC	1 cut(s)	355
BfuI	GTATCC	1 cut(s)	469
BglI	GCCNNNNNGGC	1 cut(s)	143
BglII	AGATCT	1 cut(s)	266
BisI	GCNGC	1 cut(s)	486
BlsI	GCNGC	1 cut(s)	487
Bme1390I	CCNGG	1 cut(s)	255
Bme18I	GGWCC	1 cut(s)	546
BmeT110I	CYCGRG	1 cut(s)	489
BmgT120I	GGNCC	1 cut(s)	546
BmiI	GGNNCC	1 cut(s)	548
BmrFI	CCNGG	1 cut(s)	255
BsaAI	YACGTR	1 cut(s)	230
BsaJI	CCNNGG	1 cut(s)	480
BsaXI	ACNNNNNCTCC	2 cut(s)	525, 555
Bsc4I	CCNNNNNNNGG	1 cut(s)	364
Bse118I	RCCGGY	1 cut(s)	137
BseBI	CCWGG	1 cut(s)	255
BseDI	CCNNGG	1 cut(s)	480
BseLI	CCNNNNNNNGG	1 cut(s)	364
BseRI	GAGGAG	2 cut(s)	308, 332
BseXI	GCAGC	1 cut(s)	497
BseYI	CCCAGC	2 cut(s)	71, 191
BshFI	GGCC	2 cut(s)	253, 357
BsiHKCI	CYCGRG	1 cut(s)	489
BsiSI	CCGG	1 cut(s)	138
BslFI	GGGAC	1 cut(s)	88
BslI	CCNNNNNNNGG	1 cut(s)	364
BsmFI	GGGAC	1 cut(s)	88
BsnI	GGCC	2 cut(s)	253, 357
BsoBI	CYCGRG	1 cut(s)	489
Bsp1407I	TGTACA	1 cut(s)	503
Bsp143I	GATC	3 cut(s)	57, 266, 520
BspACI	CCGC	3 cut(s)	9, 101, 335
BspANI	GGCC	2 cut(s)	253, 357
BspHI	TCATGA	1 cut(s)	460
BspLI	GGNNCC	1 cut(s)	548
BspMI	ACCTGC	1 cut(s)	355
BspPI	GGATC	1 cut(s)	528
BsrBI	CCGCTC	1 cut(s)	9
BsrFI	RCCGGY	1 cut(s)	137
BsrGI	TGTACA	1 cut(s)	503
BssAI	RCCGGY	1 cut(s)	137
BssECI	CCNNGG	1 cut(s)	480
BssMI	GATC	3 cut(s)	57, 266, 520
BssT1I	CCWWGG	1 cut(s)	480
Bst2UI	CCWGG	1 cut(s)	255
Bst4CI	ACNGT	2 cut(s)	155, 541
BstAUI	TGTACA	1 cut(s)	503
BstBAI	YACGTR	1 cut(s)	230
BstC8I	GCNNGC	1 cut(s)	355
BstDEI	CTNAG	1 cut(s)	347
BstKTI	GATC	3 cut(s)	60, 269, 523
BstMBI	GATC	3 cut(s)	57, 266, 520
BstMWI	GCNNNNNNNGC	3 cut(s)	143, 343, 624
BstNI	CCWGG	1 cut(s)	255
BstSCI	CCNGG	1 cut(s)	253
BstV1I	GCAGC	1 cut(s)	497
BstX2I	RGATCY	2 cut(s)	266, 520
BstYI	RGATCY	2 cut(s)	266, 520
BsuI	GTATCC	1 cut(s)	469
BsuRI	GGCC	2 cut(s)	253, 357
BtsI	GCAGTG	1 cut(s)	47
BtsIMutI	CAGTG	2 cut(s)	47, 160
BveI	ACCTGC	1 cut(s)	355
Cac8I	GCNNGC	1 cut(s)	355
CciI	TCATGA	1 cut(s)	460
Cfr10I	RCCGGY	1 cut(s)	137
Cfr13I	GGNCC	1 cut(s)	546
CseI	GACGC	1 cut(s)	230
Csp6I	GTAC	1 cut(s)	504
CviAII	CATG	3 cut(s)	461, 608, 615
CviQI	GTAC	1 cut(s)	504
DdeI	CTNAG	1 cut(s)	347
DpnI	GATC	3 cut(s)	59, 268, 522
DpnII	GATC	3 cut(s)	57, 266, 520
EaeI	YGGCCR	1 cut(s)	355
Eco130I	CCWWGG	1 cut(s)	480
Eco47I	GGWCC	1 cut(s)	546
Eco72I	CACGTG	1 cut(s)	230
Eco88I	CYCGRG	1 cut(s)	489
EcoO109I	RGGNCCY	1 cut(s)	546
EcoRII	CCWGG	1 cut(s)	253
EcoT14I	CCWWGG	1 cut(s)	480
ErhI	CCWWGG	1 cut(s)	480
FaeI	CATG	3 cut(s)	464, 611, 618
FaiI	YATR	7 cut(s)	457, 462, 511, 567, 609, 616, 625
FaqI	GGGAC	1 cut(s)	88
FatI	CATG	3 cut(s)	460, 607, 614
FauI	CCCGC	1 cut(s)	94
FbaI	TGATCA	1 cut(s)	57
Fnu4HI	GCNGC	1 cut(s)	486
Fsp4HI	GCNGC	1 cut(s)	486
GluI	GCNGC	1 cut(s)	486
GsaI	CCCAGC	2 cut(s)	75, 195
HaeIII	GGCC	2 cut(s)	253, 357
HapII	CCGG	1 cut(s)	138
HgaI	GACGC	1 cut(s)	230
Hin1II	CATG	3 cut(s)	464, 611, 618
