Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 412 |
| AciI | CCGC | 3 cut(s) | 187, 382, 527 |
| AclWI | GGATC | 1 cut(s) | 343 |
| AcoI | YGGCCR | 1 cut(s) | 64 |
| AcsI | RAATTY | 1 cut(s) | 303 |
| AdeI | CACNNNGTG | 2 cut(s) | 329, 524 |
| AfaI | GTAC | 1 cut(s) | 368 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 404 |
| AgsI | TTSAA | 1 cut(s) | 394 |
| AjnI | CCWGG | 1 cut(s) | 182 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 245, 277 |
| AluBI | AGCT | 1 cut(s) | 207 |
| AluI | AGCT | 1 cut(s) | 207 |
| Alw21I | GWGCWC | 1 cut(s) | 489 |
| AlwI | GGATC | 1 cut(s) | 343 |
| AoxI | GGCC | 1 cut(s) | 64 |
| ApeKI | GCWGC | 1 cut(s) | 530 |
| ApoI | RAATTY | 1 cut(s) | 303 |
| AspLEI | GCGC | 1 cut(s) | 412 |
| AsuHPI | GGTGA | 2 cut(s) | 37, 215 |
| BalI | TGGCCA | 1 cut(s) | 66 |
| BauI | CACGAG | 1 cut(s) | 362 |
| BbsI | GAAGAC | 1 cut(s) | 506 |
| Bbv12I | GWGCWC | 1 cut(s) | 489 |
| BccI | CCATC | 1 cut(s) | 16 |
| BceAI | ACGGC | 1 cut(s) | 62 |
| BciT130I | CCWGG | 1 cut(s) | 184 |
| BclI | TGATCA | 1 cut(s) | 354 |
| BisI | GCNGC | 3 cut(s) | 382, 528, 531 |
| BlsI | GCNGC | 3 cut(s) | 383, 529, 532 |
| Bme1390I | CCNGG | 1 cut(s) | 184 |
| BmrFI | CCNGG | 1 cut(s) | 184 |
| BpiI | GAAGAC | 1 cut(s) | 506 |
| BsaJI | CCNNGG | 2 cut(s) | 233, 323 |
| BsaWI | WCCGGW | 1 cut(s) | 297 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 404 |
| Bse1I | ACTGG | 1 cut(s) | 160 |
| BseBI | CCWGG | 1 cut(s) | 184 |
| BseDI | CCNNGG | 2 cut(s) | 233, 323 |
| BseGI | GGATG | 1 cut(s) | 156 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 404 |
| BseNI | ACTGG | 1 cut(s) | 160 |
| Bsh1236I | CGCG | 1 cut(s) | 412 |
| BshFI | GGCC | 1 cut(s) | 66 |
| BsiHKAI | GWGCWC | 1 cut(s) | 489 |
| BsiSI | CCGG | 1 cut(s) | 298 |
| BslFI | GGGAC | 1 cut(s) | 203 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 404 |
| BsmFI | GGGAC | 1 cut(s) | 203 |
| BsnI | GGCC | 1 cut(s) | 66 |
| Bsp1286I | GDGCHC | 1 cut(s) | 489 |
| Bsp143I | GATC | 3 cut(s) | 76, 335, 354 |
| Bsp19I | CCATGG | 1 cut(s) | 233 |
| BspACI | CCGC | 3 cut(s) | 187, 382, 527 |
| BspANI | GGCC | 1 cut(s) | 66 |
| BspFNI | CGCG | 1 cut(s) | 412 |
| BspHI | TCATGA | 1 cut(s) | 79 |
| BspPI | GGATC | 1 cut(s) | 343 |
| BsrI | ACTGG | 1 cut(s) | 160 |
| BssECI | CCNNGG | 2 cut(s) | 233, 323 |
| BssMI | GATC | 3 cut(s) | 76, 335, 354 |
| BssSI | CACGAG | 1 cut(s) | 362 |
| BssT1I | CCWWGG | 1 cut(s) | 233 |
| Bst2BI | CACGAG | 1 cut(s) | 362 |
| Bst2UI | CCWGG | 1 cut(s) | 184 |
| Bst4CI | ACNGT | 3 cut(s) | 278, 327, 491 |
| Bst6I | CTCTTC | 2 cut(s) | 266, 469 |
| BstDSI | CCRYGG | 2 cut(s) | 233, 323 |
| BstF5I | GGATG | 1 cut(s) | 156 |
| BstFNI | CGCG | 1 cut(s) | 412 |
| BstHHI | GCGC | 1 cut(s) | 412 |
| BstKTI | GATC | 3 cut(s) | 79, 338, 357 |
| BstMBI | GATC | 3 cut(s) | 76, 335, 354 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 144, 536 |
| BstNI | CCWGG | 1 cut(s) | 184 |
| BstSCI | CCNGG | 1 cut(s) | 182 |
| BstUI | CGCG | 1 cut(s) | 412 |
| BstV2I | GAAGAC | 1 cut(s) | 506 |
| BsuRI | GGCC | 1 cut(s) | 66 |
| BtgI | CCRYGG | 2 cut(s) | 233, 323 |
| BtsCI | GGATG | 1 cut(s) | 156 |
| BtsI | GCAGTG | 1 cut(s) | 51 |
| BtsIMutI | CAGTG | 3 cut(s) | 51, 167, 487 |
| CciI | TCATGA | 1 cut(s) | 79 |
| CfoI | GCGC | 1 cut(s) | 412 |
| Csp6I | GTAC | 1 cut(s) | 367 |
| CviAII | CATG | 5 cut(s) | 80, 118, 234, 358, 540 |
| CviJI | RGCY | 7 cut(s) | 49, 66, 207, 238, 322, 381, 461 |
| CviKI_1 | RGCY | 7 cut(s) | 49, 66, 207, 238, 322, 381, 461 |
| CviQI | GTAC | 1 cut(s) | 367 |
| DpnI | GATC | 3 cut(s) | 78, 337, 356 |
| DpnII | GATC | 3 cut(s) | 76, 335, 354 |
| DraIII | CACNNNGTG | 2 cut(s) | 329, 524 |
| EaeI | YGGCCR | 1 cut(s) | 64 |
| Eam1104I | CTCTTC | 2 cut(s) | 266, 469 |
| EarI | CTCTTC | 2 cut(s) | 266, 469 |
| Eco130I | CCWWGG | 1 cut(s) | 233 |
| Eco32I | GATATC | 1 cut(s) | 30 |
| EcoRII | CCWGG | 1 cut(s) | 182 |
| EcoRV | GATATC | 1 cut(s) | 30 |
| EcoT14I | CCWWGG | 1 cut(s) | 233 |
| EcoT22I | ATGCAT | 1 cut(s) | 440 |
| ErhI | CCWWGG | 1 cut(s) | 233 |
| FaeI | CATG | 5 cut(s) | 83, 121, 237, 361, 543 |
| FaqI | GGGAC | 1 cut(s) | 203 |
| FatI | CATG | 5 cut(s) | 79, 117, 233, 357, 539 |
| FauI | CCCGC | 1 cut(s) | 180 |
| FbaI | TGATCA | 1 cut(s) | 354 |
| Fnu4HI | GCNGC | 3 cut(s) | 382, 528, 531 |
| FokI | GGATG | 1 cut(s) | 143 |
| Fsp4HI | GCNGC | 3 cut(s) | 382, 528, 531 |
| GlaI | GCGC | 1 cut(s) | 411 |
| GluI | GCNGC | 3 cut(s) | 382, 528, 531 |
| HaeIII | GGCC | 1 cut(s) | 66 |
| HapII | CCGG | 1 cut(s) | 298 |
| HhaI | GCGC | 1 cut(s) | 412 |
| Hin1II | CATG | 5 cut(s) | 83, 121, 237, 361, 543 |
| Hin6I | GCGC | 1 cut(s) | 410 |
| HinP1I | GCGC | 1 cut(s) | 410 |
| HinfI | GANTC | 3 cut(s) | 248, 414, 506 |
| HpaII | CCGG | 1 cut(s) | 298 |
| HphI | GGTGA | 2 cut(s) | 37, 215 |
| Hpy188III | TCNNGA | 3 cut(s) | 33, 80, 391 |
| Hpy99I | CGWCG | 1 cut(s) | 77 |
| HpyAV | CCTTC | 2 cut(s) | 236, 435 |
| HpyCH4III | ACNGT | 3 cut(s) | 278, 327, 491 |
| HpyCH4IV | ACGT | 2 cut(s) | 171, 369 |
| HpyCH4V | TGCA | 3 cut(s) | 133, 361, 438 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 144, 536 |
| HpySE526I | ACGT | 2 cut(s) | 171, 369 |
| Hsp92II | CATG | 5 cut(s) | 83, 121, 237, 361, 543 |
| HspAI | GCGC | 1 cut(s) | 410 |
| Ksp22I | TGATCA | 1 cut(s) | 354 |
| Kzo9I | GATC | 3 cut(s) | 76, 335, 354 |
| LmnI | GCTCC | 1 cut(s) | 484 |
| LpnPI | CCDG | 6 cut(s) | 162, 169, 173, 196, 311, 390 |