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HindIII	AAGCTT	1 cut(s)	222
HinfI	GANTC	5 cut(s)	16, 30, 76, 397, 466
HpaI	GTTAAC	1 cut(s)	370
HpaII	CCGG	1 cut(s)	138
Hpy166II	GTNNAC	2 cut(s)	370, 589
Hpy188I	TCNGA	2 cut(s)	21, 151
Hpy188III	TCNNGA	5 cut(s)	261, 401, 445, 461, 524
Hpy8I	GTNNAC	2 cut(s)	370, 589
HpyAV	CCTTC	2 cut(s)	44, 53
HpyCH4III	ACNGT	2 cut(s)	155, 541
HpyCH4IV	ACGT	1 cut(s)	229
HpyCH4V	TGCA	2 cut(s)	517, 627
HpyF10VI	GCNNNNNNNGC	3 cut(s)	143, 343, 624
HpyF3I	CTNAG	1 cut(s)	347
HpySE526I	ACGT	1 cut(s)	229
Hsp92II	CATG	3 cut(s)	464, 611, 618
Ksp22I	TGATCA	1 cut(s)	57
KspAI	GTTAAC	1 cut(s)	370
Kzo9I	GATC	3 cut(s)	57, 266, 520
LmnI	GCTCC	2 cut(s)	170, 295
Lsp1109I	GCAGC	1 cut(s)	497
MaeII	ACGT	1 cut(s)	229
MalI	GATC	3 cut(s)	59, 268, 522
MbiI	CCGCTC	1 cut(s)	9
MboI	GATC	3 cut(s)	57, 266, 520
MboII	GAAGA	2 cut(s)	261, 276
MflI	RGATCY	2 cut(s)	266, 520
MlsI	TGGCCA	1 cut(s)	357
MluCI	AATT	2 cut(s)	285, 449
MluNI	TGGCCA	1 cut(s)	357
MlyI	GAGTC	2 cut(s)	39, 70
MmeI	TCCRAC	2 cut(s)	7, 287
MnlI	CCTC	8 cut(s)	15, 110, 286, 303, 310, 313, 416, 564
Mox20I	TGGCCA	1 cut(s)	357
MroXI	GAANNNNTTC	1 cut(s)	268
MscI	TGGCCA	1 cut(s)	357
MseI	TTAA	2 cut(s)	369, 384
Msp20I	TGGCCA	1 cut(s)	357
MspI	CCGG	1 cut(s)	138
MspR9I	CCNGG	1 cut(s)	255
MvaI	CCWGG	1 cut(s)	255
MwoI	GCNNNNNNNGC	3 cut(s)	143, 343, 624
NdeII	GATC	3 cut(s)	57, 266, 520
NlaIII	CATG	3 cut(s)	464, 611, 618
NlaIV	GGNNCC	1 cut(s)	548
PagI	TCATGA	1 cut(s)	460
PdmI	GAANNNNTTC	1 cut(s)	268
PfeI	GAWTC	3 cut(s)	16, 397, 466
PkrI	GCNGC	1 cut(s)	487
PleI	GAGTC	2 cut(s)	38, 70
PmaCI	CACGTG	1 cut(s)	230
PmlI	CACGTG	1 cut(s)	230
PpsI	GAGTC	2 cut(s)	38, 70
Ppu21I	YACGTR	1 cut(s)	230
PpuMI	RGGWCCY	1 cut(s)	546
Psp5II	RGGWCCY	1 cut(s)	546
Psp6I	CCWGG	1 cut(s)	253
PspCI	CACGTG	1 cut(s)	230
PspFI	CCCAGC	2 cut(s)	71, 191
PspGI	CCWGG	1 cut(s)	253
PspN4I	GGNNCC	1 cut(s)	548
PspPI	GGNCC	1 cut(s)	546
PspPPI	RGGWCCY	1 cut(s)	546
PsuI	RGATCY	2 cut(s)	266, 520
RsaI	GTAC	1 cut(s)	505
RsaNI	GTAC	1 cut(s)	504
SaqAI	TTAA	2 cut(s)	369, 384
SatI	GCNGC	1 cut(s)	486
Sau3AI	GATC	3 cut(s)	57, 266, 520
Sau96I	GGNCC	1 cut(s)	546
SchI	GAGTC	2 cut(s)	39, 70
ScrFI	CCNGG	1 cut(s)	255
SetI	ASST	8 cut(s)	175, 226, 232, 300, 314, 369, 390, 490
SinI	GGWCC	1 cut(s)	546
Sse9I	AATT	2 cut(s)	285, 449
SsiI	CCGC	3 cut(s)	9, 101, 335
StyD4I	CCNGG	1 cut(s)	253
StyI	CCWWGG	1 cut(s)	480
TaaI	ACNGT	2 cut(s)	155, 541
TaiI	ACGT	1 cut(s)	232
TasI	AATT	2 cut(s)	285, 449
TatI	WGTACW	1 cut(s)	503
TfiI	GAWTC	3 cut(s)	16, 397, 466
Tru1I	TTAA	2 cut(s)	369, 384
Tru9I	TTAA	2 cut(s)	369, 384
TscAI	CASTG	2 cut(s)	54, 160
TseI	GCWGC	1 cut(s)	485
TspDTI	ATGAA	2 cut(s)	261, 603
TspRI	CASTG	2 cut(s)	54, 160
VpaK11BI	GGWCC	1 cut(s)	546
XmnI	GAANNNNTTC	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.