| MaeII | ACGT | 2 cut(s) | 171, 369 |
| MaeIII | GTNAC | 2 cut(s) | 167, 290 |
| MalI | GATC | 3 cut(s) | 78, 337, 356 |
| MboI | GATC | 3 cut(s) | 76, 335, 354 |
| MboII | GAAGA | 5 cut(s) | 16, 253, 256, 456, 511 |
| MfeI | CAATTG | 1 cut(s) | 339 |
| MhlI | GDGCHC | 1 cut(s) | 489 |
| MlsI | TGGCCA | 1 cut(s) | 66 |
| MluCI | AATT | 3 cut(s) | 195, 303, 339 |
| MluNI | TGGCCA | 1 cut(s) | 66 |
| MlyI | GAGTC | 2 cut(s) | 423, 500 |
| MmeI | TCCRAC | 1 cut(s) | 313 |
| MnlI | CCTC | 5 cut(s) | 153, 228, 337, 472, 474 |
| Mox20I | TGGCCA | 1 cut(s) | 66 |
| Mph1103I | ATGCAT | 1 cut(s) | 440 |
| MscI | TGGCCA | 1 cut(s) | 66 |
| MseI | TTAA | 2 cut(s) | 318, 372 |
| MslI | CAYNNNNRTG | 3 cut(s) | 433, 492, 538 |
| Msp20I | TGGCCA | 1 cut(s) | 66 |
| MspI | CCGG | 1 cut(s) | 298 |
| MspR9I | CCNGG | 1 cut(s) | 184 |
| MunI | CAATTG | 1 cut(s) | 339 |
| MvaI | CCWGG | 1 cut(s) | 184 |
| MvnI | CGCG | 1 cut(s) | 412 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 144, 536 |
| NcoI | CCATGG | 1 cut(s) | 233 |
| NdeII | GATC | 3 cut(s) | 76, 335, 354 |
| NlaIII | CATG | 5 cut(s) | 83, 121, 237, 361, 543 |
| NmuCI | GTSAC | 1 cut(s) | 290 |
| NsiI | ATGCAT | 1 cut(s) | 440 |
| PagI | TCATGA | 1 cut(s) | 79 |
| PfeI | GAWTC | 1 cut(s) | 248 |
| PkrI | GCNGC | 3 cut(s) | 383, 529, 532 |
| PleI | GAGTC | 2 cut(s) | 422, 500 |
| PpsI | GAGTC | 2 cut(s) | 422, 500 |
| Psp6I | CCWGG | 1 cut(s) | 182 |
| PspGI | CCWGG | 1 cut(s) | 182 |
| RsaI | GTAC | 1 cut(s) | 368 |
| RsaNI | GTAC | 1 cut(s) | 367 |
| RseI | CAYNNNNRTG | 3 cut(s) | 433, 492, 538 |
| SaqAI | TTAA | 2 cut(s) | 318, 372 |
| SatI | GCNGC | 3 cut(s) | 382, 528, 531 |
| Sau3AI | GATC | 3 cut(s) | 76, 335, 354 |
| SchI | GAGTC | 2 cut(s) | 423, 500 |
| ScrFI | CCNGG | 1 cut(s) | 184 |
| SduI | GDGCHC | 1 cut(s) | 489 |
| SetI | ASST | 7 cut(s) | 145, 174, 185, 209, 228, 372, 409 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 433, 492, 538 |
| Sse9I | AATT | 3 cut(s) | 195, 303, 339 |
| SsiI | CCGC | 3 cut(s) | 187, 382, 527 |
| StyD4I | CCNGG | 1 cut(s) | 182 |
| StyI | CCWWGG | 1 cut(s) | 233 |
| TaaI | ACNGT | 3 cut(s) | 278, 327, 491 |
| TaiI | ACGT | 2 cut(s) | 174, 372 |
| TaqI | TCGA | 3 cut(s) | 246, 308, 467 |
| TasI | AATT | 3 cut(s) | 195, 303, 339 |
| TauI | GCSGC | 2 cut(s) | 384, 530 |
| TfiI | GAWTC | 1 cut(s) | 248 |
| Tru1I | TTAA | 2 cut(s) | 318, 372 |
| Tru9I | TTAA | 2 cut(s) | 318, 372 |
| TscAI | CASTG | 3 cut(s) | 58, 167, 494 |
| TseFI | GTSAC | 1 cut(s) | 290 |
| TseI | GCWGC | 1 cut(s) | 530 |
| Tsp45I | GTSAC | 1 cut(s) | 290 |
| TspDTI | ATGAA | 3 cut(s) | 17, 256, 417 |
| TspRI | CASTG | 3 cut(s) | 58, 167, 494 |
| XapI | RAATTY | 1 cut(s) | 303 |
| Zsp2I | ATGCAT | 1 cut(s) | 440 |